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Carg00009 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGAAGGAATTTTAATCAACCTTCTTGGTTCTTCACTCTTCAGGTAACTTCCAACCGCGTAGCGTTAGCGTGGTTTTGCAGCTTTCAGCTTTCCCTTCCACTTCCATTTCTCTGCCGCGAGCGAGCGACAGAATTTGTTTTCGAGCTTGCCAGAAACAGATAGACAGAGATGAGCGAAAATTTGAGTCGCAGATCGTCTGATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGGTACTTCCTTCAGATCTCTCTTTCTTGTCCCTTCTGTTAATTTATACTTTGCTTAATTCAATTTTTGTTTAGTTTCTATGATCCGTTCTTTGATTTTATGCAAATTCTCGTTTCCTTGTTTTTGCTTGTTCTGTTACTGGAAGCGGTTGAGGTGAATCGAATTGAGGGGGACGCAATTGACTTTAGAAGCCTTTTCTTTTCATGAATTTGTATTGAGATCTCGTTTTTTGTTTGATTTTCAATCTCCTTCCATCTTAACTAGTTGAAATCTTTGTTTGTTTATGTTTTCTTAGTTAAAATAATACTTACAGAACTTGATTGTTGTTTGAATGAAATTTGGTTGATGTATTACGATCTAAGGGGATGTGTGAATCTCAATTTCGCAATGTATAAGCGAGCCAAGCAGATGCACGAAGTAGCAGTATTACTTAATCTGTGTGTCTATATATATATATGTAAAGAATCCTTGTCGACATAAAAAACAACTTCTTGTACATGTTTTTATAGGTGTATGAAATTACAAAAACTGTACCAAAAAGCAGCCATGAAGTTTGTTCTTTCAGTGGCTACGCACAATTTTGCTAATTGAGAATGAAAATGAGGAGTTTCAGTTCACCTCTGGCTTCGTTGTTGTTTATTTCCCTTCAAACCCGTACTCATTGTTTATTGCTGAGGGAGATGCAATCATGCATTAGTATTTTTCCTGTGTATACTCCAAATCACATGGTTACTCTTGTTTTTGTGCATCTTCCATGATCTTTTATCTTGAAATGAATTTTGCTGTCGAATGATAAATGTCTAGACATCAATTAGCCAATATTGAGACATGAATACTATCTTTTGTAGCTATCTCATAACACTTCTTTTGGTTGGCTGCTACAGCCCTTTCTGATGACTCCACTCCCAAAGATAGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGAAGGATATCTGAAATTTACTTCACTGAAGTTGGTATGTCTTTGAACTCGTCATCCTTTTATTTTTCACCTGAAATAGCTTTATACATATCTGATATGCTGGAGTGGTATTGTCATGTCTTTTAGATGATATGGTTTCTCATGATGAATTCAGTATTAGAAAATCCGTCGAACGCCATATGTATGTTTCTATCCATGGCTGCATGACGAGTAATCATTTTTCTTCTCTAATTTATATCTCATTCAGTCTTTTTCTCTATGATGTTGCCATTAAGTTCTTATTATCCTTGGGAGTAACACACTAAATTATGTTTAAT TTGAAGGAATTTTAATCAACCTTCTTGGTTCTTCACTCTTCAGGTAACTTCCAACCGCGTAGCGTTAGCGTGGTTTTGCAGCTTTCAGCTTTCCCTTCCACTTCCATTTCTCTGCCGCGAGCGAGCGACAGAATTTGTTTTCGAGCTTGCCAGAAACAGATAGACAGAGATGAGCGAAAATTTGAGTCGCAGATCGTCTGATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGCCCTTTCTGATGACTCCACTCCCAAAGATAGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGAAGGATATCTGAAATTTACTTCACTGAAGTTGGTATGTCTTTGAACTCGTCATCCTTTTATTTTTCACCTGAAATAGCTTTATACATATCTGATATGCTGGAGTGGTATTGTCATGTCTTTTAGATGATATGGTTTCTCATGATGAATTCAGTATTAGAAAATCCGTCGAACGCCATATGTATGTTTCTATCCATGGCTGCATGACGAGTAATCATTTTTCTTCTCTAATTTATATCTCATTCAGTCTTTTTCTCTATGATGTTGCCATTAAGTTCTTATTATCCTTGGGAGTAACACACTAAATTATGTTTAAT ATGAGCGAAAATTTGAGTCGCAGATCGTCTGATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGCCCTTTCTGATGACTCCACTCCCAAAGATAGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGA MSENLSRRSSDFISFSALLSLLFVSALSDDSTPKDSIKSGNHPSSRSNTSSMIAIILLGLLVVVLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD Homology
BLAST of Carg00009 vs. NCBI nr
Match: KAG7031355.1 (hypothetical protein SDJN02_05395 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 186.8 bits (473), Expect = 9.3e-44 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Carg00009 vs. NCBI nr
Match: XP_016901207.1 (PREDICTED: uncharacterized protein LOC103493315 [Cucumis melo]) HSP 1 Score: 162.2 bits (409), Expect = 2.5e-36 Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0
BLAST of Carg00009 vs. NCBI nr
Match: KAE8650189.1 (hypothetical protein Csa_011006, partial [Cucumis sativus]) HSP 1 Score: 156.8 bits (395), Expect = 1.0e-34 Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0
BLAST of Carg00009 vs. NCBI nr
Match: KAG7015450.1 (hypothetical protein SDJN02_23086, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32 Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Carg00009 vs. NCBI nr
Match: XP_022929545.1 (uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929546.1 uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929547.1 uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022984816.1 uncharacterized protein LOC111482987 [Cucurbita maxima] >XP_023551749.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551750.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551751.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551752.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32 Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Carg00009 vs. ExPASy TrEMBL
Match: A0A1S4DZ07 (uncharacterized protein LOC103493315 OS=Cucumis melo OX=3656 GN=LOC103493315 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36 Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0
BLAST of Carg00009 vs. ExPASy TrEMBL
Match: A0A0A0L5F0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110610 PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 5.0e-35 Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0
BLAST of Carg00009 vs. ExPASy TrEMBL
Match: A0A6J1EUP1 (uncharacterized protein LOC111436082 OS=Cucurbita moschata OX=3662 GN=LOC111436082 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 8.0e-33 Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Carg00009 vs. ExPASy TrEMBL
Match: A0A6J1J6C2 (uncharacterized protein LOC111482987 OS=Cucurbita maxima OX=3661 GN=LOC111482987 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 8.0e-33 Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Carg00009 vs. ExPASy TrEMBL
Match: A0A5A7V4C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004510 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 5.5e-26 Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 0
BLAST of Carg00009 vs. TAIR 10
Match: AT1G09645.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 85.9 bits (211), Expect = 2.1e-17 Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0
BLAST of Carg00009 vs. TAIR 10
Match: AT1G57765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16 Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 0
BLAST of Carg00009 vs. TAIR 10
Match: AT1G57765.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1). ) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15 Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 0
BLAST of Carg00009 vs. TAIR 10
Match: AT3G53490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06 Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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