Carg01189 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01189
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein STRICTOSIDINE SYNTHASE-LIKE 6-like
LocationCarg_Chr06: 762749 .. 763000 (+)
RNA-Seq ExpressionCarg01189
SyntenyCarg01189
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAACGAGGAGGCACGGGTGGCGGCCGAATTTGGAGAGGAACGGCGGCGCGGTGGCTGTGAATCTTGAAGGGAAACAAGTTGCTTGGTATTATGATTACGGATTGTCGATGATAACCACCGGATTGAAGATCAAAAACCATCTCTACTGTGGATCTTTCGTGTTTCCCGGCATTCTTCGCCTGAATTTGGACCGGTATCCTGCTAGAACCGCCGGTTGCCCGTGGTCCAACTCTGGCGACCTGTAA

mRNA sequence

ATGGCGATAACGAGGAGGCACGGGTGGCGGCCGAATTTGGAGAGGAACGGCGGCGCGGTGGCTGTGAATCTTGAAGGGAAACAAGTTGCTTGGTATTATGATTACGGATTGTCGATGATAACCACCGGATTGAAGATCAAAAACCATCTCTACTGTGGATCTTTCGTGTTTCCCGGCATTCTTCGCCTGAATTTGGACCGGTATCCTGCTAGAACCGCCGGTTGCCCGTGGTCCAACTCTGGCGACCTGTAA

Coding sequence (CDS)

ATGGCGATAACGAGGAGGCACGGGTGGCGGCCGAATTTGGAGAGGAACGGCGGCGCGGTGGCTGTGAATCTTGAAGGGAAACAAGTTGCTTGGTATTATGATTACGGATTGTCGATGATAACCACCGGATTGAAGATCAAAAACCATCTCTACTGTGGATCTTTCGTGTTTCCCGGCATTCTTCGCCTGAATTTGGACCGGTATCCTGCTAGAACCGCCGGTTGCCCGTGGTCCAACTCTGGCGACCTGTAA

Protein sequence

MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGILRLNLDRYPARTAGCPWSNSGDL
Homology
BLAST of Carg01189 vs. NCBI nr
Match: KAG6596265.1 (Protein GRIP, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 487 MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 546

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 547 LRLNLDRYPARTAGCPWSNSGDL 569

BLAST of Carg01189 vs. NCBI nr
Match: KAG7027815.1 (Protein STRICTOSIDINE SYNTHASE-LIKE 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
          MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 1  MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60

Query: 61 LRLNLDRYPARTAGCPWSNSGDL 84
          LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 61 LRLNLDRYPARTAGCPWSNSGDL 83

BLAST of Carg01189 vs. NCBI nr
Match: XP_022971316.1 (protein STRICTOSIDINE SYNTHASE-LIKE 6-like [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAITRRHGWRPNLE+NGGAVAVNLEGKQV WYYDYGLSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 301 MAITRRHGWRPNLEKNGGAVAVNLEGKQVGWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 360

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 361 LRLNLDRYPARTAGCPWSNSGDL 383

BLAST of Carg01189 vs. NCBI nr
Match: XP_023540078.1 (protein STRICTOSIDINE SYNTHASE-LIKE 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAITRRHGWRPNLE+NGGAVAVNLEGKQV WYYDYGLSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 301 MAITRRHGWRPNLEKNGGAVAVNLEGKQVGWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 360

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 361 LRLNLDRYPARTAGCPWSNSGDL 383

BLAST of Carg01189 vs. NCBI nr
Match: XP_022959122.1 (protein STRICTOSIDINE SYNTHASE-LIKE 6-like [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDY LSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 301 MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYELSMITTGLKIKNHLYCGSFVFPGI 360

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 361 LRLNLDRYPARTAGCPWSNSGDL 383

BLAST of Carg01189 vs. ExPASy Swiss-Prot
Match: Q9SD05 (Protein STRICTOSIDINE SYNTHASE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SSL6 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.1e-13
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           A+  ++G+ P    N G + V+L+G  +A+Y+D  LS ITTG+KI N+LYCGS     IL
Sbjct: 298 AMAAKYGYEPMFMENAGVLQVDLDGNPIAYYHDQALSHITTGVKIGNYLYCGSLWHSHIL 357

