Carg01060 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01060
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 1410554 .. 1411135 (-)
RNA-Seq ExpressionCarg01060
SyntenyCarg01060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATGAGAGTTACCACTTTCAAATTGGCCAATGAACTGGGAATTGGTCCTTCGAAAGAATTGCCAGACATGATCAAGTACTCAAGATTCAAGAAGTTTCCTATGGTGTCTGGAATGGCTCCGGAGAGTTGATTTGTGGCGACATCGAATAATTGAACCATCAATAGCTTGTCAATTTCAGAAGGCAAAGAACCTGTCAAGTTGTTGACTGAAACGTTGAATTCTAAAAGATTTGGGAAGCTAAAGATCTCCTTTGGTAAGTTCCCGCTCAACCCATTTTGTGATAGATCAAATACGTGTAGACGCTCACAGTTTGTTAAACTGAGAGGAATTTTTCCACTTAATTTGTTATCATTGACTAAAAACAGAGAGAGCTCACTTAGATTACCAAACGTTTCAGGGATGGAGCCTGACAGAATATTTGATTCTAATGATAGCACCTGCAAGTTCTTGAGGTTTGATAATGAAGAAGGAATGTTACCTGTGAAGGAATTTGAAGGTAAAGATACAGAAATGAGGCCACCCAAGTTTCCTATTTCACTAGGGATGCTTCCACTAAATTGGTTTTCTGCCATTAGA

mRNA sequence

ATGTCTATGAGAGTTACCACTTTCAAATTGGCCAATGAACTGGGAATTGGTCCTTCGAAAGAATTGCCAGACATGATCAAGTACTCAAGATTCAAGAAGTTTCCTATGGTGTCTGGAATGGCTCCGGAGAAAGGCAAAGAACCTGTCAAGTTGTTGACTGAAACGTTGAATTCTAAAAGATTTGGGAAGCTAAAGATCTCCTTTGGGATGGAGCCTGACAGAATATTTGATTCTAATGATAGCACCTGCAAGTTCTTGAGGTTTGATAATGAAGAAGGAATGTTACCTGTGAAGGAATTTGAAGGTAAAGATACAGAAATGAGGCCACCCAAGTTTCCTATTTCACTAGGGATGCTTCCACTAAATTGGTTTTCTGCCATTAGA

Coding sequence (CDS)

ATGTCTATGAGAGTTACCACTTTCAAATTGGCCAATGAACTGGGAATTGGTCCTTCGAAAGAATTGCCAGACATGATCAAGTACTCAAGATTCAAGAAGTTTCCTATGGTGTCTGGAATGGCTCCGGAGAAAGGCAAAGAACCTGTCAAGTTGTTGACTGAAACGTTGAATTCTAAAAGATTTGGGAAGCTAAAGATCTCCTTTGGGATGGAGCCTGACAGAATATTTGATTCTAATGATAGCACCTGCAAGTTCTTGAGGTTTGATAATGAAGAAGGAATGTTACCTGTGAAGGAATTTGAAGGTAAAGATACAGAAATGAGGCCACCCAAGTTTCCTATTTCACTAGGGATGCTTCCACTAAATTGGTTTTCTGCCATTAGA

Protein sequence

MSMRVTTFKLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGKLKISFGMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLPLNWFSAIR
Homology
BLAST of Carg01060 vs. NCBI nr
Match: KAG7027941.1 (hypothetical protein SDJN02_09120, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0

Query: 1   MSMRVTTFKLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKR 60
           MSMRVTTFKLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKR
Sbjct: 1   MSMRVTTFKLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKR 60

Query: 61  FGKLKISFGMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLP 120
           FGKLKISFGMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLP
Sbjct: 61  FGKLKISFGMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLP 120

Query: 121 LNWFSAIR 129
           LNWFSAIR
Sbjct: 121 LNWFSAIR 128

BLAST of Carg01060 vs. NCBI nr
Match: GAY68971.1 (hypothetical protein CUMW_268360 [Citrus unshiu])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 38/111 (34.23%), Postives = 51/111 (45.95%), Query Frame = 0

Query: 14  LGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGKLKISFGMEPD 73
           L I PS  L +  + SR++ F    GMAPE      +LL +        K     G+EP 
Sbjct: 54  LRISPSSLLKERSRSSRYESFSKDIGMAPE------RLLLDKFKVLLLDKSPNDSGIEPC 113

Query: 74  RIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLPLNWF 125
            +       C+FLR     G++P K F  K T  +P KFPIS G  P+  F
Sbjct: 114 NLLYPQKRNCRFLRPPIAAGIIPEKLFIEKSTPTKPFKFPISNGSGPVKKF 158

BLAST of Carg01060 vs. NCBI nr
Match: KAF4387080.1 (hypothetical protein G4B88_024652, partial [Cannabis sativa])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 40/126 (31.75%), Postives = 59/126 (46.83%), Query Frame = 0

Query: 4   RVTTFKLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGK 63
           RV   +   E+GIGP K   +  +  RF KFP+       KG EPVKL  +  N+  F  
Sbjct: 325 RVRLLRFHREVGIGPVKWFLERTRLLRFFKFPI------SKGIEPVKLFAKADNTSNFSS 384

