Carg00450 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00450
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Coatomer subunit zeta
Location	Carg_Chr04: 7374650 .. 7378267 (-)
RNA-Seq Expression	Carg00450
Synteny	Carg00450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGATTATGCTATATCCGTTGCCAAACAAGCCCTAATTGGTGCCTTAGAATAGAACTTAGAAGAAGAGGAAAAGGAAGAACAAGGAAAAAGAAAAAGTGCGATAGAGAAAATCTGGGATTGTAAGATTTATTTCGAGAATTCGAACTAGAATATAACTCGGCTCTGAATCAGATTTCTTCCTTGAGAAACTCCGATCGAATCCGAAAGATCAGGCATGTTGCTTGCCGTGCTGATTGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTACCATTTTTTTTTCTTACGCTTCTTGGCTTAATCGATTGAGCATTTTTTTTTTCGTTGCATTTTCATGTTTCTGATGTGCGTTAGCGAGAATGTGTGATTTGAATGGCTTCTTTGTGTAATCAATCGCTTTGTTGTGGTTTTCTGTGCCGATTGCTTTGATGATTGTGTGAAATGTGCGATTAGCTTCAGATGTATTCCTATTAGAATTGAAATAAGCTTGAGAATTTAGTGTTTAGGAGGGAAATGATGCTCTGTCACTGCCATCTACTCTAACTTGGACTGACTTTGTGTTCTATTGGTTAGGAATTCTTCGCCATCTAGTTTCATGCGATTGAACTGTTGATCATGATTTTTATTTGTTTTTTTTTAGGTTTCACGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCTGGGAGCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTATGTTGCTTCGCACAAGTGAGTGGAATCTTCCGATCAGTTCTTTAGAAGCAATTTTGAACAATTCTCAGTGATGCATTATAATTGAAAACTGATCTTTGCAAAAAATGACGAGTTTTCATACTCTGCATCTGAGGTACCGTTTGTTGATCTTCCCACCCCTAGGGTGAGAAGGAGAAACTCAAAGGATAACGATTGAGCCTCATCCTCCTCTTCTATTGAGCTTCATCCCTGAGAATTTTCAAATGCGCGGGGGAAATCGATGAAGTTTATTTGCGTGATTATTGTTATAATGTTTTAGTATCGCAATTGTCGCCAAGTCCATTAAATCCAATAGGATATAATAGACAGCTAGAACTTACAAGCCTCCATTTCCATTTTCCTCCATTGCTGTTCTTTGATCGGTTTCGTTTCTCATCTCCAACAATAATAGACAGCTAGAAACTGCAAGTTCAAGCTTGTTTATGAATAATGAAGTCTTTGGTATTCCAAAGACAACGCCAATATGAGTCAAATGTTCTTAGGATCTGCCCCTTGGCCCCCTTGATTCTTTGAAAGACTTGTTGAACTTGATCTAGTGCCTTGATCTTTCATTATTATTCTTGCATAACCTAGACCAATTGGGGCATAAGCGAGCAACTTCTTTTCTTTTTCTGTAGACATAAATGGCATCCACTCTGCCAAGCAATGACTGCACGAATAATAGATTCTTCATAGGTACCTTCTATTTCCAAAGCCTCTTGGTCGTCTCCTTAGAAATTGCCTAACTTACCAAGTAAGATCTTGAAGATGGATTAAGACCTTTGAAAATGGATTGAAGAGAAAGCTATTCTACTTCTCTATCACTTTAATGACTGTTAAAAATAAGGTTCCATCCCTGACATGGATATTTTGAATGTATAAAATGATCATCATTTTGCTTCCATCTAATTATTGTTATGGACTGAGTAATTTATCAAATTGTCTCTTTATCCTTCCTCCAACTCAAGAGGGAGGTATTGAAAACATAGTATTTGCTAGCTACAACTGCAAACCTCTAGGGGCTTCTTGAACTACTGTTGAAATGTGTGGTAGTTGCCATATAGTACAAAAGTTACAAAGGCTGTGTTCTTAGCTCGAATGGTCACCAATGTTTGAAATAAACTGTTTTACTGCTAAATAAAATGCTTCCCTCTCCAAATCTGGATGTTTCCTTTGATAATTCTTCTTTTTCTCTCTTTCTTTATTTTTTTTTCTCTTTCTTTCCTTTTTTCCCAATAGACTGCCTTGCTCATGAGGGAATCTTAAACAACAAGGTTAGCCAGTGGCTTGAATAAGAGTCAACCTTCCCCATCTAAAATAAAAGCATTTCTCATACATTACGTCAATCAGTCCCTTTCAATTTTGTGATACTTCTCATTGGATTGTCTTCTGTAGCTGGTTTTACCATTAAATTTGTCTAACATTCTGTAACAGGTCTGTATACGTTGTTTACACAGTCCTCGGTGATGTTGCAGTTTATGTTGTTGGGAAGGATGAATATGATGAATTAGCTTGTAAGTAAATGCCAATTCTTCCCTTTTCTTTGGACTCAATTCCTTCTCTCTCCCTCATCCTCCTGATAAAAAATTGCAGCGTTTCCTTCTTTTTTGTTTTGTTTTTATCCCGATCTTTTCTGTGTCATTTATCCTCTACGTTAATGTCCTTTCCTCTTCTTCAAGTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGATTGTTTCTTGACAAATATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGTATGTCCTTTCTTTTCTCCCTTACTCAGAAATCACCTTGTAGGTTCCGTGACTGAGCTGCCAAAAATCATGGGGCTCAAGCTCATTATCCAGCCAGATTTAGTGATAGTCATGTTAAAATCTTAAGACTTTAATTTAAGAAAACTCTTTGCAAATTGCCTTGGAGAGAACAGAGTGTCTGAGAAAACAAAATGGTGTTGTTGTTTTGTTGCGGGCATAGAACAAATTATCGATTTTTCCTTTTATTTTTGATCTGTAAGTTTGATTTTTGTCGAGCAATTTTCTGTCTCGAGGAGGAAAGATTTTTACATCCGTTTCTTATTTTCAAAAAAAAAAAAAAAAAAAAGAAGCTTTGTGAAATGTCTTTCTCTGAATAGAAATTTGAGGGTCTCTCATAATTGCTAAAGAATACCCAATGTAAGCATATTGACTACACTTGTTCTACTATAGATCATGTCTGCAGTGGTGAAACGTATCTCATGGCTAAAAAATTTATTGAAGATTCAGGCTGAGATATCTGTATTTACAATAATTATATTTCATCTCCGATAAAATTCCTTGACAATAATAGTTGATACTTTGTTTGATCTACAATGTCATTGAATTAGATGGGTTAAATGCAGCGGTTAGCTTTTCACATCTTCAATGTTACTTATCTATTTCATGTCTGTGAAGGGTATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGTAAGGTTAAAGCCTCCAAATGAGTTTTGATTTAATGAAAGGGTTGCCATCCTCTCAGTCGTCCACTTCGACGTTACTGCTTCCACGTGGTTATCTTCCTGCTTTTCAACTCTTTTACCCGCAAGATCGTTTCAGCTTTCAGCCCTGTTTTATCATGGTGATCGTCGGTATGTTTACTATACTTCCTATTCTATTTTGTTCGGTTTGTAAGTTAGAACACACGATTCTAAAAGAATTCAAGGGATTGTTTGGATTAAGATTTTCATAGCGGGTAGGAAGCTTGCGAATACCGACTACATTGGGATTATGAAGTAAATTTGTAGTTGAGATAAAGATT

