CaUC11G217190 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G217190
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RING-box 1
Location	Ciama_Chr11: 30652972 .. 30655807 (+)
RNA-Seq Expression	CaUC11G217190
Synteny	CaUC11G217190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCAACTAGAGGAATTAAGTCCGCCGTTGCCGACGGAGGAGGAAGAAGCATTTTTATCCCGAGTTATTTATGGCCACCTTGGACTCCGACGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGGTATTTTCAAAACCCTAATCTTTGCGATAACTGCTCTCACCGTCTTGTTAACCTTCGTTCATCGAAACGCTCGTCTCTAATTCGCATGTTATTCTTTCTTAATGCAGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTAAGTTTATCATTATTTAGACCTAAGTTTTAAGATATCTGGAGTGAAAATTTTATCTATATTTATTTTAACCATCTACCATTGTTTGTTATCTAGGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACAGAGATACAATATGTGCTATTATTTTCAATGCCTTTGTTTGCATCTTATTTACGGAGGCGGATGATCGATTGAGCCTCTCTGCTGAATATTTAGAGCAATAATATTTCTAATTAGGAGGATACCAAAGTGTGGTCTATCCATATTAGTGATTTAATTACTTCAGCCACTCGACCTTTTTGTAACTATGAAGTTTGAACTAGCTTTTATTCAGTTGGATTGGAGTCTTTTTCTGTAGTTGTTTTCTTTTTGGTCAATCGCTCTACACTTAAAATTTTTTCCTACCTTAGCCAGATTGAGCCTATCTATTTGTAGTAAGCTAACCTGGAAGGCTAAAATTCTGAAAAGTGAGTGAGTTCTTGGACTTACTTATCAGAACAAGGATTTTGAGAAATAAGGATCGGATAAGGTCTATGATTTGGTCAAAGCTTTAATGTTCTTTTTGTTTGCACTCTCTAGTTTGGCTGCATTTTTTCTTTTTCTTTTTACTGGTAAGAACTGAGGAAAATATATCAGACAGAAAAGGGGAAATAAACAGCATAGGAATCGGTAAGAGAAAACCCTTTCTAGTAAAAAACATTCATGAGAAAATTCTCCGGATGAAAAGATGGAAAACCTGTTTGGTCTAAGAAAGAAAAAAAGGCAACAGTTTTGAACTCTTGAAAGAAGTAACTCCCAAAAAGCTGCAGTGTAACCGCAAGAACACAACCTAGACCACTCAATACATATAGAATTGACAATTCAAAATGACTTATTCAACCTTGAAAGGAGAAATCGTCTTCATGTTTAAAACTTCCGAAGAACTTCAATAAGAAACCTGAAGGAAGCAATACTTGACCAGCCCATCAAAGGACCTTTAGGAAGAGAAACAACGCCAACAACTAAACTACCTACCTTTCTAAGTGCTCAGGATCTTGGTGGTCTTTTAAATGTCTCTTTAAAGAGGCTGGAGGTTAATCATCAACCTTTCTAAGACCACAATAACAGATTGATGTAGAGGATGCGAACAACTAGGCTAAAACCCTACTTGCCAAATTTTTTCTTATAGGTTCTGTTTCCCTGATCTCCCTGTTGGAGGAGGTAACCACAATTCAGCATCTTTTGGTAGCTAGACAATCAGAATTGAAACGTTGAATTGACTTGTCCAATCAGGCATCTTAAATCTTCCAGACCATTTATTTTTTCCAATTGGAGTGCCTTCCAAAGTTTTTTTGGGTAGTTACATCAAGTAGTTGCAAATCTTGCAGTGGACTGGAGTGAATGTTCTGTTTCAGTTTGAGAAATTAAAAGGGACGAAATTGTTCATGGGGATGTTGATATTAATAGTTCAAATTTATGGCTATATTGACAAACATTTTGACGTTGACATATATTCTCTCTTTAATAAAGATCATGGACGCAATAGAAATTTGCAAAAAATCATTTATATTAATTGCTTAATATTAGCCATTAATCATATTGAATTCGTAAAGATGATGTTCAAGTCCGTCATTCTAGCTTCATAATGTTTTTGAGTCTGGTTAGTTAAAACTTTATCCAACTTAGAGCATGAAACATTCCCTTGCAATTATCACGAAACATTTGTTTGCCCTTTTTGCTTCGGATGTGGAATTATAGCAGGAGTCAAAGGCGTGGTGTTGAAATGTCTTGTGTTTTGTATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGGTATGCGTTTCAAGTTCTTTCCCTACCCTTATCTCACATCTTTATATGAACTTTGAAAATTTAAAGGGAGCTTTGCCATTTTTACAGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGAGATGGTCCTTAAAATTCTCATGGGGCTGTAATGGTTTTGACGATTGACTCTCCCCATTTATGATTTCTGAAAATAGCAATCTGAAGATGCATTTTGCTGCACAATTAAAGTTATCCAGAGGGTTAATGCCGCCAACTTGAATACATTATCTGATTACATTTCGGAGTTGTTTATAGAAATATGGGTAGCACTTGAACGTTAGTTTGTTTTGTTTTGATTGGGTTAGTTCTTTGTTATTCTGCTTACTAAATCTGTACTTGTATTTACTTTAACGTCTTAATTAACGTGGAAAATTTGGGTTTATTTTGGTTGCACTTCGGGTCTTGTTTATGTTAGTCGTGTAAACTTCTTCCCATAAAATTATCCGTCTTAAAAGAATGAATTATTTTATCTTA

