Carg00098 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00098
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 5287772 .. 5291140 (-)
RNA-Seq ExpressionCarg00098
SyntenyCarg00098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCTGTAGAAGATCTCCAATGTTGACAACAAGGGCTTCTGGATTGGGTTTTACAGCCACCCATTGCGATCCTTTCATCAGCTGCAGCCCGCCGCTGCGATCTTGATGAAGTATGGTAAGAAAATCGCTGTCCGTGTGGGGCACCAGGCCGGAAACATCGCCGGGAAATGGACAGATTGGGTAATGATTCAATCGGAGGAAGCATGTGCTTTCGTCGCAGATATCGTCAAATATTTCTTTTCGGTGGCCCAAACACTCCACTAAAACTCCTGCTAAAGATCTTGCTAACTTCGACATGGCGGTTGCCAGTTCCTCCATCACTTCCCTGGCGTTCAAGCATATAAGGTCAGTGAGTAGTGGGTTCTCCTTGTTTTTTTTTTTTTTTTTGTAATTTAGTTCAATTGTGGAAGAATGTGGCCATTTAATGCCGGTTGATTGTGATTTCGAGGTGCTATTACTTTTTGCGGTCTAGCTGTTTGTGAAAATGTCTAGACGTGTTAAACTCTTCAAGATTGCGGGATGTTGGTGAAAAGTGCATTAAAAATTATAATATAAAAGATATCTGGTTAGATTACAAACAGAACTTTTGAAATTTTCATTTATGTTCCTCAAATTTGAACTAAAATATGAATATGACATGATCATTAGATGACTTTTGGCTGAGTTGGCATGGTATCGCATAGGGTTGGATATATTAACAAGCATGCCATACCAGCCTTCTGTAAATGTGAGATTAACAAACAAAAACGTAATCTGAAATTAGTCTAAAACTTAAGAATATAATTGAACTTTTTTTAAGTCTAAAAGATCATATCGACACAACGTTTCAAGTCTTGGAACTAAATGAAAAAAATACAATACGTAAGAGAAGTATGTAGCTGGATGAAGGGTGATAAAGTTGATACCTTAAGTTAATGAACTCGCCATAGCAGGCAGCTTCAGAGACCTTTGTGAGGGAAATGTGAAAAGCTTCAGACCAAGAGAACTGGTTTGGGTGGGTTGCAGTCGGTGTTCCCCATCTGTAAGAATGATCCAAAATCCCACTTGTAGATTTTTTCTCAAAGGGTACCCCAAATAACTTCGTTTGTTCTTTGCTCATTCTGCTCAGCAGCTCTGTGCGTATCCCATGGTTTATCACTTGGAAGAATCCCCATTCTGCCGACGCTCCAAAAATTTCTCTACTGCAAGCCCTCCTCTCCTTTTCATTGCTACTTTCCAAACCTGTAAGATCAATAAGAGGAAGCTGACATTCCTCCATGACAGAGTTAATTTGTTGATTGCCATTGTTAAGTAGTTGTAATTGAGCTTTGGATTGCAAAAGCAACTCATATTGATGGAAGAGTGGTGGGTTGGAGTCCGTCATGGTAGTGTTCTCTATATTCCTTGTGGGTTTCCTACAAAAGTTATGAAAGCGAGAAGTGCTCTTTATATTCCCTGTCTTTGGAAAAGAGAAGTTGGGCTTAAGTTGTGGGGAGGAGGAAGATCACAAGTGGAATCAAACAAAGACAATAGAAGAGGATACTGTAAAGGAGCTACCATATAGTGACAATATGAAAATATGGATTCTCTCTCTTTCCATTTTCTCACAAAAAAAATTGGGAAGACGAGGTCTGTTTTGATCCCTTTTAATATTAACGATAGAAGACAAGCCTAAGGAAGTGGGAAAACAATGAGAAGGAAAGATCCAAACCTACCTTCAACTTTTTGAGTTTGGTAGACAAAAAGTTTATATTGGGACCCTTCTGTTGTTATGTAGCAACTACCAAGTTTATTCCCAATTAGGCCTCAGTGAAATAGAATGTTCCATTTCCATGATTGTTTATTTAGTTTCTTAAAATAATTGTTTATGCTCTGCGGATTCTTTCCTTTGTGCATAATTGGTGAGTATGGCTCTTAAACGCCATTGTCTTTTTCTTCTGCAGCAAACCTAACCAAACCTGCCATGTCTGGATTCTTCATTTGTTTTCTCAGGTTTATTATTTCTGCTCTTGTTGGTAGATGGATGAGGATGAGGACGATAATTTACAGGTACGTCCTGTCGAATGAAGAATCCAGACATGCAGGTTTTGTTAGGTTAAAAGATATATATATGTGTATGTGTGTGTGTATGTATGTATGTATGTATGCATATACAGATAAAGAGGCTAAAACATAGTCTTCGTTAAATCTGATTACGAAACAACATAATGTCCAAGGTTTAGATAACCTAAATTCTAAATGCATGCCGCACCATCGATCATGACATAATGAAAAACAATATATCTACTCAATAGGTTATAAAAAGGATAAAATTGTAAAACAATAAAATTGAACCAAAATTATTAAATTATAATTTGTTGTCCTTGGTGGCTCATAGAAGTAGCTTTTGAAATCAATTTTCTTTCAAATATGTATTTCTCCTACAAAATTTGAAGATTTCAATTTAATTCTATATATGTCTTTCTTTTTCTGAACTTTTATCAAATAATTTATATTAACAAAATTTTACTTACAAATTTTGTGAAGCTTTGAAGAAGGAAGATTAAAAAAAAAACAAAAAAAATTGGGAGAAATAGAGTTGCTGGCGACAGTCCAACGAAGAGATGGTAAAACAATAGAAGGAGATTTAGCCAGGTTTCCACTCGATTTTAGAGCTATTGGTTGCTGGACAGAGATTTAGACTGGTTTGGAGCAAAATCCAGTGAGTTGAAGCTTGAATTCAGCTTCAAATCAGAGAAGAAAAGAAGGAAATTCATTTTCGCTGTCTGCCTTCCGAGCGTAATTCGTGACAATCCAGCCAACCATTTGATGAATTTCTTGAGGGGTTTTGATTAGTGGATTGTGGGAAAGAGTTCCATTGAGCTGATTTTGGAAGATTTGGGTGCGAATGCGAGGTTGAATACGCTTGGCTTTTGAGTAACTGCTCGAACTTTCAAAGATAAATTCTTTCTCTACACTCAACCAATCCTTATGAATTTTGTTCCTACAGCTTCATGGCAGTGAGGAGAAGATTTTATGTGAGGAACTCAAGAGATGTAAACTATCACGCGAAGATACATTAGAGGTAAGAACGGCGATTTTTAGCCGAAGAACGAATGACTCCCTTCTTTAAATCGATCAAATTTGGTGTGTAGTCGAGGCTAATCCCTCGGGAGTTTTTGATCACCTGAGTGAAATCTTGGCTATAGTGAAAGGAATTGGGACGAATCAAAGGGGGAAGGCCGTCGTCGAAGAGCCGCCGGAGGAAGGATGTTGGCTGCCAGAGAAAATATAAACTTGTGTTCTCCTGAGGTACACGAAGTCGCCTGTAGGCAGCGTTGACCTGTCAATGGATAACCCTACCTTGACCGTCCTGGTGTATTAGCAAGATTTTGGCCATCCGTAGTTTGA