mRNA sequence

ATCAGATTATGCTATATCCGTTGCCAAACAAGCCCTAATTGGTGCCTTAGAATAGAACTTAGAAGAAGAGGAAAAGGAAGAACAAGGAAAAAGAAAAAGTGCGATAGAGAAAATCTGGGATTGTAAGATTTATTTCGAGAATTCGAACTAGAATATAACTCGGCTCTGAATCAGATTTCTTCCTTGAGAAACTCCGATCGAATCCGAAAGATCAGGCATGTTGCTTGCCGTGCTGATTGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCACGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCTGGGAGCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTATGTTGCTTCGCACAAGTCTGTATACGTTGTTTACACAGTCCTCGGTGATGTTGCAGTTTATGTTGTTGGGAAGGATGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGATTGTTTCTTGACAAATATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGGTATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGTAAGGTTAAAGCCTCCAAATGAGTTTTGATTTAATGAAAGGGTTGCCATCCTCTCAGTCGTCCACTTCGACGTTACTGCTTCCACGTGGTTATCTTCCTGCTTTTCAACTCTTTTACCCGCAAGATCGTTTCAGCTTTCAGCCCTGTTTTATCATGGTGATCGTCGGTATGTTTACTATACTTCCTATTCTATTTTGTTCGGTTTGTAAGTTAGAACACACGATTCTAAAAGAATTCAAGGGATTGTTTGGATTAAGATTTTCATAGCGGGTAGGAAGCTTGCGAATACCGACTACATTGGGATTATGAAGTAAATTTGTAGTTGAGATAAAGATT

Coding sequence (CDS)

ATGTTGCTTGCCGTGCTGATTGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCACGGAGTTCCGGCAGAGGAGCGATTGCATTGGCGATCCTTTCTAGTGAAGCTGGGAGCTGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTATGTTGCTTCGCACAAGTCTGTATACGTTGTTTACACAGTCCTCGGTGATGTTGCAGTTTATGTTGTTGGGAAGGATGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGATTGTTTCTTGACAAATATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGGTATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGTAAGGTTAAAGCCTCCAAATGAGTTTTGA

Protein sequence

MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLVRLKPPNEF

Homology

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BLAST of Carg00450 vs. NCBI nr
Match: XP_022941369.1 (uncharacterized protein LOC111446682 [Cucurbita moschata] >XP_022982153.1 uncharacterized protein LOC111481073 [Cucurbita maxima] >XP_023524417.1 uncharacterized protein LOC111788321 [Cucurbita pepo subsp. pepo] >KAG7031791.1 hypothetical protein SDJN02_05832 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVWMGILENTEKDRIKRLVRLKPPNEF
Sbjct: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 147

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BLAST of Carg00450 vs. NCBI nr
Match: XP_008466411.1 (PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo] >TYK31432.1 SNARE-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

[Close]

BLAST of Carg00450 vs. NCBI nr
Match: KAA0038809.1 (SNARE-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 142/147 (96.60%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGD+AVYVVGKDEYDELALAEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDIAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

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BLAST of Carg00450 vs. NCBI nr
Match: XP_038896955.1 (TSET complex member tstD [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 142/147 (96.60%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGK+PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKSPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

[Close]

BLAST of Carg00450 vs. NCBI nr
Match: XP_022134177.1 (uncharacterized protein LOC111006502 [Momordica charantia])

HSP 1 Score: 287.3 bits (734), Expect = 7.2e-74
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPP EF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPTEF 147

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BLAST of Carg00450 vs. ExPASy Swiss-Prot
Match: C0HLF1 (TSET complex member tstD OS=Dictyostelium discoideum OX=44689 GN=tstD PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 46/144 (31.94%), Postives = 80/144 (55.56%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY 60
           M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V       
Sbjct: 1   MINSLLITNNNGNIVFSKYYSNINDEKQSEYEKLLYQFTKDEWVNSKNEKHLVTEFSGYI 60

Query: 61  VVYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDAC-GKAPTERLFLDKYGKICLCL 120
            V+T +GD+ +++ G +E DELAL++V F I   +KD C  K  TE+ F+++  K  L L
Sbjct: 61  TVFTNVGDLMLFLCGSEEMDELALSDVFFPIIESLKDICKKKGVTEQNFIEQIPKFILYL 120

Query: 121 DEIVWMGILENTEKDRIKRLVRLK 143
           DEI+  G L+  + + I+    LK
Sbjct: 121 DEIIQRGHLDQVQLESIQNYSSLK 144

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BLAST of Carg00450 vs. ExPASy Swiss-Prot
Match: Q5NA06 (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0838800 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.7e-05
Identity = 35/131 (26.72%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 5   VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVVYTV 64
           +L+ +S G  +  +++          ++F   + A   K +   E  +    S +VVY  
Sbjct: 10  ILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKF 69

Query: 65  LGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWM 124
           + D+  +V G DE +EL LA V+   +  I          R  L+    I LCLDE+V  
Sbjct: 70  IQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDEVVDG 129

Query: 125 GILENTEKDRI 136
           GI+  T+   I
Sbjct: 130 GIVLETDAKAI 140

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BLAST of Carg00450 vs. ExPASy Swiss-Prot
Match: Q54CA7 (Probable coatomer subunit zeta-B OS=Dictyostelium discoideum OX=44689 GN=copZb PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 4   AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYVV 63
           A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   V+
Sbjct: 10  AIIVLDNNGKRLCSCFYDPPGTPITPLTEKDKFEKLIFEKCK-TSNCELEIIDNK--VVI 69

Query: 64  YTVLGDVAVYVVGKD-EYDELALAEVIFVITSLIKDACGKAP----TERLFLDKYGKICL 123
            +   DV ++VVG     +ELAL +V+  + SL K AC        T++ FL+ Y  I L
Sbjct: 70  GSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKTFLENYALIRL 129

Query: 124 CLDEIVWMGILENTEKDRI 136
            +DEIV  GI+   +++ I
Sbjct: 130 YIDEIVSDGIIFEVDEETI 145

[Close]

BLAST of Carg00450 vs. ExPASy TrEMBL
Match: A0A6J1J445 (Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111481073 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVWMGILENTEKDRIKRLVRLKPPNEF
Sbjct: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 147

[Close]

BLAST of Carg00450 vs. ExPASy TrEMBL
Match: A0A6J1FN50 (Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111446682 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVWMGILENTEKDRIKRLVRLKPPNEF
Sbjct: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 147

[Close]

BLAST of Carg00450 vs. ExPASy TrEMBL
Match: A0A5D3E691 (Coatomer subunit zeta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007430 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

[Close]

BLAST of Carg00450 vs. ExPASy TrEMBL
Match: A0A1S3CRC6 (Coatomer subunit zeta OS=Cucumis melo OX=3656 GN=LOC103503824 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGDVAVYVVGKDEYDELALAEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

[Close]

BLAST of Carg00450 vs. ExPASy TrEMBL
Match: A0A5A7TBS4 (Coatomer subunit zeta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003660 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.1e-75
Identity = 142/147 (96.60%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVY+
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYTVLGD+AVYVVGKDEYDELALAEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDIAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNEF 148
           IVW GILENTEKDRIKRL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

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BLAST of Carg00450 vs. TAIR 10
Match: AT1G15370.1 (SNARE-like superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 3.7e-68
Identity = 117/146 (80.14%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYV 60
           M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVY+
Sbjct: 1   MILAVLFANSVGNVLIERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVAVYVVGKDEYDELALAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDE 120
           VYT+LGDV++++VGKDEYDELALAE I++IT+ +KD CGK PTER+FLDKYG+ICLCLDE
Sbjct: 61  VYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDE 120

Query: 121 IVWMGILENTEKDRIKRLVRLKPPNE 147
           IVW G+LENT+KDRIKRL+RLKPP+E
Sbjct: 121 IVWNGLLENTDKDRIKRLIRLKPPSE 146

The following BLAST results are available for this feature:

BLAST of Carg00450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941369.1	3.5e-76	100.00	uncharacterized protein LOC111446682 [Cucurbita moschata] >XP_022982153.1 unchar...	[more]
XP_008466411.1	1.1e-74	97.28	PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo] >TYK31432.1 SNARE...	[more]
KAA0038809.1	1.5e-74	96.60	SNARE-like superfamily protein [Cucumis melo var. makuwa]	[more]
XP_038896955.1	2.5e-74	96.60	TSET complex member tstD [Benincasa hispida]	[more]
XP_022134177.1	7.2e-74	96.60	uncharacterized protein LOC111006502 [Momordica charantia]	[more]

BLAST of Carg00450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0HLF1	1.8e-14	31.94	TSET complex member tstD OS=Dictyostelium discoideum OX=44689 GN=tstD PE=1 SV=1	[more]
Q5NA06	5.7e-05	26.72	Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0838800...	[more]
Q54CA7	3.7e-04	30.22	Probable coatomer subunit zeta-B OS=Dictyostelium discoideum OX=44689 GN=copZb P...	[more]

BLAST of Carg00450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J445	1.7e-76	100.00	Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111481073 PE=3 SV=1	[more]
A0A6J1FN50	1.7e-76	100.00	Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111446682 PE=3 SV=1	[more]
A0A5D3E691	5.4e-75	97.28	Coatomer subunit zeta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A1S3CRC6	5.4e-75	97.28	Coatomer subunit zeta OS=Cucumis melo OX=3656 GN=LOC103503824 PE=3 SV=1	[more]
A0A5A7TBS4	7.1e-75	96.60	Coatomer subunit zeta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92...	[more]

BLAST of Carg00450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15370.1	3.7e-68	80.14	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..138 e-value: 1.1E-5 score: 25.3
None	No IPR available	GENE3D	3.30.450.60		coord: 1..142 e-value: 2.1E-17 score: 65.4
None	No IPR available	PANTHER	PTHR11043:SF19	SUBFAMILY NOT NAMED	coord: 3..147
IPR039652	Coatomer subunit zeta	PANTHER	PTHR11043	ZETA-COAT PROTEIN	coord: 3..147
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00450-RA	Carg00450-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane