Carg00120 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00120
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	30S ribosomal protein S17, chloroplastic
Location	Carg_Chr04: 5444651 .. 5445744 (+)
RNA-Seq Expression	Carg00120
Synteny	Carg00120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATTCTATTTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGTGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCACTGTACTCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAATCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAGTCCCATTTCTACTCCCCAATTAATTTTTTCTTTTTCATTCCAATTTAATCAACCATGTTTTCGACTCGATTTTGAGTTTCAGTTACAATATCGTGTAATTTGCTTGACTACACTGTAATACTGGATGAAATGGCTAATGTTCTCCGTATATTGAAGAATCTCGCATGTTTTCGCGAGTGTTCTTTGTGTTTGAAGAGTTTGTTCGTTCAATTTGCAAATGCATAATGTTCATTTATATTAATCTTGTCGCGTTTTTATTTCTCTGGAACTTGAACCGAGGGTACTTTAATATTTGAACGTTTATAATTTCTAATCCACTGATGAAACAAATTGAATTTTATAATATCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCGTTGTTTTATACTAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGACTATTTGTGTGATATTGTTGTTTAAACATTCTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATA

mRNA sequence

ACATTCTATTTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGTGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCACTGTACTCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAATCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCGTTGTTTTATACTAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGACTATTTGTGTGATATTGTTGTTTAAACATTCTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATA

Coding sequence (CDS)

ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT

Homology

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_022943007.1 (uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_023549349.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549358.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549366.1 uncharacterized protein LOC111807726 isoform X2 [Cucurbita pepo subsp. pepo] >KAG7031466.1 rpsQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_022989005.1 (uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharacterized protein LOC111486195 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 9.6e-49
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_038891417.1 (30S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 2.9e-45
Identity = 94/103 (91.26%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHK WVVAEILRKARIY+PPS++NQ+VSDK K SAPST+
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSKDNQIVSDKSKASAPSTS 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: KAE8649314.1 (hypothetical protein Csa_015070 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 46  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 105

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAPSTT
Sbjct: 106 RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 148

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_004137152.1 (uncharacterized protein LOC101211400 [Cucumis sativus] >XP_011653397.1 uncharacterized protein LOC101211400 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]

BLAST of Carg00120 vs. ExPASy Swiss-Prot
Match: B1I1J7 (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-21
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 HKRWVVAEILRKARI 81
          HKRW VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

[Close]

BLAST of Carg00120 vs. ExPASy Swiss-Prot
Match: A7HM43 (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKHKRWVVAEILRKARIYQPPSQENQVVSDKG 96
          PLSK KRWVV  IL ++++ + P  E  +  + G
Sbjct: 64 PLSKLKRWVVVNILERSKLSETPEIEETIDIEGG 97

[Close]

BLAST of Carg00120 vs. ExPASy Swiss-Prot
Match: Q8R7W3 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 64
          +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10 IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 65 KHKRWVVAEILRKA 79
          K KRW + E+++KA
Sbjct: 70 KEKRWRLVEVIKKA 83

[Close]

BLAST of Carg00120 vs. ExPASy Swiss-Prot
Match: B9MKH2 (30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GD+V +  +R
Sbjct: 9  KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]

BLAST of Carg00120 vs. ExPASy Swiss-Prot
Match: A4XLS1 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GD+V +  +R
Sbjct: 9  KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]

BLAST of Carg00120 vs. ExPASy TrEMBL
Match: A0A6J1FRT9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447872 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Carg00120 vs. ExPASy TrEMBL
Match: A0A6J1JP01 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486195 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.7e-49
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Carg00120 vs. ExPASy TrEMBL
Match: A0A5D3D9X1 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00680 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Carg00120 vs. ExPASy TrEMBL
Match: A0A5A7TD01 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G002330 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 153

[Close]

BLAST of Carg00120 vs. ExPASy TrEMBL
Match: A0A1S4E5I9 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]

BLAST of Carg00120 vs. TAIR 10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-34
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK+K W+VAEI++KARIY P +     VS     S+ STT
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAA-AAVSASASASSASTT 102

[Close]

BLAST of Carg00120 vs. TAIR 10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-33
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1  MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQP 84
          RPLSKHK W+V+EI++KARIY P
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSP 83

[Close]

BLAST of Carg00120 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 60.5 bits (145), Expect = 9.4e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKHKRWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]

BLAST of Carg00120 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-05
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 6   GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLS 65
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 66  KHKRWVVAEIL 76
           K  R+ V +++
Sbjct: 134 KTVRFNVLKVI 144

The following BLAST results are available for this feature:

BLAST of Carg00120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943007.1	4.3e-49	100.00	uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 unchar...	[more]
XP_022989005.1	9.6e-49	99.03	uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharac...	[more]
XP_038891417.1	2.9e-45	91.26	30S ribosomal protein S17-like [Benincasa hispida]	[more]
KAE8649314.1	3.8e-45	93.20	hypothetical protein Csa_015070 [Cucumis sativus]	[more]
XP_004137152.1	3.8e-45	93.20	uncharacterized protein LOC101211400 [Cucumis sativus] >XP_011653397.1 uncharact...	[more]

BLAST of Carg00120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1I1J7	2.3e-21	65.33	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ...	[more]
A7HM43	1.5e-20	51.06	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
Q8R7W3	3.7e-19	59.46	30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
B9MKH2	1.1e-18	57.69	30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /...	[more]
A4XLS1	1.1e-18	56.41	30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]

BLAST of Carg00120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRT9	2.1e-49	100.00	30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JP01	4.7e-49	99.03	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5D3D9X1	1.8e-45	93.20	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TD01	1.8e-45	93.20	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4E5I9	1.8e-45	93.20	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092...	[more]

BLAST of Carg00120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49400.1	1.4e-34	70.87	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	1.2e-33	79.52	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	9.4e-10	42.31	ribosomal protein S17	[more]
AT4G30800.1	7.0e-05	39.44	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 52..62 score: 49.27 coord: 62..69 score: 67.5 coord: 20..43 score: 37.58
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 6..73 e-value: 6.2E-33 score: 112.7
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..93
IPR019984	30S ribosomal protein S17	TIGRFAM	TIGR03635	TIGR03635	coord: 2..71 e-value: 3.5E-31 score: 105.1
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 1..76 score: 22.33972
None	No IPR available	GENE3D	2.40.50.140		coord: 1..98 e-value: 2.6E-34 score: 119.0
None	No IPR available	PANTHER	PTHR10744:SF1	37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	coord: 1..93
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00120-RA	Carg00120-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome