Carg00283 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00283
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein CP31B
Location	Carg_Chr04: 6368326 .. 6370556 (-)
RNA-Seq Expression	Carg00283
Synteny	Carg00283

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAGTTCATGTTCATCTGTTATATATCTCAGTAGCTTAGTATTTCCTTTCGAACTCTTAGATTGAATGACATTGATGAACTATGATTAATTCATTATGAAGTTTTCTGGAAATGGTTTGTCTGTGGTTATTTACTGTTAATGCTCGAGGAGGAAGAAACTGTATTACTAATATGAAATTGTTGATTAAGGAATGACTTGTTCTTGATGAAGCTTCAAATCTCTTTCTCTTGTGTTAGTTCCTTTGTAGATATTGTGTACACAACAATGCCTAAAGAGCTAATTATGCGTTTAATATACTTATCTGAGGAATTTGTAATGGTATCACGTCTTAGTCCAATCTGTATTATCCAGACTGATAGATGCATTAGTGCTGCCCCCTCCCTCCCTTTTGATCACATAAATTTACTTGTGTTCTTGCAATATTCCCCAGTGAAGTAAGTGAAAATGGTGGCTACAAAAGTGTATGTTGGAGGCATTCCATATTATTCAACTGAGGACGATATTTGTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTGATTTTCAAGGTATGGTAATCTGATTAATATGAACTTTCATTCCTCTTAGTAGCTAAGATCAATCAAGTCTTGAAGATGTTTCATGATTTATACTTTGTTCTAAGATCATAGGCTTACTGAGAGTGAATGAGTGCAAGTGTTGGGTCCTTTTTGAAGTTAATTGAGGTTAGAAAATGCGGATTTATAAGGCTTATTATGACACTAAGATTTCCGACCAAGACGTATATGAACATTATTAAAGAATATTCATATGAGCATACAATTAGCCTTCTCGCACTAAATAGTATATAGCATATCATCTTGTAAGTCTGCTTCATTTGGCTTTTTAAGCTAGAATCAGTCAAGATTCCATCAGTGTTGAAAAAGTATCAAATATTGCTGGTGTGTTCTTCTATGTAATAGAAATAGTTACCAGAGCTGTGTTGGGGCTGGTGTGGGGATTACAATTTTACTGAATTTTGGATTTCTGGAGGTCAGATTTCTTTAGTTTTCGAGTTACCTTACCACTGTTTACCATTTGCAGACCGAAGCTGCAGCAAAACGAGCACTAGCCATGGATGGAGCTGACATGTGAGAATATGAACAATTTGATATCATGTCGCCATTATACTTTCTGTCCTTTTCCACCATCTTATTACAAATTATTTCTTATGTAGGGGGGGGGCCTCTTCCTTAAAGTACAGCCCTACAAGGGAACTCGAACGAGTAAAGCAGTCGATTCCTCTTTGGGAATCGTGGAAGGCTACAACAGAATCTATCTGGGGAATCTGTCGTGGGATGTAACAGAGGATGATCTGAAGAAACTCTTCTCTCACTGTAACACTGCATTGATACGTTTTGGCATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAGGCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAAAACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAACTGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG

mRNA sequence

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGACGATATTTGTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTGATTTTCAAGGGGGGGGGCCTCTTCCTTAAAGTACAGCCCTACAAGGGAACTCGAACGAGTAAAGCAGTCGATTCCTCTTTGGGAATCGTGGAAGGCTACAACAGAATCTATCTGGGGAATCTGTCGTGGGATGTAACAGAGGATGATCTGAAGAAACTCTTCTCTCACTGTAACACTGCATTGATACGTTTTGGCATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAGGCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAAAACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAACTGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG

Coding sequence (CDS)

