Carg00240 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00240
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGATA type zinc finger transcription factor family protein
LocationCarg_Chr04: 6084006 .. 6085422 (+)
RNA-Seq ExpressionCarg00240
SyntenyCarg00240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCAGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGGTACATCACTTAAGCTTCGATGTACATGATTACGGAGCACTTTTTTGAGTCAGAATGTGAGAACTTTTCTAAAATGATTTGTTAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTAGTATGTTCCAAACTTGGTCGAATTTAGAAGACACTCTACATCATGGATCTTGTAGCTATTGCTTTTTACTAACATTTTCTGTACTTCTCTTTTTCTACAGCTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGGTAAATTTAAACCCAATGCTGCAATTAGTTGTGATTGAATTTATAAACAGCCTGCTCATACCGTAGCCTCTTGTTGGTTCCAGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAAAAGACATTAAAAAGATATTCAAATATTTAAAACCCTCTTAATCACATCAATAGTCAATTTTCACTCTCTATTTGAACTGTCTGTATATATATGTTGCACCGAATTATCTTTTTGCGGTCGTTTGAATTTGTTTTGCATACCATTGTTTCAACATTTACTTATCGACCTCTATAAGAAAGGGATATTCTTTAAAGCTACTGCATCTAAATGAGTTGGTTTTCTGAATGGCTTGAATGTGGCTCTTGTTTGAGACAATTAGTGAACTGATGATATATAAGCTTTGAGGAACTGTGGAAGTTGCATGTTCTTAGTTTTCTTTATCTAAGTATTTCCTGCTGACGTAGAAATGGTTCCATCTCAATTTTGAAGTAGTTTTGCTGGTATTGGCACTTTGTATGCATCAGTGCTACAGTTATTTTATCTGCCGGGCATTGCTTGTATGCAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAG

mRNA sequence

ATGACATCAGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAG

Coding sequence (CDS)

ATGACATCAGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAG

Protein sequence

MTSGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK
Homology
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BLAST of Carg00240 vs. NCBI nr
Match: KAG7031583.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 474.6 bits (1220), Expect = 5.0e-130
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 

Query: 1   MTSGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLS 60
           MTSGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLS
Sbjct: 1   MTSGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLS 60

Query: 61  ADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSE 120
           ADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSE
Sbjct: 61  ADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSE 120

Query: 121 KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSP 180
           KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSP
Sbjct: 121 KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSP 180

Query: 181 SNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK 229
           SNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK
Sbjct: 181 SNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK 228

[Close]
BLAST of Carg00240 vs. NCBI nr
Match: KAG6600951.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 468.8 bits (1205), Expect = 2.7e-128
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 

Query: 4   GEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADG 63
           GEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADG
Sbjct: 15  GEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADG 74

Query: 64  VAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPT 123
           VAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPT
Sbjct: 75  VAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPT 134

Query: 124 PELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNY 183
           PELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNY
Sbjct: 135 PELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNY 194

Query: 184 AALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK 229
           AALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK
Sbjct: 195 AALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK 239

[Close]
BLAST of Carg00240 vs. NCBI nr
Match: XP_022957291.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM domain-containing protein WLIM2b [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 5.9e-107
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 217 RQVATSDPDTSK 229
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]
BLAST of Carg00240 vs. NCBI nr
Match: XP_023549296.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303.1 LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.6 bits (1015), Expect = 2.9e-106
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 217 RQVATSDPDT 227
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]
BLAST of Carg00240 vs. NCBI nr
Match: XP_022987406.1 (LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM domain-containing protein WLIM2b [Cucurbita maxima])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 217 RQVATSDPDTSK 229
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]
BLAST of Carg00240 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.0e-86
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 217 RQVATS 223
           R  A +
Sbjct: 181 RSAAAA 186

[Close]
BLAST of Carg00240 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.7e-85
Identity = 145/187 (77.54%), Postives = 167/187 (89.30%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK+CFKCSHC   L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKS-SEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLE 156
           HFEQLFKE+G+FSKNF S AK  ++KPTPEL R+PS+ A MFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 157 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALM 216
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 217 KRQVATS 223
           KR  A +
Sbjct: 181 KRATAAA 187

[Close]
BLAST of Carg00240 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.7e-70
Identity = 121/186 (65.05%), Postives = 153/186 (82.26%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GT  KCKAC+KTVY +D L+ +G  +HKSCF+C+HC GTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+GN+SKNF   A  +EKP   LTR+PSK +S FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+ ++A   
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 217 RQVATS 223
           R+ A+S
Sbjct: 181 RRSASS 184

[Close]
BLAST of Carg00240 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.1e-67
Identity = 117/177 (66.10%), Postives = 142/177 (80.23%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQ KC AC+KTV+ +D L+ADGV +HK+CFKCSHC G L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE G+FSK F    +S++K   EL R+PSK  S FSGTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA 214
           +T+E ++YHKSCFKCSHGGC L+ S+YAAL+G+LYCK HF QLF EKGSYNH+ K +
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKS 174