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 358 RLDLLKYPAQ 367

BLAST of Carg01189 vs. ExPASy Swiss-Prot
Match: Q9CAZ7 (Protein STRICTOSIDINE SYNTHASE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SSL5 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-11
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           AI  ++G      +N G + V+L+G  +A+Y+D  LS ITTG+KI N+LYCG+ +   I+
Sbjct: 298 AIAAKYGVELMFMKNAGVLQVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYII 357

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 358 RLDLLKYPAQ 367

BLAST of Carg01189 vs. ExPASy Swiss-Prot
Match: Q9SD07 (Protein STRICTOSIDINE SYNTHASE-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=SSL4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 15  RNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGILRLNLDRYPAR 72
           +N   + V+L+G  +A Y+D+  S IT+G+KI NHLY GS +   I RL+L +YPA+
Sbjct: 311 KNAAVLQVDLDGNPIAMYHDHPFSHITSGVKIGNHLYFGSLLHSYITRLDLLKYPAQ 367

BLAST of Carg01189 vs. ExPASy Swiss-Prot
Match: Q9SD04 (Protein STRICTOSIDINE SYNTHASE-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=SSL7 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           A+  ++G       N G + V+L+G  +A+Y+D  LS I T  KI  +LYCGS     IL
Sbjct: 298 AMVAKYGVDLMFMENAGVLQVDLDGNPIAYYHDPKLSHIATCDKIGKYLYCGSLSQSHIL 357

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 358 RLDLLKYPAQ 367

BLAST of Carg01189 vs. ExPASy TrEMBL
Match: A0A6J1I301 (protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Cucurbita maxima OX=3661 GN=LOC111470074 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.9e-43
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAITRRHGWRPNLE+NGGAVAVNLEGKQV WYYDYGLSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 301 MAITRRHGWRPNLEKNGGAVAVNLEGKQVGWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 360

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 361 LRLNLDRYPARTAGCPWSNSGDL 383

BLAST of Carg01189 vs. ExPASy TrEMBL
Match: A0A6J1H3P3 (protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Cucurbita moschata OX=3662 GN=LOC111460186 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.0e-43
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDY LSMITTGLKIKNHLYCGSFVFPGI
Sbjct: 301 MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYELSMITTGLKIKNHLYCGSFVFPGI 360

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRLNLDRYPARTAGCPWSNSGDL
Sbjct: 361 LRLNLDRYPARTAGCPWSNSGDL 383

BLAST of Carg01189 vs. ExPASy TrEMBL
Match: A0A0A0L1J9 (Str_synth domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002390 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAI  ++G RPNLE+NGG VAVNLEG+QVAWYYDY  +++T G+KI NHLY GS   PGI
Sbjct: 306 MAIMEKYGQRPNLEKNGGVVAVNLEGEQVAWYYDYKWTLVTAGIKIGNHLYSGSLALPGI 365

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRL+LD++PA  AGCPWS S DL
Sbjct: 366 LRLDLDKFPATAAGCPWSKSHDL 388

BLAST of Carg01189 vs. ExPASy TrEMBL
Match: A0A6J1CW15 (protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Momordica charantia OX=3673 GN=LOC111014916 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.9e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           +A+  + G RP +E+NGG VAVNLEGK VAWYYDY LS++TTG+KI NHLYCGS  FPGI
Sbjct: 312 LAMMEKKGRRPKMEKNGGVVAVNLEGKAVAWYYDYKLSLVTTGMKIGNHLYCGSLAFPGI 371

Query: 61  LRLNLDRYPARTAGCPWSNS 81
           LRL+LD+YPAR+A CP SNS
Sbjct: 372 LRLDLDQYPARSAACPRSNS 391

BLAST of Carg01189 vs. ExPASy TrEMBL
Match: A0A5D3CHK9 (Protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00350 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 1   MAITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGI 60
           MAI  ++G RPNLE+NGG VAVNL+G+QVAWYYDY  S++T G+KI NHLY GS   PGI
Sbjct: 306 MAIMEKYGRRPNLEKNGGVVAVNLQGEQVAWYYDYKWSLVTAGIKIGNHLYSGSLALPGI 365

Query: 61  LRLNLDRYPARTAGCPWSNSGDL 84
           LRL+LD++PA   GCPWS S DL
Sbjct: 366 LRLDLDKFPATATGCPWSKSHDL 388

BLAST of Carg01189 vs. TAIR 10
Match: AT3G51440.1 (Calcium-dependent phosphotriesterase superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-14
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           A+  ++G+ P    N G + V+L+G  +A+Y+D  LS ITTG+KI N+LYCGS     IL
Sbjct: 298 AMAAKYGYEPMFMENAGVLQVDLDGNPIAYYHDQALSHITTGVKIGNYLYCGSLWHSHIL 357

