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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCACTCATGGAAAGTGTTTCAAGACAAAACATTTAAATAATTAGACGATCGAGATTGGGAAGACTTGTAAATTCATCACAGAAATCTAGAAATTTGTTGCCAGTTTCAATGGTTGAAGACTTTGAATGACTCCAGAGTGTGGAAGAGAGAAATTTTAGTTTCAACACAAAACTTGTAGATTGTGAAGCTGGTGTGGAGCAAAACTGCAGTTTTGGTTGGGAAATTCAATTTTATAAGGCTGGTTCTCATATGGGAATATACTTTGTATGCTTGAAAACTGACCATAAATATAATCTTAATCATGTTTAGTTGACATATTTCTGATCTCCAGCTATAATTGTGACGAGACGAATGCGAAAGATTTGCCCCTTGCATACAATTTCTCAAGAATCTTCTGAGGTAATCTTTTCTATATGTTTAATCCATTTTGCAATACTTATGTTGGTAATTTGATCATTGAAATATTAAAAGATTTGCCCCTTGCATATAAGGTTGCTTTTCTTTGAAACTCTATTACATCATGACTATGTTTTAAATCTGGCTAAAAATCTTTGCTGTAGTGCTTACTATAAAAGATCTCTTGCTATCATCAGATTATGCAACATTGACATATTTATATTTTTTTTGAAGGCGACGGAGAAAATGATAGACAAAGATTCAAATGTGTAAAGGTTAAAAGGACAAAACGTAAACCCTAGGCTATACATAAAAGACCAATTCTGATTCCCAGGTTTCACATGAAAGGGTTTGTTTCTTATAAAAAAGAGGTTCCGTTGGAAGCACTAGGCAGCAACTGTTTCTGCACTACCGTATATAATTCTAACTGTACAGTAGTTTTGTATCAACAGGCATTGAGTTGGTTGATACAAAAGTACCCAAAATCTATTCAGGGAAAAACAACCTAATGGCATCGCTCAAAGGGATGCCCTCTTGCGAGCTCTGA mRNA sequence ATGGCACTCATGGAAAATTGTGAAGCTGGTGTGGAGCAAAACTGCAGTTTTGGTTGGGAAATTCAATTTTATAAGGCTGCTATAATTGTGACGAGACGAATGCGAAAGATTTGCCCCTTGCATACAATTTCTCAAGAATCTTCTGAGGCGACGGAGAAAATGATAGACAAAGATTCAAATGTTAGTTTTGTATCAACAGGCATTGAGTTGGTTGATACAAAAGTACCCAAAATCTATTCAGGGAAAAACAACCTAATGGCATCGCTCAAAGGGATGCCCTCTTGCGAGCTCTGA Coding sequence (CDS) ATGGCACTCATGGAAAATTGTGAAGCTGGTGTGGAGCAAAACTGCAGTTTTGGTTGGGAAATTCAATTTTATAAGGCTGCTATAATTGTGACGAGACGAATGCGAAAGATTTGCCCCTTGCATACAATTTCTCAAGAATCTTCTGAGGCGACGGAGAAAATGATAGACAAAGATTCAAATGTTAGTTTTGTATCAACAGGCATTGAGTTGGTTGATACAAAAGTACCCAAAATCTATTCAGGGAAAAACAACCTAATGGCATCGCTCAAAGGGATGCCCTCTTGCGAGCTCTGA Protein sequence MALMENCEAGVEQNCSFGWEIQFYKAAIIVTRRMRKICPLHTISQESSEATEKMIDKDSNVSFVSTGIELVDTKVPKIYSGKNNLMASLKGMPSCEL
Homology
BLAST of Carg00004 vs. NCBI nr
Match: KAG7031351.1 (hypothetical protein SDJN02_05391, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 198.0 bits (502), Expect = 3.8e-47 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 Query: 1 MALMENCEAGVEQNCSFGWEIQFYKAAIIVTRRMRKICPLHTISQESSEATEKMIDKDSN 60 MALMENCEAGVEQNCSFGWEIQFYKAAIIVTRRMRKICPLHTISQESSEATEKMIDKDSN Sbjct: 1 MALMENCEAGVEQNCSFGWEIQFYKAAIIVTRRMRKICPLHTISQESSEATEKMIDKDSN 60
Query: 61 VSFVSTGIELVDTKVPKIYSGKNNLMASLKGMPSCEL 98 VSFVSTGIELVDTKVPKIYSGKNNLMASLKGMPSCEL Sbjct: 61 VSFVSTGIELVDTKVPKIYSGKNNLMASLKGMPSCEL 97
BLAST of Carg00004 vs. NCBI nr
Match: KAG6600711.1 (hypothetical protein SDJN03_05944, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 70.5 bits (171), Expect = 9.2e-09 Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 Query: 24 YKAAIIVTRRMRKICPLHTISQESSEATEKMIDKDSNV 62 ++ IIVTRRMRKICPLHTISQESSEATEKMIDKDSNV Sbjct: 48 FEQTIIVTRRMRKICPLHTISQESSEATEKMIDKDSNV 85
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7031351.1 | 3.8e-47 | 100.00 | hypothetical protein SDJN02_05391, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6600711.1 | 9.2e-09 | 89.47 | hypothetical protein SDJN03_05944, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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