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGACGATATTTGTAGCTTTTTTGAAAGCTGTGGCACTATAACCGAAGTTGATTGTATGAAGTTTCCAGAGAGTGGCAAATTCAGAGGCATTGCAATATTGATTTTCAAGGGGGGGGGCCTCTTCCTTAAAGTACAGCCCTACAAGGGAACTCGAACGAGTAAAGCAGTCGATTCCTCTTTGGGAATCGTGGAAGGCTACAACAGAATCTATCTGGGGAATCTGTCGTGGGATGTAACAGAGGATGATCTGAAGAAACTCTTCTCTCACTGTAACACTGCATTGATACGTTTTGGCATGGACAAGGAGACGACAGGGGAGTTTCGTGGCTATGCCCACGTGGATTTCGCTGACAGCGTCTTGTTAAAAACGGCTCTCAAGTTAGACCAGGAAACAATTCATGGCAGGCCTGTCAAGGTAAGATGTGCAGTTCCAAAGAAAGGAACAGAAAGAGGAGGAGGAGAAGCAGCAGCAGCAGCAGAAATAGAAACAGAAACACATCCAGAAACGCAAGCAAAACCTGTGCCTGAAATGAAGGAAGCTGAAACTGGATTAAGCTCTATAAGTGGTAAGATAAGAAGAAGAACATGCTACGAATGTGGTGAAAAAGGCCATCTTTCTTCCAACTGCCCAAAGAAGCTGCTTGCGGATTCAATTGCAAGTTAG

Protein sequence

MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEKQGDDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKGGGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEMKEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS

Homology

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BLAST of Carg00283 vs. NCBI nr
Match: KAG7031626.1 (hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 664.8 bits (1714), Expect = 3.9e-187
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
           MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA
Sbjct: 1   MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60

Query: 61  TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
           TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK
Sbjct: 61  TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120

Query: 121 QGDDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKGGGLFLKVQPYKGTRTSKAVD 180
           QGDDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKGGGLFLKVQPYKGTRTSKAVD
Sbjct: 121 QGDDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKGGGLFLKVQPYKGTRTSKAVD 180

Query: 181 SSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFAD 240
           SSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFAD
Sbjct: 181 SSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFGMDKETTGEFRGYAHVDFAD 240

Query: 241 SVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEM 300
           SVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEM
Sbjct: 241 SVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEAAAAAEIETETHPETQAKPVPEM 300

Query: 301 KEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS 344
           KEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS
Sbjct: 301 KEAETGLSSISGKIRRRTCYECGEKGHLSSNCPKKLLADSIAS 343

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BLAST of Carg00283 vs. NCBI nr
Match: XP_038891335.1 (protein gar2 [Benincasa hispida])

HSP 1 Score: 466.5 bits (1199), Expect = 2.0e-127
Identity = 274/427 (64.17%), Postives = 297/427 (69.56%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK K+KLREKLAESLISSVAGK SN D SGEPDTESRR++LKELLGT  RHGPRLSKRE
Sbjct: 5   NKKLKKKLREKLAESLISSVAGKDSNGDVSGEPDTESRRKSLKELLGTVCRHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK-------------------------------EEDNEKAKKL 131
           KRRES+I TASDGNKD+KK                               EE+NEKAKKL
Sbjct: 65  KRRESLILTASDGNKDEKKEDGNRGLGETKREKKRKRDEGAKEKNLVDGLEENNEKAKKL 124

Query: 132 -------KKKKKKSNKKTKSGEEEKEKQG------------------------------- 191
                  KKKKKKSNKK K+GEEE+EKQG                               
Sbjct: 125 KKKKKQQKKKKKKSNKKAKNGEEEEEKQGEVSGNEVKVQVEETHYNIGSEFNENLATKVY 184

Query: 192 ---------DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG------------- 251
                    +DDIC FFESCGTITE+DCMKFPESGKFRGIAIL FK              
Sbjct: 185 VGGIPYYSTEDDICCFFESCGTITEIDCMKFPESGKFRGIAILTFKTEAAAKRALAWDGA 244

Query: 252 --GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALI 311
             GGLFLKVQPYKGTRT++AVD S  IVEGYNRIYLGNLSWDVTEDDLKKLF++C  A I
Sbjct: 245 DMGGLFLKVQPYKGTRTNRAVDFSPAIVEGYNRIYLGNLSWDVTEDDLKKLFANCKIASI 304

Query: 312 RFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEA 344
           RFGMDKE TGEFRGYAHVDF+D+V LKTALKLDQ  IHGRPVK+RCAVPKKGTER GGEA
Sbjct: 305 RFGMDKE-TGEFRGYAHVDFSDNVSLKTALKLDQNIIHGRPVKIRCAVPKKGTERRGGEA 364

[Close]

BLAST of Carg00283 vs. NCBI nr
Match: XP_008461639.1 (PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo])

