Carg00172 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00172
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 5726021 .. 5727336 (-)
RNA-Seq ExpressionCarg00172
SyntenyCarg00172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTCAAATATAACTCCAAGTTCAAGCCAGCTTACGGAGATCATTGAAGCAGTTGAACATCGATTCCAAAGAACAATAGCCAAGCGAATCTCAGGTGCAGAACTTGATAAGAGACCTGCCCACACCTGTAAGTCACAACTCTTTCTTTTTACTTTGCTTCTCATGGAGCCATTGTAAGTCATGCTGTTCTCTTCTTATGTGCCAAAATAAAATATTAATCTAGCAAAGTGTAGGCGATATAAATGTACTTATAGTCCTTAAACTATAAGTTTTTTGTCAGGCGTTTGAAATTTTTAATTTTGTGTGTAATAAAATATATATCTGTCGTTAATTCTATTAGTGTAACACTCATGCACGTTGACTAGATTTATAAGGACGGTGGGGTAAATGGTTTTAAATGGGTTTAGGTTTTTCTTGGTGTTTCTTGTGTAGGTTTATTTTTTTTTTTTGCTGGTTTGCATGCCTCACTCGTTGACTCGTTCACCAAACACCTAAACCCACACCTAAGAAACACCAGAAAGTTTAACAATCTAATAAAAACTGTAAACTAAATAAGACGAGTTTGAAGTTTAAATTCATAACTTTGTTATGCTTAATACAATGTAAGATGAAGCAAAAGTTAAAAAGGGTACCTGAAGACAACCATCTTTGCCAGAAACTTTAATTTTTCTTCCCTGGAGCCCAAGACTATCTGCGTTCATAAATTAAGTTTCCCTTTTGATATGTGAGCAAATATTAAGTGTTCTTGTTTAAAAGGGTATAAGATAGTATAAGATAAGAAAAGATAGTATAAATAAATGTTGATCACCTTGGTTTACATCAATGACTTCCTTATTGCGTAGAATTTCCAAAGTTTGTGGAGACATGCTTCTCACATCACAACCAATCAACAGAGGGGCCTGCATGCACATTTGGATGAACTCCTGAGTTCCTTGTTTGTTAATATTCAAATAGTATTCGAACTTCTGTCCTTTTGGCTGTATACATAACAAAATTTTCAAATTCTATCATTATTGTAAAATTGAAACCTTCATTAAAGCCCATATGCTAAAATGGCTTCTGTATTCTTGATAGGTCATGCCACCATTGCCGACTTCCAACATATCTGGATCTGTCCACGCACACATGGTAAGATGGGAATTAGAGATCAACTTAGAGAACAAATGGATGAAGTTGAATGGGTTTCAAACACAATCAATCTCATACCATTCCAACCACCAGGTCCTGCATACTCTGCCCACTTATCATTGATATCTGCAATTCTAGTCATGCTTCAACCAAAACAAAAAACAATTTTTTTTGAAGTTCATTAA

mRNA sequence

ATGATGTCAAATATAACTCCAAGTTCAAGCCAGCTTACGGAGATCATTGAAGCAGTTGAACATCGATTCCAAAGAACAATAGCCAAGCGAATCTCAGGTGCAGAACTTGATAAGAGACCTGCCCACACCTGTCATGCCACCATTGCCGACTTCCAACATATCTGGATCTGTCCACGCACACATGGTAAGATGGGAATTAGAGATCAACTTAGAGAACAAATGGATGAAGTTGAATGGGTTTCAAACACAATCAATCTCATACCATTCCAACCACCAGGTCCTGCATACTCTGCCCACTTATCATTGATATCTGCAATTCTAGTCATGCTTCAACCAAAACAAAAAACAATTTTTTTTGAAGTTCATTAA

Coding sequence (CDS)

ATGATGTCAAATATAACTCCAAGTTCAAGCCAGCTTACGGAGATCATTGAAGCAGTTGAACATCGATTCCAAAGAACAATAGCCAAGCGAATCTCAGGTGCAGAACTTGATAAGAGACCTGCCCACACCTGTCATGCCACCATTGCCGACTTCCAACATATCTGGATCTGTCCACGCACACATGGTAAGATGGGAATTAGAGATCAACTTAGAGAACAAATGGATGAAGTTGAATGGGTTTCAAACACAATCAATCTCATACCATTCCAACCACCAGGTCCTGCATACTCTGCCCACTTATCATTGATATCTGCAATTCTAGTCATGCTTCAACCAAAACAAAAAACAATTTTTTTTGAAGTTCATTAA

Protein sequence

MMSNITPSSSQLTEIIEAVEHRFQRTIAKRISGAELDKRPAHTCHATIADFQHIWICPRTHGKMGIRDQLREQMDEVEWVSNTINLIPFQPPGPAYSAHLSLISAILVMLQPKQKTIFFEVH
Homology
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BLAST of Carg00172 vs. NCBI nr
Match: KAG7031517.1 (hypothetical protein SDJN02_05557, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MMSNITPSSSQLTEIIEAVEHRFQRTIAKRISGAELDKRPAHTCHATIADFQHIWICPRT 60
           MMSNITPSSSQLTEIIEAVEHRFQRTIAKRISGAELDKRPAHTCHATIADFQHIWICPRT
Sbjct: 1   MMSNITPSSSQLTEIIEAVEHRFQRTIAKRISGAELDKRPAHTCHATIADFQHIWICPRT 60

Query: 61  HGKMGIRDQLREQMDEVEWVSNTINLIPFQPPGPAYSAHLSLISAILVMLQPKQKTIFFE 120
           HGKMGIRDQLREQMDEVEWVSNTINLIPFQPPGPAYSAHLSLISAILVMLQPKQKTIFFE
Sbjct: 61  HGKMGIRDQLREQMDEVEWVSNTINLIPFQPPGPAYSAHLSLISAILVMLQPKQKTIFFE 120

Query: 121 VH 123
           VH
Sbjct: 121 VH 122

The following BLAST results are available for this feature:
BLAST of Carg00172 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031517.11.6e-63100.00hypothetical protein SDJN02_05557, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00172 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00172-RACarg00172-RAmRNA