Carg00347 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00347
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 6722071 .. 6724268 (-)
RNA-Seq ExpressionCarg00347
SyntenyCarg00347
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGCCAAATTCGAGGGTCAATTGCCATGTGTTCTGCTTATGATCGAAACACTGGCCGAGGCAAAGGGACCATTGTCAAGGTGACCTTTCAAATCTTATCTGATTACATGATTATCTTTTGTTTAAGCTTAGGGATTAAGGAACTCTAGAAGGCTCGTACATTTAGACTAGAACAATTGCATTTATTTAGATTTGACATTTTGATTTTTGGAGTCTGGATTCTTTTTAACCAGGATGTGAACACGAATTTTCTATAGAATACCAAGTATTTTTAAAAACTATACTAAATGAAAATTAAACTCTAAATTTAGGAATAGAAGTGTAACGTTTTGAAAATTAAATGAAAATTATACTTGTGTGTCTATTGTTTCAAAAATAAATAAATGAATACATACTTGTTTGTTCTCTTCTATAGTTGAAACATGTAGTAACGTAAAATACCCAATTGATATGGTTGAAATAGTTGAAGTAAGCTCAAATTAGCCATGAAATAGTTGACATCTGTTGCAGTATGGTCAAATGAAACTATAGTTTCTCTCTCTTTACTTTCAAATGGGGTCAGAACAAGGTTAGATTTTGGCTCCTCTAAACACTTGTCTGTTTGTTTAAGTGTCGTCTACATGCGTTCAACCTTGGTTGGTTCAACTTGATTTGACAAGGCCAAAGCGGGGTTTTGAGTCGTCAGTGTAGTAATCTTTATTTCGAGCCCAATTTTGCTCACGTGTTCAATTTTGGCATTGTCTTCCTCTCCTCTAATTTCTTCACTGCTTATACAACAACTTACCCTGGACCAAATTATTCCAAATAGATAGAGTCATCTCGTTGACACTGGTATATTGCATGCTACAAACACTCTGTTGCTTATGTTATAAAAGTATAACAATCTTCGGGTTAGAATGTGGTCTAAGTACATATAATAATCTTCAAGTTAGAATGCGGTCTATGTTGAAGATTATTAGGAGTGAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGCGAGGAAAATACTATCTCCATTGGTACGAGGTCTTTTTAGGAAACCCAAAATAAAATCATGAGAGTTTATGCTGAAAGTGGAAAATATTATACCATTGTGGAGAGTTGTGATTTCTAACTGTCTAAAGAGTTGACCTACTTAAGGAAAGAAAAGCGCACATATTCTATCTATTCATCTGATTTTAATTTTTATGATCCAAAATCACTCGAGAATAACGAATAAGTCACAATAAAACAAATGATGTATTAATTTAATTTGATTTTTAAACCATCCATTCCAATGCAACTTCTACTCTTTTTTTTCTTTTTTTAGATTATTGATGAAAATTAATATGCCCATGGAATCATTTAAGTTGCCGTAATTAAACACTTTCATATCATGTGGATTCGAAATTAATAACCCAAATCTCAAACGTTATATTATTTCGTAAACCCTATAATTAATTATTTAAGATATATATATATAATATATATATATATATATATATATATATATATATATATATATTATATTCAAACTTTTCTGATAAATTTTGGTTTTTTTAAATATAAAATACTAGTTTTGATCGGTTGGATTGCTGAAATTGTTTTTAATTTTTGCTACAATAATATAATATTTTAATTCTTATATTTAAAAAAAAGATTAATTCTTACGCTATTGACAAAAACTCTTCTAGAATAAAATTAAATTAAATTAAAAAAAAAAAAAAAAGAGGCGGAAAAAGTCGGATAACTGCCATGAACGGCCAGGATTGAAATCAGAAATCTGGAATTTATCCAACTTCACAGTCCGTATCCCATTTTCCTACGGTCAGAGTCGCCCTGTTCCATACCCCAACGTCGATCCGTATGGTAAAGCCCTTAGTCTCAGCCTGCTTTCGCCATCATTCCTTCATTCATTGCTGCGCTCTGGAAAATCATAGAAAACTCGCTTAAGCTGCAGCTGATTCGCTTTCGTAGGCTGAAACTTCAATCTCTTTCTGCATTGGCGCCTCCGCCTGATTCCGTTTCCACTCATAAATTGTTCCGCTTCCTTCCTCCAAACTCGGAGATTACTGTTTTGAGCTGCTTTTTACGACGCATCTGTTTCTCGGTCTTGATCTTTCGTGTTGGTCAATGTTGTACCTCTGAATTTGTCTTTTGTTTCTCTGTTGTTGGTTGTATCGACGGCGAGAGAAGAAGCTGA