HSP 1 Score: 452.6 bits (1163), Expect = 3.0e-123
Identity = 266/429 (62.00%), Postives = 292/429 (68.07%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAGK +N D SGE DTES R++LKELLGTA+ HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEEDN-------------------------------EKAKKL 131
           KRRES+I T SDGNK++KKEE+N                               EKAKKL
Sbjct: 65  KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 124

Query: 132 --------KKKKKKSNKKTKSGEEEKEKQGD----------------------------- 191
                   KKKKKKSNKK  +GEEEKEKQGD                             
Sbjct: 125 KNKKKQQQKKKKKKSNKKENNGEEEKEKQGDVSGNDVKGQVEETHYNIGSEFNENLATKV 184

Query: 192 -----------DDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG------------ 251
                      DDICSFFESCGTITE+DCMKFPESGKFRGIAIL FK             
Sbjct: 185 YVGGIPYYSTEDDICSFFESCGTITEIDCMKFPESGKFRGIAILSFKTEAAAKRALACDG 244

Query: 252 ---GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTAL 311
              GGLFLKVQPYKGTR ++A D S G+VEGYNRIY+GNLSWDVTEDDLKKLFS+C    
Sbjct: 245 ADMGGLFLKVQPYKGTRKNRAADFSPGLVEGYNRIYMGNLSWDVTEDDLKKLFSNCKIGS 304

Query: 312 IRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGE 344
           IRFGMDKE TGEFRGYAHVDF+DS+ LKTALKLDQE IHGRPVK+RCAVPKKGTE+GGG 
Sbjct: 305 IRFGMDKE-TGEFRGYAHVDFSDSISLKTALKLDQEIIHGRPVKIRCAVPKKGTEKGGGG 364

[Close]

BLAST of Carg00283 vs. NCBI nr
Match: XP_022139342.1 (protein gar2 [Momordica charantia])

HSP 1 Score: 447.6 bits (1150), Expect = 9.8e-122
Identity = 266/433 (61.43%), Postives = 292/433 (67.44%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLI++VAGK S  D SGEPD+ESR ++L+ELLG  + HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLIATVAGKDSVGDVSGEPDSESRPQSLRELLGAVSHHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEED--------------------------------NEKAKK 131
           KRRES+   ASD   +++K+ED                                NEKAKK
Sbjct: 65  KRRESLTLVASDEKNNEEKKEDENQRLGGTKREXKRKRDEEGAEKSALDGSAENNEKAKK 124

Query: 132 LKKKKKKSNKKTK-------SGEEEKEKQG------------------------------ 191
           LKKKKKK  KKTK       +GEEEKEKQG                              
Sbjct: 125 LKKKKKKKKKKTKKSNKKADNGEEEKEKQGGEGGNEVEGLEETHDNVGSVVIENVATKVY 184

Query: 192 ---------DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG------------- 251
                    +DDICSFFESCGTITEVDCMKFPESGKFRGIAIL FK              
Sbjct: 185 VGGIPYYSTEDDICSFFESCGTITEVDCMKFPESGKFRGIAILSFKTEAAAKRALAMDGA 244

Query: 252 --GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALI 311
             GGLFLKVQPYKGTR +KAVD S GI+EGYNRIYLGNLSWDVTEDDLKKLFS+C  A I
Sbjct: 245 DMGGLFLKVQPYKGTRLNKAVDFSPGIMEGYNRIYLGNLSWDVTEDDLKKLFSNCKIASI 304

Query: 312 RFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEA 344
           RFGMDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPKKGTERG G  
Sbjct: 305 RFGMDKE-TGEFRGYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKKGTERGAG-G 364

[Close]

BLAST of Carg00283 vs. NCBI nr
Match: XP_022943192.1 (protein gar2 [Cucurbita moschata])

HSP 1 Score: 439.5 bits (1129), Expect = 2.7e-119
Identity = 266/447 (59.51%), Postives = 290/447 (64.88%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQK REKLAESLISS+AGK SN D SGEP+++SR ++LKELLG   RHG RLSKRE
Sbjct: 5   NKKLKQKFREKLAESLISSIAGKVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
           KRRESVI TASDG  D++K                                EED+EKAKK
Sbjct: 65  KRRESVISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124

Query: 132 L----------KKKKKKSNKKTKSGEEEKEKQG--------------------------- 191
           L          KKKK+K  KK KS EEEKEKQG                           
Sbjct: 125 LKLKKNKMNKKKKKKQKKQKKQKSNEEEKEKQGGEDGNEVVGQVEETHDNIGSQVNENVA 184

Query: 192 -------------DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG--------- 251
                        +DDICSFFESCGTITEVDCM FPESGKFRGIAIL FK          
Sbjct: 185 TKVYVGGIPYYSTEDDICSFFESCGTITEVDCMMFPESGKFRGIAILSFKTEAAAKRALA 244

Query: 252 ------GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCN 311
                 GGLFLKVQPYKGTR++KAVD S GIVEGYNRIYLGNLSWDVTEDDLKKLF++C 
Sbjct: 245 MDGADMGGLFLKVQPYKGTRSNKAVDFSPGIVEGYNRIYLGNLSWDVTEDDLKKLFANCK 304

Query: 312 TALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERG 344
            A IRFGMDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT RG
Sbjct: 305 IASIRFGMDKE-TGEFRGYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKQGTARG 364

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BLAST of Carg00283 vs. ExPASy Swiss-Prot
Match: Q9M3B8 (Phragmoplastin interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHIP1 PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-48
Identity = 157/425 (36.94%), Postives = 205/425 (48.24%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQ++R+ LAESL  SV+            +T  + ++LK LL +++ H PRLSKRE
Sbjct: 5   NKKLKQRIRQDLAESLSVSVS------------ETNPQSQSLKLLLDSSS-HKPRLSKRE 64

Query: 72  KRRESVIFTASD-------------------------------------GNKDQKKEEDN 131
           KRR    F   D                                     G++  K+E+  
Sbjct: 65  KRRNCETFAREDDEIRENEVGNGGSSEKTDTKIKKKRKRDDAVEVDELEGDEGTKEEQKP 124

Query: 132 EKAK-KLKKKKKKSNKKTKSGEE-----------------EKEKQG-------------- 191
           +K K K KKKK+K NK  K  EE                  KE+ G              
Sbjct: 125 QKKKNKKKKKKRKVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQ 184

Query: 192 --DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFL 251
             +D+I S+F SCG I +VDC   PE G F GIA + F                 G  +L
Sbjct: 185 STEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYL 244

Query: 252 KVQPYKGTRT----SKAVDSSLG--IVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIR 311
            +Q Y  T T     +   S     +V+GYNR+Y+GNL+WD TE D++KLFS C    +R
Sbjct: 245 TIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVR 304

Query: 312 FGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEA 337
            G +KE TGEF+GYAHVDF DSV +  ALKLDQ+ I GRPVK+ CA+  +  T+   GE 
Sbjct: 305 LGKNKE-TGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCALKDRPATDHTPGET 364

[Close]

BLAST of Carg00283 vs. ExPASy Swiss-Prot
Match: Q7XTT4 (Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 6.6e-04
Identity = 61/251 (24.30%), Postives = 109/251 (43.43%), Query Frame = 0


Query: 34  KHSNADASGEPDTESRRETLKELLGTATRHG-----PRLSKRE--KRRESVIFTASDGNK 93
           K  + D+S E   ES  E  ++ +  +T  G     P+ +K+E     ES    +SD + 
Sbjct: 310 KDESEDSSDESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESS 369

Query: 94  DQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEKQGDDDICSFFESCGTITEVDCMKFPE 153
           D+  ++   +AKK     ++S+   +S EE+ + + D+                  K P+
Sbjct: 370 DEDVKQKQTQAKKQAPVAQESSSSDESSEEDSDMESDEP----------------AKTPQ 429

Query: 154 SGKFRGIAILIFKGGGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDL 213
               +  A+ +        K     G    K   S+     G   +++GNL ++V ++ +
Sbjct: 430 K---KETAVSVGSN-----KSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNVEQEQV 489

Query: 214 KKLFSHCNTAL-IRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCA 273
           K+ F      + IRF   ++  G FRG+ HV+FA +   K AL+L    + GRPV++  A
Sbjct: 490 KQFFQEAGEVVDIRFSTFED--GNFRGFGHVEFATAEAAKKALELAGHDLMGRPVRLDLA 534

Query: 274 VPKKGTERGGG 277
             +     G G
Sbjct: 550 RERGAYTPGSG 534

[Close]