mRNA sequence

TACCTGTAGAAGATCTCCAATGTTGACAACAAGGGCTTCTGGATTGGGTTTTACAGCCACCCATTGCGATCCTTTCATCAGCTGCAGCCCGCCGCTGCGATCTTGATGAAGTATGGTAAGAAAATCGCTGTCCGTGTGGGGCACCAGGCCGGAAACATCGCCGGGAAATGGACAGATTGGGTAATGATTCAATCGGAGGAAGCATGTGCTTTCGTCGCAGATATCGTCAAATATTTCTTTTCGGTGGCCCAAACACTCCACTAAAACTCCTGCTAAAGATCTTGCTAACTTCGACATGGCGGTTGCCAGTTCCTCCATCACTTCCCTGGCGTTCAAGCATATAAGGTTTATTATTTCTGCTCTTGTTGGTAGATGGATGAGGATGAGGACGATAATTTACAGCTTCATGGCAGTGAGGAGAAGATTTTATGTGAGGAACTCAAGAGATGTAAACTATCACGCGAAGATACATTAGAGGTAAGAACGGCGATTTTTAGCCGAAGAACGAATGACTCCCTTCTTTAAATCGATCAAATTTGGTGTGTAGTCGAGGCTAATCCCTCGGGAGTTTTTGATCACCTGAGTGAAATCTTGGCTATAGTGAAAGGAATTGGGACGAATCAAAGGGGGAAGGCCGTCGTCGAAGAGCCGCCGGAGGAAGGATGTTGGCTGCCAGAGAAAATATAAACTTGTGTTCTCCTGAGGTACACGAAGTCGCCTGTAGGCAGCGTTGACCTGTCAATGGATAACCCTACCTTGACCGTCCTGGTGTATTAGCAAGATTTTGGCCATCCGTAGTTTGA

Coding sequence (CDS)

ATGGATGAGGATGAGGACGATAATTTACAGCTTCATGGCAGTGAGGAGAAGATTTTATGTGAGGAACTCAAGAGATGTAAACTATCACGCGAAGATACATTAGAGGTAAGAACGGCGATTTTTAGCCGAAGAACGAATGACTCCCTTCTTTAA

Protein sequence

MDEDEDDNLQLHGSEEKILCEELKRCKLSREDTLEVRTAIFSRRTNDSLL
Homology
[Close]
BLAST of Carg00098 vs. NCBI nr
Match: KAG7031444.1 (hypothetical protein SDJN02_05484 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MDEDEDDNLQLHGSEEKILCEELKRCKLSREDTLEVRTAIFSRRTNDSLL 51
          MDEDEDDNLQLHGSEEKILCEELKRCKLSREDTLEVRTAIFSRRTNDSLL
Sbjct: 1  MDEDEDDNLQLHGSEEKILCEELKRCKLSREDTLEVRTAIFSRRTNDSLL 50

The following BLAST results are available for this feature:
BLAST of Carg00098 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031444.11.6e-17100.00hypothetical protein SDJN02_05484 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg00098 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00098 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00098 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00098-RACarg00098-RAmRNA