mRNA sequence

ATGTTTAGCCAAATTCGAGGGTCAATTGCCATGTGTTCTGCTTATGATCGAAACACTGGCCGAGGCAAAGGGACCATTGTCAAGTCTCAGCCTGCTTTCGCCATCATTCCTTCATTCATTGCTGCGCTCTGGAAAATCATAGAAAACTCGCTTAAGCTGCAGCTGATTCGCTTTCGTAGGCTGAAACTTCAATCTCTTTCTGCATTGGCGCCTCCGCCTGATTCCGTTTCCACTCATAAATTGTTCCGCTTCCTTCCTCCAAACTCGGAGATTACTGTTTTGAGCTGCTTTTTACGACGCATCTGTTTCTCGGTCTTGATCTTTCGTGTTGGTCAATGTTGTACCTCTGAATTTGTCTTTTGTTTCTCTGTTGTTGGTTGTATCGACGGCGAGAGAAGAAGCTGA

Coding sequence (CDS)

ATGTTTAGCCAAATTCGAGGGTCAATTGCCATGTGTTCTGCTTATGATCGAAACACTGGCCGAGGCAAAGGGACCATTGTCAAGTCTCAGCCTGCTTTCGCCATCATTCCTTCATTCATTGCTGCGCTCTGGAAAATCATAGAAAACTCGCTTAAGCTGCAGCTGATTCGCTTTCGTAGGCTGAAACTTCAATCTCTTTCTGCATTGGCGCCTCCGCCTGATTCCGTTTCCACTCATAAATTGTTCCGCTTCCTTCCTCCAAACTCGGAGATTACTGTTTTGAGCTGCTTTTTACGACGCATCTGTTTCTCGGTCTTGATCTTTCGTGTTGGTCAATGTTGTACCTCTGAATTTGTCTTTTGTTTCTCTGTTGTTGGTTGTATCGACGGCGAGAGAAGAAGCTGA

Protein sequence

MFSQIRGSIAMCSAYDRNTGRGKGTIVKSQPAFAIIPSFIAALWKIIENSLKLQLIRFRRLKLQSLSALAPPPDSVSTHKLFRFLPPNSEITVLSCFLRRICFSVLIFRVGQCCTSEFVFCFSVVGCIDGERRS
Homology
[Close]
BLAST of Carg00347 vs. NCBI nr
Match: KAG7031690.1 (hypothetical protein SDJN02_05731, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.9 bits (686), Expect = 2.4e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MFSQIRGSIAMCSAYDRNTGRGKGTIVKSQPAFAIIPSFIAALWKIIENSLKLQLIRFRR 60
           MFSQIRGSIAMCSAYDRNTGRGKGTIVKSQPAFAIIPSFIAALWKIIENSLKLQLIRFRR
Sbjct: 1   MFSQIRGSIAMCSAYDRNTGRGKGTIVKSQPAFAIIPSFIAALWKIIENSLKLQLIRFRR 60

Query: 61  LKLQSLSALAPPPDSVSTHKLFRFLPPNSEITVLSCFLRRICFSVLIFRVGQCCTSEFVF 120
           LKLQSLSALAPPPDSVSTHKLFRFLPPNSEITVLSCFLRRICFSVLIFRVGQCCTSEFVF
Sbjct: 61  LKLQSLSALAPPPDSVSTHKLFRFLPPNSEITVLSCFLRRICFSVLIFRVGQCCTSEFVF 120

Query: 121 CFSVVGCIDGERRS 135
           CFSVVGCIDGERRS
Sbjct: 121 CFSVVGCIDGERRS 134

[Close]
BLAST of Carg00347 vs. NCBI nr
Match: KAG6608060.1 (Long chain acyl-CoA synthetase 9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MFSQIRGSIAMCSAYDRNTGRGKGTIVK 29
          MFSQIRGSIAMCSAYDRNTGRGKGTIVK
Sbjct: 1  MFSQIRGSIAMCSAYDRNTGRGKGTIVK 28

The following BLAST results are available for this feature:
BLAST of Carg00347 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031690.12.4e-68100.00hypothetical protein SDJN02_05731, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608060.11.0e-05100.00Long chain acyl-CoA synthetase 9, chloroplastic, partial [Cucurbita argyrosperma... [more]
BLAST of Carg00347 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00347 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00347 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00347-RACarg00347-RAmRNA