BLAST of Carg00283 vs. ExPASy TrEMBL
Match: A0A1S3CF29 (RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.5e-123
Identity = 266/429 (62.00%), Postives = 292/429 (68.07%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAGK +N D SGE DTES R++LKELLGTA+ HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEEDN-------------------------------EKAKKL 131
           KRRES+I T SDGNK++KKEE+N                               EKAKKL
Sbjct: 65  KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 124

Query: 132 --------KKKKKKSNKKTKSGEEEKEKQGD----------------------------- 191
                   KKKKKKSNKK  +GEEEKEKQGD                             
Sbjct: 125 KNKKKQQQKKKKKKSNKKENNGEEEKEKQGDVSGNDVKGQVEETHYNIGSEFNENLATKV 184

Query: 192 -----------DDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG------------ 251
                      DDICSFFESCGTITE+DCMKFPESGKFRGIAIL FK             
Sbjct: 185 YVGGIPYYSTEDDICSFFESCGTITEIDCMKFPESGKFRGIAILSFKTEAAAKRALACDG 244

Query: 252 ---GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTAL 311
              GGLFLKVQPYKGTR ++A D S G+VEGYNRIY+GNLSWDVTEDDLKKLFS+C    
Sbjct: 245 ADMGGLFLKVQPYKGTRKNRAADFSPGLVEGYNRIYMGNLSWDVTEDDLKKLFSNCKIGS 304

Query: 312 IRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGE 344
           IRFGMDKE TGEFRGYAHVDF+DS+ LKTALKLDQE IHGRPVK+RCAVPKKGTE+GGG 
Sbjct: 305 IRFGMDKE-TGEFRGYAHVDFSDSISLKTALKLDQEIIHGRPVKIRCAVPKKGTEKGGGG 364

[Close]

BLAST of Carg00283 vs. ExPASy TrEMBL
Match: A0A6J1CDP4 (protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 4.7e-122
Identity = 266/433 (61.43%), Postives = 292/433 (67.44%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLI++VAGK S  D SGEPD+ESR ++L+ELLG  + HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLIATVAGKDSVGDVSGEPDSESRPQSLRELLGAVSHHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEED--------------------------------NEKAKK 131
           KRRES+   ASD   +++K+ED                                NEKAKK
Sbjct: 65  KRRESLTLVASDEKNNEEKKEDENQRLGGTKREXKRKRDEEGAEKSALDGSAENNEKAKK 124

Query: 132 LKKKKKKSNKKTK-------SGEEEKEKQG------------------------------ 191
           LKKKKKK  KKTK       +GEEEKEKQG                              
Sbjct: 125 LKKKKKKKKKKTKKSNKKADNGEEEKEKQGGEGGNEVEGLEETHDNVGSVVIENVATKVY 184

Query: 192 ---------DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG------------- 251
                    +DDICSFFESCGTITEVDCMKFPESGKFRGIAIL FK              
Sbjct: 185 VGGIPYYSTEDDICSFFESCGTITEVDCMKFPESGKFRGIAILSFKTEAAAKRALAMDGA 244

Query: 252 --GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALI 311
             GGLFLKVQPYKGTR +KAVD S GI+EGYNRIYLGNLSWDVTEDDLKKLFS+C  A I
Sbjct: 245 DMGGLFLKVQPYKGTRLNKAVDFSPGIMEGYNRIYLGNLSWDVTEDDLKKLFSNCKIASI 304

Query: 312 RFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERGGGEA 344
           RFGMDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPKKGTERG G  
Sbjct: 305 RFGMDKE-TGEFRGYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKKGTERGAG-G 364

[Close]

BLAST of Carg00283 vs. ExPASy TrEMBL
Match: A0A6J1FSC3 (protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.3e-119
Identity = 266/447 (59.51%), Postives = 290/447 (64.88%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQK REKLAESLISS+AGK SN D SGEP+++SR ++LKELLG   RHG RLSKRE
Sbjct: 5   NKKLKQKFREKLAESLISSIAGKVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
           KRRESVI TASDG  D++K                                EED+EKAKK
Sbjct: 65  KRRESVISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124

Query: 132 L----------KKKKKKSNKKTKSGEEEKEKQG--------------------------- 191
           L          KKKK+K  KK KS EEEKEKQG                           
Sbjct: 125 LKLKKNKMNKKKKKKQKKQKKQKSNEEEKEKQGGEDGNEVVGQVEETHDNIGSQVNENVA 184

