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Carg00086 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGCAGGGCTTAAGCTTCTGTTTGATTCTTCCCGGTTTCTCTCTTGCTATGTTATGAAGCTTCCTTGATCGATTCCGTCTGTTCGTCTTCACTTCTGGTAATCTCCAATTCCATATTTGTCTCCCTTACAACTTGTCTTCGTTGCTGTTGATTCACTCTTTTTTGTTGATTGAGCTATTCGGCTGTACGTATATCTGGTTGTTCGTTTATTGGAAGCAGTCGTCCCTTTCGCCTTATCTTCTCCATTTTCTCACTCAGACTGTATTCTCTGCCGGGAATTTCTCGCAGGTCCTCCATCACAGCATGAAGCGTGTCTTCGACGAAATTTCAGATGACGAGTGGTCGAATCACTCTTTTAAGCCCTCTCGTGTCTTCAGCAAGCCGCAGACTCAACCTCCGATCCCTCCTCCGATTGAATCTTTTGCATACCAACCGCCGTCGCTGTATATTTCCGATGATAGCGGTGACGATTGTGTCGTAGTCATGGAAAGTTCCAAGAATTTCAAGGAAAGTTTGGAGGATGACGATGTTGAGGTTGAGGGAGTGAAGTCCTCCACGGCGATGAGTCGTGGCCGTCGATTTGTGGTGGATGATGAAGATGAAGAAAGTGAGAAGGAATTGACCGAGGTTTGTGATGTAAGGTCGACGAGTGAGGAGGAGGAGGAGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACAGGGAGGATGA ATGCAGCAGGGCTTAAGCTTCTGTTTGATTCTTCCCGCTTCCTTGATCGATTCCGTCTGTTCGTCTTCACTTCTGACTGTATTCTCTGCCGGGAATTTCTCGCAGGTCCTCCATCACAGCATGAAGCGTGTCTTCGACGAAATTTCAGATGACGAGTGGTCGAATCACTCTTTTAAGCCCTCTCGTGTCTTCAGCAAGCCGCAGACTCAACCTCCGATCCCTCCTCCGATTGAATCTTTTGCATACCAACCGCCGTCGCTGTATATTTCCGATGATAGCGGTGACGATTGTGTCGTAGTCATGGAAAGTTCCAAGAATTTCAAGGAAAGTTTGGAGGATGACGATGTTGAGGTTGAGGGAGTGAAGTCCTCCACGGCGATGAGTCGTGGCCGTCGATTTGTGGTGGATGATGAAGATGAAGAAAGTGAGAAGGAATTGACCGAGGTTTGTGATGTAAGGTCGACGAGTGAGGAGGAGGAGGAGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACAGGGAGGATGA ATGCAGCAGGGCTTAAGCTTCTGTTTGATTCTTCCCGCTTCCTTGATCGATTCCGTCTGTTCGTCTTCACTTCTGACTGTATTCTCTGCCGGGAATTTCTCGCAGGTCCTCCATCACAGCATGAAGCGTGTCTTCGACGAAATTTCAGATGACGAGTGGTCGAATCACTCTTTTAAGCCCTCTCGTGTCTTCAGCAAGCCGCAGACTCAACCTCCGATCCCTCCTCCGATTGAATCTTTTGCATACCAACCGCCGTCGCTGTATATTTCCGATGATAGCGGTGACGATTGTGTCGTAGTCATGGAAAGTTCCAAGAATTTCAAGGAAAGTTTGGAGGATGACGATGTTGAGGTTGAGGGAGTGAAGTCCTCCACGGCGATGAGTCGTGGCCGTCGATTTGTGGTGGATGATGAAGATGAAGAAAGTGAGAAGGAATTGACCGAGGTTTGTGATGTAAGGTCGACGAGTGAGGAGGAGGAGGAGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACAGGGAGGATGA MQQGLSFCLILPASLIDSVCSSSLLTVFSAGNFSQVLHHSMKRVFDEISDDEWSNHSFKPSRVFSKPQTQPPIPPPIESFAYQPPSLYISDDSGDDCVVVMESSKNFKESLEDDDVEVEGVKSSTAMSRGRRFVVDDEDEESEKELTEVCDVRSTSEEEEEEGGGGGGGGGGQGG Homology
BLAST of Carg00086 vs. NCBI nr
Match: KAG7031432.1 (Protein CHROMATIN REMODELING 19, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 328.2 bits (840), Expect = 4.4e-86 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of Carg00086 vs. NCBI nr
Match: XP_023545956.1 (LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 19 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58 Identity = 128/134 (95.52%), Postives = 128/134 (95.52%), Query Frame = 0
BLAST of Carg00086 vs. NCBI nr
Match: XP_022943065.1 (protein CHROMATIN REMODELING 19 [Cucurbita moschata]) HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58 Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg00086 vs. NCBI nr
Match: XP_022991239.1 (protein CHROMATIN REMODELING 19 [Cucurbita maxima]) HSP 1 Score: 235.0 bits (598), Expect = 5.1e-58 Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg00086 vs. NCBI nr
Match: XP_004140399.1 (protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMATIN REMODELING 19-like [Cucumis sativus] >KAE8648070.1 hypothetical protein Csa_018841 [Cucumis sativus]) HSP 1 Score: 205.7 bits (522), Expect = 3.3e-49 Identity = 103/123 (83.74%), Postives = 118/123 (95.93%), Query Frame = 0
BLAST of Carg00086 vs. ExPASy Swiss-Prot
Match: Q9ZUL5 (Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.8e-11 Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 0
BLAST of Carg00086 vs. ExPASy TrEMBL
Match: A0A6J1FXC0 (protein CHROMATIN REMODELING 19 OS=Cucurbita moschata OX=3662 GN=LOC111447914 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 8.4e-59 Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg00086 vs. ExPASy TrEMBL
Match: A0A6J1JU99 (protein CHROMATIN REMODELING 19 OS=Cucurbita maxima OX=3661 GN=LOC111487952 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 2.5e-58 Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Carg00086 vs. ExPASy TrEMBL
Match: A0A0A0KQW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272410 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 1.6e-49 Identity = 103/123 (83.74%), Postives = 118/123 (95.93%), Query Frame = 0
BLAST of Carg00086 vs. ExPASy TrEMBL
Match: A0A5A7VJ30 (Protein CHROMATIN REMODELING 19 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00210 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 1.3e-46 Identity = 100/122 (81.97%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of Carg00086 vs. ExPASy TrEMBL
Match: A0A1S3CC04 (protein CHROMATIN REMODELING 19 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499098 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 1.3e-46 Identity = 100/122 (81.97%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of Carg00086 vs. TAIR 10
Match: AT2G02090.1 (SNF2 domain-containing protein / helicase domain-containing protein ) HSP 1 Score: 69.3 bits (168), Expect = 3.4e-12 Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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