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 358 RLDLLKYPAQ 367

BLAST of Carg01189 vs. TAIR 10
Match: AT3G51430.1 (Calcium-dependent phosphotriesterase superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           AI  ++G      +N G + V+L+G  +A+Y+D  LS ITTG+KI N+LYCG+ +   I+
Sbjct: 298 AIAAKYGVELMFMKNAGVLQVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYII 357

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 358 RLDLLKYPAQ 367

BLAST of Carg01189 vs. TAIR 10
Match: AT3G51430.2 (Calcium-dependent phosphotriesterase superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           AI  ++G      +N G + V+L+G  +A+Y+D  LS ITTG+KI N+LYCG+ +   I+
Sbjct: 296 AIAAKYGVELMFMKNAGVLQVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYII 355

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 356 RLDLLKYPAQ 365

BLAST of Carg01189 vs. TAIR 10
Match: AT3G51420.1 (strictosidine synthase-like 4 )

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-09
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 15  RNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGILRLNLDRYPAR 72
           +N   + V+L+G  +A Y+D+  S IT+G+KI NHLY GS +   I RL+L +YPA+
Sbjct: 311 KNAAVLQVDLDGNPIAMYHDHPFSHITSGVKIGNHLYFGSLLHSYITRLDLLKYPAQ 367

BLAST of Carg01189 vs. TAIR 10
Match: AT3G51450.1 (Calcium-dependent phosphotriesterase superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 2   AITRRHGWRPNLERNGGAVAVNLEGKQVAWYYDYGLSMITTGLKIKNHLYCGSFVFPGIL 61
           A+  ++G       N G + V+L+G  +A+Y+D  LS I T  KI  +LYCGS     IL
Sbjct: 298 AMVAKYGVDLMFMENAGVLQVDLDGNPIAYYHDPKLSHIATCDKIGKYLYCGSLSQSHIL 357

Query: 62  RLNLDRYPAR 72
           RL+L +YPA+
Sbjct: 358 RLDLLKYPAQ 367

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6596265.12.2e-43100.00Protein GRIP, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7027815.12.2e-43100.00Protein STRICTOSIDINE SYNTHASE-LIKE 6, partial [Cucurbita argyrosperma subsp. ar... [more]
XP_022971316.11.4e-4297.59protein STRICTOSIDINE SYNTHASE-LIKE 6-like [Cucurbita maxima][more]
XP_023540078.11.4e-4297.59protein STRICTOSIDINE SYNTHASE-LIKE 6-like [Cucurbita pepo subsp. pepo][more]
XP_022959122.11.9e-4298.80protein STRICTOSIDINE SYNTHASE-LIKE 6-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q9SD057.1e-1347.14Protein STRICTOSIDINE SYNTHASE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SSL6 PE... [more]
Q9CAZ72.3e-1144.29Protein STRICTOSIDINE SYNTHASE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SSL5 PE... [more]
Q9SD074.0e-0845.61Protein STRICTOSIDINE SYNTHASE-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=SSL4 PE... [more]
Q9SD042.0e-0741.43Protein STRICTOSIDINE SYNTHASE-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=SSL7 PE... [more]
Match NameE-valueIdentityDescription
A0A6J1I3016.9e-4397.59protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1H3P39.0e-4398.80protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A0A0L1J93.1e-2767.47Str_synth domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002390 P... [more]
A0A6J1CW156.9e-2770.00protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A5D3CHK91.2e-2666.27Protein STRICTOSIDINE SYNTHASE-LIKE 6-like OS=Cucumis melo var. makuwa OX=119469... [more]
Match NameE-valueIdentityDescription
AT3G51440.15.1e-1447.14Calcium-dependent phosphotriesterase superfamily protein [more]
AT3G51430.11.6e-1244.29Calcium-dependent phosphotriesterase superfamily protein [more]
AT3G51430.21.6e-1244.29Calcium-dependent phosphotriesterase superfamily protein [more]
AT3G51420.12.9e-0945.61strictosidine synthase-like 4 [more]
AT3G51450.11.4e-0841.43Calcium-dependent phosphotriesterase superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01189-RACarg01189-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0016844 strictosidine synthase activity