Query: 192 -------------DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG--------- 251
                        +DDICSFFESCGTITEVDCM FPESGKFRGIAIL FK          
Sbjct: 185 TKVYVGGIPYYSTEDDICSFFESCGTITEVDCMMFPESGKFRGIAILSFKTEAAAKRALA 244

Query: 252 ------GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCN 311
                 GGLFLKVQPYKGTR++KAVD S GIVEGYNRIYLGNLSWDVTEDDLKKLF++C 
Sbjct: 245 MDGADMGGLFLKVQPYKGTRSNKAVDFSPGIVEGYNRIYLGNLSWDVTEDDLKKLFANCK 304

Query: 312 TALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKGTERG 344
            A IRFGMDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+GT RG
Sbjct: 305 IASIRFGMDKE-TGEFRGYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKQGTARG 364

[Close]

BLAST of Carg00283 vs. ExPASy TrEMBL
Match: A0A6J1JA04 (protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 9.2e-118
Identity = 264/450 (58.67%), Postives = 290/450 (64.44%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQK REKLAESLISS+AG+ SN D SGEP+++SR ++LKELLG   RHG RLSKRE
Sbjct: 5   NKKLKQKFREKLAESLISSIAGRVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
           KRRES I TASDG  D++K                                EED+EKAKK
Sbjct: 65  KRRESFISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124

Query: 132 LKK--------------KKKKSNKKTKSGEEEKEKQG----------------------- 191
           LKK              KK+KSN+K K+ EEEKEKQG                       
Sbjct: 125 LKKNKMNKKKKKKQKKQKKQKSNEKAKNSEEEKEKQGGEDGNEVLGQVEETHDNIGSQVN 184

Query: 192 -----------------DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG----- 251
                            +DDICSFFESCGTITEVDCM FPESGKFRGIAIL FK      
Sbjct: 185 ENVATKVYVGGIPYYSTEDDICSFFESCGTITEVDCMMFPESGKFRGIAILSFKTEAAAK 244

Query: 252 ----------GGLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLF 311
                     GGLFLKVQPYKGTR++KAVD S GIVEGYNRIYLGNLSWDVTEDDLKKLF
Sbjct: 245 RALAMDGADMGGLFLKVQPYKGTRSNKAVDFSPGIVEGYNRIYLGNLSWDVTEDDLKKLF 304

Query: 312 SHCNTALIRFGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAVPKKG 344
           + C  A IRFGMDKE TGEFRGYAHVDF+DSV LKTALKLDQETIHGRPVK+RCAVPK+G
Sbjct: 305 ASCKIASIRFGMDKE-TGEFRGYAHVDFSDSVSLKTALKLDQETIHGRPVKIRCAVPKQG 364

[Close]

BLAST of Carg00283 vs. ExPASy TrEMBL
Match: A0A0A0KLT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 6.8e-113
Identity = 260/483 (53.83%), Postives = 286/483 (59.21%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAG+ +N   SGE DTES R++LKELLGTA+ +GPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK---------------------------EEDNEKAKKLKK-- 131
           KRRES++ T SDGNK +KK                           EEDNEKAKKLK   
Sbjct: 65  KRRESLVLTGSDGNKKEKKEDENQGLGEKKRKRNEGVKEKNAVDGLEEDNEKAKKLKNKK 124

Query: 132 --------KKKKSNKKTKSGEE-------------------------------------- 191
                   KKKKSNKK  +GEE                                      
Sbjct: 125 KQQQKKKMKKKKSNKKENNGEEEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEK 184

Query: 192 --------------------EKEKQGD--------------------------------- 251
                               EKEKQGD                                 
Sbjct: 185 EKEKEKEKEKEKEKEKEKEKEKEKQGDVSGNDVKGQVEETHYNIGSEFDENLATKVYVGG 244

Query: 252 -------DDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------G 311
                  DDICSFFESCGTITE+DCMKFPESGKFRGIAIL FK                G
Sbjct: 245 IPYYSTEDDICSFFESCGTITEIDCMKFPESGKFRGIAILSFKTEAAAKRALACDGADMG 304