Query: 64  LKISFGMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDT-EMRPPKFPISLGMLPLN 123
           L +  G  PD      +   + LRF  E G+ PV+     ++ E+   K P +L  + L 
Sbjct: 385 LDMLIGSAPDSWLVLTEKKMRLLRFHIEVGIGPVRLCLSLESFEILDDKCPTNLLSVRLK 444

Query: 124 WFSAIR 129
            +S +R
Sbjct: 445 DWSLMR 444

BLAST of Carg01060 vs. ExPASy TrEMBL
Match: A0A6N2LIH3 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-06
Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = 0

Query: 13  ELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGKLKISFGMEP 72
           E GIGP   L    K  RF KFPM SG+       PVK L +  +  R     ISFGM+P
Sbjct: 38  ERGIGPESLLLSSKKTDRFLKFPMESGI------PPVKTLLDKSSLLRDSSNPISFGMKP 97

Query: 73  DRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLP 121
           + +        +FL+F  E G+ PV+ F  +   +    FPI  G+ P
Sbjct: 98  ESLLPRRKRMDRFLKFPMEAGIKPVRLFCCRVISLSMVMFPIEEGIGP 139

BLAST of Carg01060 vs. ExPASy TrEMBL
Match: A0A6N2LL64 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 46/133 (34.59%), Postives = 57/133 (42.86%), Query Frame = 0

Query: 13  ELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGKLKISFGMEP 72
           E GIGP   L    K  RF KFPM SG+       PVK L +  +  R     ISFGM+P
Sbjct: 70  ERGIGPESLLLSSKKTDRFLKFPMESGI------PPVKTLLDKSSLLRDSSNPISFGMKP 129

Query: 73  DRIFDSN---DSTC--------------------KFLRFDNEEGMLPVKEFEGKDTEMRP 123
           + +       DS                      KFL+F  +EG+ PVK    K + +R 
Sbjct: 130 ESLLPRRKRMDSYIIEHGHVPNRRRDWTRELVLKKFLKFPIDEGIPPVKTLIDKSSLLRD 189

BLAST of Carg01060 vs. ExPASy TrEMBL
Match: A0A2H5QWH1 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_268360 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 38/111 (34.23%), Postives = 51/111 (45.95%), Query Frame = 0

Query: 14  LGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGKLKISFGMEPD 73
           L I PS  L +  + SR++ F    GMAPE      +LL +        K     G+EP 
Sbjct: 54  LRISPSSLLKERSRSSRYESFSKDIGMAPE------RLLLDKFKVLLLDKSPNDSGIEPC 113

Query: 74  RIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDTEMRPPKFPISLGMLPLNWF 125
            +       C+FLR     G++P K F  K T  +P KFPIS G  P+  F
Sbjct: 114 NLLYPQKRNCRFLRPPIAAGIIPEKLFIEKSTPTKPFKFPISNGSGPVKKF 158

BLAST of Carg01060 vs. ExPASy TrEMBL
Match: A0A7J6GXM0 (Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_024652 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-05
Identity = 40/126 (31.75%), Postives = 59/126 (46.83%), Query Frame = 0

Query: 4   RVTTFKLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGK 63
           RV   +   E+GIGP K   +  +  RF KFP+       KG EPVKL  +  N+  F  
Sbjct: 325 RVRLLRFHREVGIGPVKWFLERTRLLRFFKFPI------SKGIEPVKLFAKADNTSNFSS 384

Query: 64  LKISFGMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGKDT-EMRPPKFPISLGMLPLN 123
           L +  G  PD      +   + LRF  E G+ PV+     ++ E+   K P +L  + L 
Sbjct: 385 LDMLIGSAPDSWLVLTEKKMRLLRFHIEVGIGPVRLCLSLESFEILDDKCPTNLLSVRLK 444

Query: 124 WFSAIR 129
            +S +R
Sbjct: 445 DWSLMR 444

BLAST of Carg01060 vs. ExPASy TrEMBL
Match: A0A2P2MWM5 (Putative LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0

Query: 9   KLANELGIGPSKELPDMIKYSRFKKFPMVSGMAPEKGKEPVKLLTETLNSKRFGKLKISF 68
           +LAN  GIGP+KELP   K   F +FPM +G+       PV  L+E      F +L    
Sbjct: 63  RLANSDGIGPTKELPVNRKSLSFDQFPMKAGIV------PVSSLSEPQRVSMFCQLANVE 122

Query: 69  GMEPDRIFDSNDSTCKFLRFDNEEGMLPVKEFEGK 104
           G+ P     SN   CKF++F + EG  P K F  K
Sbjct: 123 GISPLNPQLSNRIRCKFVQFPSSEGRDPEKLFPPK 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7027941.12.0e-67100.00hypothetical protein SDJN02_09120, partial [Cucurbita argyrosperma subsp. argyro... [more]
GAY68971.11.1e-0434.23hypothetical protein CUMW_268360 [Citrus unshiu][more]
KAF4387080.11.8e-0431.75hypothetical protein G4B88_024652, partial [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2LIH37.9e-0636.11Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=... [more]
A0A6N2LL642.3e-0534.59Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=... [more]
A0A2H5QWH15.1e-0534.23Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_268360 PE=4 SV=1[more]
A0A7J6GXM08.8e-0531.75Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_024652 PE... [more]
A0A2P2MWM51.5e-0438.95Putative LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Rhizopho... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01060-RACarg01060-RAmRNA