Carg00218 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTGGCGCATTCTTTCACTTTCCATTGTTCTTAACACGCGCTCACTTTTACCTCCTTTTTAGAACTCTCCGACTCTCTTCCTCACCGTGCTTCCACTTTCCTCCTCCTCCGCCGCCGCTGCCGGAGCCGTTTTCTGTACAGAGTCATAGAGAGGAAAACTCTGAAGCCGACTGGTTTTATTGTCCATCGCAGGAGGACAGCTCTTCCGGTGCCTTTTGGAAGTTGGAGAGGCGGCTCCGACAACCTATGGCTGAGTTGACTCAACCGGAGGTCTATTGGCCCACGGCTCTGCAGGTGTGGAAGACGTTGTTGAACTGGTTGGCGTTCTTCTTTCAGATCTTCGTTCGAATCCTCAGAGCTTTTGAACACCTTCGGCTTCTTTCTTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAACTTCCTGACCAGGAGTTGCTCGCCGACTCCACCGTTGATATCGACTCCGTTGAAGGCGAGAAGGAGTCCGTTGGGCTTAGGGAGAAACTGACGGTATTGTTATTTTTCTTGTTGATTACTCGTTATGATTGTGGTTTTCCCACCGAAATTGTTTGCTGAAAATCGAGTGTTCTGCGACGTGTTTGTGTTTGGTTTCAATTTGTGTTCGATTTTTCTTGAGACTGTGGTATGATTTTGCTGCTTGGGTTTGCGCAATTTTGTGATCATTGGGTCGTGCATTCTCCTTCTTCTATGAGTTTATCTCAATGGTTTAGATGTATGTATAAGTTTGATTAATCTTTCTGAAATTTGGAGTAGTATTTAACCAGGTCTGGCCTTTGTCTGTGTGAGAAGATTGATTGATAACATTTTGGTGAAGCGGAGATGTACTGTTTCTTGATTAAAATACGGACAGGAAAGCTTCAACTTCATTGCCTATGGTTCTGCTGTCTTGCATGCTGACGATACATTTATTAGATGAAAGAATCTAGCCCTGAAACTTTCTGTGAATGCTTATCTCAATTTGAAGGAACTATGTTCTTTCATTTTAGAACTGAACGTTATGAACAATGATTTGTCTTAAAATGTTTGCCAGTGCTCTGTATAACTTATTATGTTAGAAGTTTGTGGAGATTCTGTGTGAAGTTCAAATGGTTAAAAAATTTACATTCATTTCCATAAAGGCGCACGAAGGATTGTGCTTTTTTTCTCTATTGGGTGGGGCGGGAATCATTCATGTTTCCTGGAATTCCTCTTATTGTTTTGTCCCCATTGTGCCTTCCTTTCTAGATTCCACATCTGACATTGGACAATTACAGATAGTTCTTGACTTGGATGAAACTCTCGTATGTTCATACGAGACATCTACCTTGCCTGCTGTTATTCGCAATCAAGCTATCGAAGCTGGACTGAAGTTTTTTGATCTCGAGTGCTTTTCTTCAGACGAGGTATTTTCCTTTTCAGGAGCCTTGTACTGTTTCATTTTTCTGAGTTTTAGTTTAACTATCTTTCCTGGTTATTCTCCTATTTGAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCGGGTCTGCACGATTTCTTAAACCAACTAAGTGTATTCGCCAATCTTGTACTCTTCACAGCTGGTCTTGAAGGTTTGTACACTCTACTATCCATCATATTATCAAATAATGACCTTCTATTACCCATGAACGGAAAAAGTCATCGAATCTGAAGGATTCCATTTATGTATATGCCTCAGGGTATGCAAGGCCTCTTGTTGATAGGATAGATGAAGAAAATCTATTTAGTCTTCGGCTGTATAGGCCTTCAACTATTAGCACGTAAGTACTGTTTCTGCTATTTTGTTCTACTTTAATTTCTATTTGGGTCCGGCAGAGTTTCAGTCATTAAGCTTCTAGTCAATAAAGATATAATACTACTAGAGTTATCGAATCTCAAGGAATCGAACTTGCCCTTTCCAAAAACAAGTGTAAATCATTCAGGAGTTTGAGTAGAACTTATTAACTACTTGTTTTTTTATTCCAAATTTCATTATTTATTGATGCTGCAGGCTATGATTTTGGTTTGATTTTACACTTATAAACATAATTTTTATATCATCTTAATTGATTTTGAATGATTAAAAACATGTTTTAGAGTAATTTAAAACAGGTCAAAAGTGATTTTAATTCTTTCAAAATCACTCCCAAACCCACTTTGATGGAATTCTACTTGAGTCCATATTTCAGTTTGAATGTTTCAAGTGTCATAATTTTGTTCTGGATAATGTTACGCAAACCTACTCATTTCTGGAAAGGATTTCAAATATTGGATGGATGAAACCTGACAAACCTTCTAAAAAAAAGTTTAAACCATTAATTATTTTCTCCCCGTAAAATCTGTGTTCGTTATATAATCTACAGGGAATACGGAGATCACGTGAAGGATCTCTCCGGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAACAATCCTTTCAGTTTTTTATTGCAACCTCTGAATGGAATTCCTTGCATTTCATTTTCTGCAGGGCAACCGCACGATTCACAGGTGGGAAATCTTGAAAATTCTGGATCTTCCAGCAACAGTAGTGCATCTTGACAATATTTCAAATTGTGACCAATTTTTTTCTGTTGTTTGTTCTCCGTATACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTCTCGCTGCAGAACGACGTCAGGCCGGTGCTGTATGAAAGATTTCATATGCCCGAATGGTTTCAGAAGCATGGAATTCCAACCTAAGTTAAATGAAGATTTGTGCAAGAAAAAAGGTATATTCTTCTCTGCACCATGTCAACAGTTAGCACAGTTAGCTTGTTCTAAGGGCAGCACCTTCATGAGTCAGATTTTGATTCTTGATCTTTTGTATAGCTTTATATTGTACATCATAGATAAAGTTTCATCCAAATGTTTGAAATTAGTATATAGTATTAGAATTGTAAATTTGTAGGAATTCTGATTTGTAACTTATCCATGCAATGTTGTTGGATATGTTTGTAGGAATTTTCTTTTTACTTTTACCAATAAACACCAGGAGTTTCTCCTCCTTCGGTTGCTTTAACTGTTGTGGTTTCTTCAAAATATTTA TATTGGCGCATTCTTTCACTTTCCATTGTTCTTAACACGCGCTCACTTTTACCTCCTTTTTAGAACTCTCCGACTCTCTTCCTCACCGTGCTTCCACTTTCCTCCTCCTCCGCCGCCGCTGCCGGAGCCGTTTTCTGTACAGAGTCATAGAGAGGAAAACTCTGAAGCCGACTGGTTTTATTGTCCATCGCAGGAGGACAGCTCTTCCGGTGCCTTTTGGAAGTTGGAGAGGCGGCTCCGACAACCTATGGCTGAGTTGACTCAACCGGAGGTCTATTGGCCCACGGCTCTGCAGGTGTGGAAGACGTTGTTGAACTGGTTGGCGTTCTTCTTTCAGATCTTCGTTCGAATCCTCAGAGCTTTTGAACACCTTCGGCTTCTTTCTTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAACTTCCTGACCAGGAGTTGCTCGCCGACTCCACCGTTGATATCGACTCCGTTGAAGGCGAGAAGGAGTCCGTTGGGCTTAGGGAGAAACTGACGATAGTTCTTGACTTGGATGAAACTCTCGTATGTTCATACGAGACATCTACCTTGCCTGCTGTTATTCGCAATCAAGCTATCGAAGCTGGACTGAAGTTTTTTGATCTCGAGTGCTTTTCTTCAGACGAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCGGGTCTGCACGATTTCTTAAACCAACTAAGTGTATTCGCCAATCTTGTACTCTTCACAGCTGGTCTTGAAGGGTATGCAAGGCCTCTTGTTGATAGGATAGATGAAGAAAATCTATTTAGTCTTCGGCTGTATAGGCCTTCAACTATTAGCACGGAATACGGAGATCACGTGAAGGATCTCTCCGGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAACAATCCTTTCAGTTTTTTATTGCAACCTCTGAATGGAATTCCTTGCATTTCATTTTCTGCAGGGCAACCGCACGATTCACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTCTCGCTGCAGAACGACGTCAGGCCGGTGCTGTATGAAAGATTTCATATGCCCGAATGGTTTCAGAAGCATGGAATTCCAACCTAAGTTAAATGAAGATTTGTGCAAGAAAAAAGGTATATTCTTCTCTGCACCATGTCAACAGTTAGCACAGTTAGCTTGTTCTAAGGGCAGCACCTTCATGAGTCAGATTTTGATTCTTGATCTTTTGTATAGCTTTATATTGTACATCATAGATAAAGTTTCATCCAAATGTTTGAAATTAGTATATAGTATTAGAATTGTAAATTTGTAGGAATTCTGATTTGTAACTTATCCATGCAATGTTGTTGGATATGTTTGTAGGAATTTTCTTTTTACTTTTACCAATAAACACCAGGAGTTTCTCCTCCTTCGGTTGCTTTAACTGTTGTGGTTTCTTCAAAATATTTA ATGGCTGAGTTGACTCAACCGGAGGTCTATTGGCCCACGGCTCTGCAGGTGTGGAAGACGTTGTTGAACTGGTTGGCGTTCTTCTTTCAGATCTTCGTTCGAATCCTCAGAGCTTTTGAACACCTTCGGCTTCTTTCTTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAACTTCCTGACCAGGAGTTGCTCGCCGACTCCACCGTTGATATCGACTCCGTTGAAGGCGAGAAGGAGTCCGTTGGGCTTAGGGAGAAACTGACGATAGTTCTTGACTTGGATGAAACTCTCGTATGTTCATACGAGACATCTACCTTGCCTGCTGTTATTCGCAATCAAGCTATCGAAGCTGGACTGAAGTTTTTTGATCTCGAGTGCTTTTCTTCAGACGAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCGGGTCTGCACGATTTCTTAAACCAACTAAGTGTATTCGCCAATCTTGTACTCTTCACAGCTGGTCTTGAAGGGTATGCAAGGCCTCTTGTTGATAGGATAGATGAAGAAAATCTATTTAGTCTTCGGCTGTATAGGCCTTCAACTATTAGCACGGAATACGGAGATCACGTGAAGGATCTCTCCGGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAACAATCCTTTCAGTTTTTTATTGCAACCTCTGAATGGAATTCCTTGCATTTCATTTTCTGCAGGGCAACCGCACGATTCACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTCTCGCTGCAGAACGACGTCAGGCCGGTGCTGTATGAAAGATTTCATATGCCCGAATGGTTTCAGAAGCATGGAATTCCAACCTAA MAELTQPEVYWPTALQVWKTLLNWLAFFFQIFVRILRAFEHLRLLSSDSSSPSFKPLPVVELPDQELLADSTVDIDSVEGEKESVGLREKLTIVLDLDETLVCSYETSTLPAVIRNQAIEAGLKFFDLECFSSDEDCEGKPKVNYVTVFERPGLHDFLNQLSVFANLVLFTAGLEGYARPLVDRIDEENLFSLRLYRPSTISTEYGDHVKDLSGLSKDLRRIVIVDNNPFSFLLQPLNGIPCISFSAGQPHDSQLLDVILPLLKHLSLQNDVRPVLYERFHMPEWFQKHGIPT Homology
BLAST of Carg00218 vs. NCBI nr
Match: KAG7031561.1 (CTD nuclear envelope phosphatase 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 593.6 bits (1529), Expect = 9.4e-166 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
BLAST of Carg00218 vs. NCBI nr
Match: XP_022956999.1 (CTD nuclear envelope phosphatase 1 homolog [Cucurbita moschata] >KAG6600925.1 CTD nuclear envelope phosphatase 1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 592.0 bits (1525), Expect = 2.7e-165 Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 0
BLAST of Carg00218 vs. NCBI nr
Match: XP_022992859.1 (CTD nuclear envelope phosphatase 1 homolog [Cucurbita maxima]) HSP 1 Score: 587.0 bits (1512), Expect = 8.8e-164 Identity = 289/293 (98.63%), Postives = 291/293 (99.32%), Query Frame = 0
BLAST of Carg00218 vs. NCBI nr
Match: XP_023527317.1 (carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 586.3 bits (1510), Expect = 1.5e-163 Identity = 289/293 (98.63%), Postives = 292/293 (99.66%), Query Frame = 0
BLAST of Carg00218 vs. NCBI nr
Match: XP_038893440.1 (CTD nuclear envelope phosphatase 1 homolog [Benincasa hispida]) HSP 1 Score: 523.1 bits (1346), Expect = 1.6e-144 Identity = 267/299 (89.30%), Postives = 273/299 (91.30%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy Swiss-Prot
Match: Q54GB2 (CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=ctdspl2 PE=3 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.9e-21 Identity = 69/199 (34.67%), Postives = 106/199 (53.27%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy Swiss-Prot
Match: Q07949 (Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PSR2 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.5e-20 Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy Swiss-Prot
Match: Q9XYL0 (Probable C-terminal domain small phosphatase OS=Dictyostelium discoideum OX=44689 GN=fcpA PE=3 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 4.3e-20 Identity = 75/195 (38.46%), Postives = 102/195 (52.31%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy Swiss-Prot
Match: Q09695 (Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC2F7.02c PE=1 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 5.6e-20 Identity = 63/187 (33.69%), Postives = 101/187 (54.01%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy Swiss-Prot
Match: Q9VRG7 (CTD nuclear envelope phosphatase 1 homolog OS=Drosophila melanogaster OX=7227 GN=Dd PE=2 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 9.5e-20 Identity = 69/201 (34.33%), Postives = 107/201 (53.23%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy TrEMBL
Match: A0A6J1H0P3 (CTD nuclear envelope phosphatase 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458508 PE=4 SV=1) HSP 1 Score: 592.0 bits (1525), Expect = 1.3e-165 Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy TrEMBL
Match: A0A6J1JYM8 (CTD nuclear envelope phosphatase 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111489062 PE=4 SV=1) HSP 1 Score: 587.0 bits (1512), Expect = 4.3e-164 Identity = 289/293 (98.63%), Postives = 291/293 (99.32%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy TrEMBL
Match: A0A6J1K3V8 (CTD nuclear envelope phosphatase 1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491444 PE=4 SV=1) HSP 1 Score: 517.7 bits (1332), Expect = 3.2e-143 Identity = 261/296 (88.18%), Postives = 270/296 (91.22%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy TrEMBL
Match: A0A6J1FRE3 (CTD nuclear envelope phosphatase 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111447759 PE=4 SV=1) HSP 1 Score: 514.6 bits (1324), Expect = 2.7e-142 Identity = 263/296 (88.85%), Postives = 270/296 (91.22%), Query Frame = 0
BLAST of Carg00218 vs. ExPASy TrEMBL
Match: A0A5D3DVZ9 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00150 PE=4 SV=1) HSP 1 Score: 513.1 bits (1320), Expect = 7.8e-142 Identity = 259/294 (88.10%), Postives = 268/294 (91.16%), Query Frame = 0
BLAST of Carg00218 vs. TAIR 10
Match: AT3G55960.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-109 Identity = 199/299 (66.56%), Postives = 244/299 (81.61%), Query Frame = 0
BLAST of Carg00218 vs. TAIR 10
Match: AT1G29780.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 102.8 bits (255), Expect = 4.7e-22 Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 0
BLAST of Carg00218 vs. TAIR 10
Match: AT5G46410.1 (SCP1-like small phosphatase 4 ) HSP 1 Score: 96.3 bits (238), Expect = 4.4e-20 Identity = 73/194 (37.63%), Postives = 107/194 (55.15%), Query Frame = 0
BLAST of Carg00218 vs. TAIR 10
Match: AT5G46410.2 (SCP1-like small phosphatase 4 ) HSP 1 Score: 96.3 bits (238), Expect = 4.4e-20 Identity = 73/194 (37.63%), Postives = 107/194 (55.15%), Query Frame = 0
BLAST of Carg00218 vs. TAIR 10
Match: AT4G18140.3 (SCP1-like small phosphatase 4b ) HSP 1 Score: 95.5 bits (236), Expect = 7.5e-20 Identity = 81/226 (35.84%), Postives = 116/226 (51.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|