Query: 312 GLFLKVQPYKGTRTSKAVDSSLGIVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIRFG 344
           GLFLKVQPYKGTR ++A D S G+VEGYNRIY+GNLSWDVTEDDLKKLF +C  A IRFG
Sbjct: 305 GLFLKVQPYKGTRKNRAADFSPGLVEGYNRIYIGNLSWDVTEDDLKKLFVNCKIASIRFG 364

[Close]

BLAST of Carg00283 vs. TAIR 10
Match: AT3G55340.1 (phragmoplastin interacting protein 1 )

HSP 1 Score: 194.1 bits (492), Expect = 1.8e-49
Identity = 157/425 (36.94%), Postives = 205/425 (48.24%), Query Frame = 0


Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQ++R+ LAESL  SV+            +T  + ++LK LL +++ H PRLSKRE
Sbjct: 5   NKKLKQRIRQDLAESLSVSVS------------ETNPQSQSLKLLLDSSS-HKPRLSKRE 64

Query: 72  KRRESVIFTASD-------------------------------------GNKDQKKEEDN 131
           KRR    F   D                                     G++  K+E+  
Sbjct: 65  KRRNCETFAREDDEIRENEVGNGGSSEKTDTKIKKKRKRDDAVEVDELEGDEGTKEEQKP 124

Query: 132 EKAK-KLKKKKKKSNKKTKSGEE-----------------EKEKQG-------------- 191
           +K K K KKKK+K NK  K  EE                  KE+ G              
Sbjct: 125 QKKKNKKKKKKRKVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQ 184

Query: 192 --DDDICSFFESCGTITEVDCMKFPESGKFRGIAILIFKG---------------GGLFL 251
             +D+I S+F SCG I +VDC   PE G F GIA + F                 G  +L
Sbjct: 185 STEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYL 244

Query: 252 KVQPYKGTRT----SKAVDSSLG--IVEGYNRIYLGNLSWDVTEDDLKKLFSHCNTALIR 311
            +Q Y  T T     +   S     +V+GYNR+Y+GNL+WD TE D++KLFS C    +R
Sbjct: 245 TIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVR 304

Query: 312 FGMDKETTGEFRGYAHVDFADSVLLKTALKLDQETIHGRPVKVRCAV-PKKGTERGGGEA 337
            G +KE TGEF+GYAHVDF DSV +  ALKLDQ+ I GRPVK+ CA+  +  T+   GE 
Sbjct: 305 LGKNKE-TGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCALKDRPATDHTPGET 364

The following BLAST results are available for this feature:

BLAST of Carg00283 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031626.1	3.9e-187	100.00	hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038891335.1	2.0e-127	64.17	protein gar2 [Benincasa hispida]	[more]
XP_008461639.1	3.0e-123	62.00	PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo]	[more]
XP_022139342.1	9.8e-122	61.43	protein gar2 [Momordica charantia]	[more]
XP_022943192.1	2.7e-119	59.51	protein gar2 [Cucurbita moschata]	[more]

BLAST of Carg00283 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B8	2.6e-48	36.94	Phragmoplastin interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHIP1 PE...	[more]
Q7XTT4	6.6e-04	24.30	Nucleolin 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0620700 PE=2 SV=2	[more]

BLAST of Carg00283 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CF29	1.5e-123	62.00	RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194...	[more]
A0A6J1CDP4	4.7e-122	61.43	protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1	[more]
A0A6J1FSC3	1.3e-119	59.51	protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1	[more]
A0A6J1JA04	9.2e-118	58.67	protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1	[more]
A0A0A0KLT8	6.8e-113	53.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1	[more]

BLAST of Carg00283 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55340.1	1.8e-49	36.94	phragmoplastin interacting protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..117
None	No IPR available	GENE3D	4.10.60.10		coord: 311..336 e-value: 2.5E-7 score: 32.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..306
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 13..339
None	No IPR available	PANTHER	PTHR23236:SF24	PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED	coord: 13..339
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 191..263 e-value: 6.9E-15 score: 65.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 192..261 e-value: 2.1E-11 score: 43.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 190..267 score: 13.583659
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 318..334 e-value: 2.1E-4 score: 30.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 317..334 e-value: 4.5E-6 score: 26.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 319..334 score: 10.707618
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 170..289 e-value: 1.5E-18 score: 69.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 187..275
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 123..159
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 313..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00283-RA	Carg00283-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding