Carg00189 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00189
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 5815110 .. 5818315 (+)
RNA-Seq ExpressionCarg00189
SyntenyCarg00189
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCCCTCTCCGTTAATCTTCCAACAAACTCTCTCGTCATACTCGTCTCCGCCTAATATCACCTCTCCCTGTTTCTTGCATTGCCGGAAAGCGCTCGAGAAACTCTGTCGTGGAGGTACCAGTTGAGGATTCCGGTGCTGCCGTGGACGAGCTGCTGGAACTTCCATGGCTTTAAGCTCGCCGTTTCGATCTCTTCATCTGCTAATTTTAGGCCTAGGTAAGGATTTGAGCTTTCGAATCCGGCTTCTAGTGTTTTTCCAGTTCCGACTTCTATTATAGGGTTGTCTGGTGATTTTCTCATTGAGACGCTCATTATGTTTGTTTGTAGAGTTGGAGTGAGTTGCAGTGAAATTCGTGATGGAAAATGCTTGTTGGATCGGCCGACTCTTCGTTTGGACAGCAGCGTATCGTTCACGAGTTGGATGATGTTGCACCTGTAAGAATTCGAGGGAGGTACGTTTTAATTTCCATTGTCAATGATACGTGAGAATCTTTAATATGAATTAGCTTGTTTGAACAGCTTTGGAATTAAGTGATCTAGAAAGTGCTTCTAGTCGTTACTTTTGGTGCGAGAGAGAAGTTAAATTCAATCGTCATAGATACGTGAGAATCCTTATCATCGATTACTTCTAATAGCTTGATCGGTTTGGTATCTATTTTTCAAGAATTTGATGGTAGTTCTTTTATTACAATTAGTGGGTGAGAGAGAAGAAATTCGTTCTTAGCATGCAAAAATTAGCTTCAAAGTTCAAAATACCTTATGTTGTCAACGTGAACCCTTAGATTAATCCAATTTTCTTGAACCTCAGCCTCGTAATTGAACTGCAGAACTCCTTCTAGCTGGTGCTGATTTAGAGAAAATTGCAATCTTTTCATCAGTTGAAGGACTGCTTTTGTTCTCAATGCGATCCATTAAAATGACTGGGCAATAGAGTTGAACTTTCCATAGCCTATGTTTTGAAAATGAATAAGAGAACAAAGGTGAGGGTGTTTCTTGGTATGAATGTTCTCCCTTTTTTTCATTCTATAGCTTTTTTTCTCTGTAAGTTGGAGAGTATTTTTGTAACTCCTTTGAAGCGGGCCTTCCATCTTTTCCTACTTTTGTTGTAATTTTCTATCATTTATGTAGTTGTTTCTTATATATAAAAAAAAAAAAGGGGACGAAATTGAAAGTTTAAAAGTGACTCTATAAAACACAATTATCAAAGAACCTATACAAACTTTTACTGATGATGAAATTCCCATATGTAGTCAAATATAGTTGGCAACACGTTTAAATTAGAGATCTGTCATGTTTGTCACTAAGAAAGAAAGTGAACAAGTCTGAAAGTGATCTCAGACTATTGGTCTGTCCATTTCTAATGATTTCTTATGAGTTAAGGAATTGAAAGATGGAGAATCTCTTTGAATTCCAGCCTCCTAGTTTCGGTGTAAAATGTCTTGTGTTTGTTTGGCCAATAAGTTAACCAGATCCAACCTCTAATCTCCCACTCCATAGTTTTCCCTCTTGCCTTTCCATCAATCTTCCACCACACACTCTCTCCATACTCGTCTCCTGCAAATACGACCCCTCCCTGTTTGTTAAAAGGCCTGTTGGCGCTCGAGTAACGGTCTCGAAACCAAGCTTTAGGGTTTATGAGTGTAAGTTTTGATGGCTTGGTGGAGGCCACCTCTTTCCCATCCGAACTGTCATGAAGGTACCAGTTAAGGGTTGCAGCATTGCCATGGACGAACTGCTCAAATTTCCATGGCTTCAAGCTCACAATTACAGTCTCCCCTACTGCTAATTTGAGGCCTGGGAACGGTGTTGCAGATTCAAATCCAGCCTCAAAGGTTTTTTCAGTTCCGATCTCAACTTTGGGGTTGTTTGAGGATTTGCTTACTGAGACACTCATTATGTTTGTATGAAAAGTTGGAGTGAGTTGTAGAGAAATTCGTGATGGAAAATGCTTTTCTGATCCACCAACTCCTCGCTCTGATAAGAGAGTCTCGCTCACAAGCCGAATGATGTCACACCTGTAAAAATCCAGTGTACATTTTAAACTCAATTGTCAAAGATACGTGTGAATCTTGAACACTAATAGCTTGTAAGATCAGATTTGCATCTGCTTTTCAAGAAATTGCCTCTATTTTTATTGTTACTGTCAGTAAGAAAGGGAATGAATTTGTTCTTAGCAGTAAGAAAGATAGTTCTAACTTCAAAATTCAATATACCTTATGTTATCAACGTGCACCCTCAGATCAATCCACTTTTCTCGAGTCACGGCCCTGTAATTGAATTGCAGAACCCCTTCAAGCTGGTGATAATTTAAAGAGAACTGCAATCTTTCATCAGTTGAAGGATTGCTCGAGTTCTCAATATTATCCATTGCAATGATAGGGCAATAGAGTTGAACTTTCCACAGCCCATACGTCGAAAATGAATAAGAGAACAAAGGTGAGGGTGTTTTCAAAGTACGACCCTTGGCCTTAAGTTCCAATATCCAGTTGGTGATAGCAAGGTTTATTGACCTCATCCATTGTTGTTCTAGATTAGACCCCAACAGTTTCATAAGCACCTTTGATGTCTGCCGTGACGTACAATTTGCCAAATGATGCTTGAGAGTCGCAAGACAATTTGAACGGAGGTCGATCGGAGCTTCATAGATGCAGATTAGGAATATGAGAGTAAGAAATATGTGATTGAAGATTTCTTTCAAAGAGGAAGTGATGTCAAGTTTGAGAAGGTTATGGCTAGAATTCTGTTTATGGTTTGAGCCATAGTAAAGAACATCACGAACACAATTAAGCAAGAGAGTGGACATGCTTTCTTTGTTCAATAAGTTGGAGGTTTTTGTGCTGGTCTTCAGTGGTTGTGATGTCCAAAGGGAGATATGAAAGCTGAAATCTGCAGTAACTGAGAAAGTAATGGTTGGGGAATGAAGGGTTTTTGCTGCAACAATTTTGAGCGAGGAATTGGTTGAACTTGAAGAGCATATGGATGTAGAAATGGAAGTAGTTTTCCATTGAGAAAGTGGTGGTAGGTTCTGTATCCAGGAATAAACGTCAGGAAAGCTACAGGAGGCCATGGCAACATGCAAGTATTGAACTCTCTGTCCTTTCTCTGTAAGGAAAAATATGGTCCTTTCTCCCATATTTGTAGGCTCTTTCATGGATGGAAGCAAAGCAAAGCAAAGATTCTTGGAAGGAAGGTCGATTGAAAAGG

mRNA sequence

TCTCCCCTCTCCGTTAATCTTCCAACAAACTCTCTCGTCATACTCGTCTCCGCCTAATATCACCTCTCCCTGTTTCTTGCATTGCCGGAAAGCGCTCGAGAAACTCTGTCGTGGAGGTACCAGTTGAGGATTCCGGTGCTGCCGTGGACGAGCTGCTGGAACTTCCATGGCTTTAAGCTCGCCGTTTCGATCTCTTCATCTGCTAATTTTAGGCCTAGAGTTGGAGTGAGTTGCAGTGAAATTCGTGATGGAAAATGCTTGTTGGATCGGCCGACTCTTCGTTTGGACAGCAGCGTATCGTTCACGAGTTGGATGATGTTGCACCTGTACCAGTTAAGGGTTGCAGCATTGCCATGGACGAACTGCTCAAATTTCCATGGCTTCAAGCTCACAATTACAGTCTCCCCTACTGCTAATTTGAGGCCTGGGAACGGTGTTGCAGATTCAAATCCAGCCTCAAAGGTTCTGTATCCAGGAATAAACGTCAGGAAAGCTACAGGAGGCCATGGCAACATGCAAGCTCTTTCATGGATGGAAGCAAAGCAAAGCAAAGATTCTTGGAAGGAAGGTCGATTGAAAAGG

Coding sequence (CDS)

ATGATGTTGCACCTGTACCAGTTAAGGGTTGCAGCATTGCCATGGACGAACTGCTCAAATTTCCATGGCTTCAAGCTCACAATTACAGTCTCCCCTACTGCTAATTTGAGGCCTGGGAACGGTGTTGCAGATTCAAATCCAGCCTCAAAGGTTCTGTATCCAGGAATAAACGTCAGGAAAGCTACAGGAGGCCATGGCAACATGCAAGCTCTTTCATGGATGGAAGCAAAGCAAAGCAAAGATTCTTGGAAGGAAGGTCGATTGAAAAGG

Protein sequence

MMLHLYQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVADSNPASKVLYPGINVRKATGGHGNMQALSWMEAKQSKDSWKEGRLKR
Homology
[Close]
BLAST of Carg00189 vs. NCBI nr
Match: KAG7031533.1 (hypothetical protein SDJN02_05574, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 2.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MMLHLYQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVADSNPASKVLYPGINVRK 60
          MMLHLYQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVADSNPASKVLYPGINVRK
Sbjct: 1  MMLHLYQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVADSNPASKVLYPGINVRK 60

Query: 61 ATGGHGNMQALSWMEAKQSKDSWKEGRLKR 91
          ATGGHGNMQALSWMEAKQSKDSWKEGRLKR
Sbjct: 61 ATGGHGNMQALSWMEAKQSKDSWKEGRLKR 90

[Close]
BLAST of Carg00189 vs. NCBI nr
Match: KAG6600899.1 (hypothetical protein SDJN03_06132, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 6  YQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVADS 46
          YQLR+  LPWT+C NFHGFKL +++S +AN RP  GV+ S
Sbjct: 49 YQLRIPVLPWTSCWNFHGFKLAVSISSSANFRPRVGVSCS 88

[Close]
BLAST of Carg00189 vs. NCBI nr
Match: KAG7030640.1 (hypothetical protein SDJN02_04677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 6  YQLRVAALPWTNCSNFHGFKLTITVSPTANLRPGNGVA 44
          YQ R+     T+CSNFHGFKL +TVSPTANLRPG GV+
Sbjct: 46 YQFRIP----TDCSNFHGFKLAVTVSPTANLRPGVGVS 79

The following BLAST results are available for this feature:
BLAST of Carg00189 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031533.12.8e-44100.00hypothetical protein SDJN02_05574, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600899.15.7e-0560.00hypothetical protein SDJN03_06132, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030640.12.8e-0468.42hypothetical protein SDJN02_04677, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00189 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00189 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00189 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00189-RACarg00189-RAmRNA