[Close]
BLAST of Carg00240 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.7e-67
Identity = 111/181 (61.33%), Postives = 147/181 (81.22%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GT  KC  C+KTVY VD LS +G+ +HKSCF+C+HC GTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+GNFSKNF    +  +   PELTR+PSK +S+F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF----QPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           + +E + +HK+CF+C+HGGC+L+ S+YA+LD +LYC+HHF+QLF EKG+Y H++++A  +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 177

Query: 217 R 218
           R
Sbjct: 181 R 177

[Close]
BLAST of Carg00240 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.9e-107
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 217 RQVATSDPDTSK 229
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]
BLAST of Carg00240 vs. ExPASy TrEMBL
Match: A0A6J1JGT3 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.2e-106
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 217 RQVATSDPDTSK 229
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]
BLAST of Carg00240 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.3e-103
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 217 RQVATSDPDTSK 229
           RQ ATSDPD SK
Sbjct: 181 RQAATSDPDPSK 192

[Close]
BLAST of Carg00240 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.4e-101
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE GNFSKNFLS AKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 217 RQVATSDPD 226
           RQ ATS PD
Sbjct: 181 RQAATSVPD 189

[Close]
BLAST of Carg00240 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.3e-101
Identity = 180/192 (93.75%), Postives = 185/192 (96.35%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTRSPS+AASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL+GILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 217 RQVATSDPDTSK 229
           RQ ATSD D SK
Sbjct: 181 RQAATSDSDPSK 192

[Close]
BLAST of Carg00240 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 217 RQVATS 223
           R  A +
Sbjct: 181 RSAAAA 186

[Close]
BLAST of Carg00240 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 217 RQVATS 223
           R  A +
Sbjct: 181 RSAAAA 186

[Close]
BLAST of Carg00240 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 217 RQVATS 223
           R  A +
Sbjct: 181 RSAAAA 186

[Close]
BLAST of Carg00240 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 217 RQVATS 223
           R  A +
Sbjct: 181 RSAAAA 186

[Close]
BLAST of Carg00240 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0 

Query: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 217 RQVATS 223
           R  A +
Sbjct: 181 RSAAAA 186

The following BLAST results are available for this feature:
BLAST of Carg00240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031583.15.0e-130100.00LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. arg... [more]
KAG6600951.12.7e-128100.00LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022957291.15.9e-10799.48LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM do... [more]
XP_023549296.12.9e-10699.47LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303.... [more]
XP_022987406.11.9e-10598.96LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM doma... [more]
BLAST of Carg00240 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M0472.0e-8679.03LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
O041931.7e-8577.54LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
O808392.7e-7065.05LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P... [more]
Q7F9R92.1e-6766.10LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q1ECF54.7e-6761.33LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P... [more]
BLAST of Carg00240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GYT72.9e-10799.48LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587... [more]
A0A6J1JGT39.2e-10698.96LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962... [more]
A0A0A0KQF54.3e-10395.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1[more]
A0A6J1DT641.4e-10195.77LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A1S3CIM82.3e-10193.75LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141... [more]
BLAST of Carg00240 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G55770.11.5e-8779.03GATA type zinc finger transcription factor family protein [more]
AT3G55770.21.5e-8779.03GATA type zinc finger transcription factor family protein [more]
AT3G55770.31.5e-8779.03GATA type zinc finger transcription factor family protein [more]
AT3G55770.41.5e-8779.03GATA type zinc finger transcription factor family protein [more]
AT3G55770.51.5e-8779.03GATA type zinc finger transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 143..195
e-value: 4.7E-12
score: 56.0
coord: 45..97
e-value: 4.8E-13
score: 59.3
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 144..199
e-value: 1.8E-10
score: 40.9
coord: 46..101
e-value: 1.6E-11
score: 44.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 46..80
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 44..104
score: 13.573
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 142..202
score: 12.5434
NoneNo IPR availableGENE3D2.10.110.10Cysteine Rich Proteincoord: 40..110
e-value: 1.1E-20
score: 75.6
coord: 138..208
e-value: 1.5E-19
score: 71.9
NoneNo IPR availablePANTHERPTHR24206:SF94LIM DOMAIN-CONTAINING PROTEIN WLIM2Bcoord: 37..222
NoneNo IPR availablePANTHERPTHR24206OS06G0237300 PROTEINcoord: 37..222
NoneNo IPR availableCDDcd09441LIM2_SF3coord: 144..204
e-value: 2.45343E-37
score: 122.964
NoneNo IPR availableCDDcd09440LIM1_SF3coord: 42..104
e-value: 5.63126E-43
score: 137.596
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 72..112
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 170..209
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 136..169
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 38..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00240-RACarg00240-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051017 actin filament bundle assembly
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005886 plasma membrane
molecular_function GO:0051015 actin filament binding
molecular_function GO:0046872 metal ion binding