mRNA sequence

AGCCAACTAGAGGAATTAAGTCCGCCGTTGCCGACGGAGGAGGAAGAAGCATTTTTATCCCGAGTTATTTATGGCCACCTTGGACTCCGACGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGGTATTTTCAAAACCCTAATCTTTGCGATAACTGCTCTCACCGTCTTGTTAACCTTCGTTCATCGAAACGCTCGTCTCTAATTCGCATGTTATTCTTTCTTAATGCAGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACAGAGATACAATATGAGGATACCAAAGTGTGGTCTATCCATATTATTGTTTTCTTTTTGGTCAATCGCTCTACACTTAAAATTTTTTCCTACCTTAGCCAGATTGAGCCTATCTATTTGTAGTAAGCTAACCTGGAAGGCTAAAATTCTGAAAAGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGAGATGGTCCTTAAAATTCTCATGGGGCTGTAATGGTTTTGACGATTGACTCTCCCCATTTATGATTTCTGAAAATAGCAATCTGAAGATGCATTTTGCTGCACAATTAAAGTTATCCAGAGGGTTAATGCCGCCAACTTGAATACATTATCTGATTACATTTCGGAGTTGTTTATAGAAATATGGGTAGCACTTGAACGTTAGTTTGTTTTGTTTTGATTGGGTTAGTTCTTTGTTATTCTGCTTACTAAATCTGTACTTGTATTTACTTTAACGTCTTAATTAACGTGGAAAATTTGGGTTTATTTTGGTTGCACTTCGGGTCTTGTTTATGTTAGTCGTGTAAACTTCTTCCCATAAAATTATCCGTCTTAAAAGAATGAATTATTTTATCTTA

Coding sequence (CDS)

AGCCAACTAGAGGAATTAAGTCCGCCGTTGCCGACGGAGGAGGAAGAAGCATTTTTATCCCGAGTTATTTATGGCCACCTTGGACTCCGACGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGGTATTTTCAAAACCCTAATCTTTGCGATAACTGCTCTCACCGTCTTGTTAACCTTCGTTCATCGAAACGCTCGTCTCTAATTCGCATGTTATTCTTTCTTAATGCAGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACAGAGATACAATATGAGGATACCAAAGTGTGGTCTATCCATATTATTGTTTTCTTTTTGGTCAATCGCTCTACACTTAAAATTTTTTCCTACCTTAGCCAGATTGAGCCTATCTATTTGTAGTAAGCTAACCTGGAAGGCTAAAATTCTGAAAAGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAG

Protein sequence

SQLEELSPPLPTEEEEAFLSRVIYGHLGLRRAHGSGRRGFEQFRSFIHQETQAFRDQKVERRRSLGMGYFQNPNLCDNCSHRLVNLRSSKRSSLIRMLFFLNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPKCGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Homology

[Close]

BLAST of CaUC11G217190 vs. NCBI nr
Match: KAF2598944.1 (hypothetical protein F2Q68_00007590 [Brassica cretica])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-34
Identity = 81/144 (56.25%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  S S++ S + +++      K
Sbjct: 47  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGESSSSVAPSSSSTKKAKRFEVK 106

Query: 164 CGLSILLFSFWSIAL------HLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCI 223
              ++ L++ W I +                   +  S  + +  +   VCNHAFHFHCI
Sbjct: 107 KWSAVALWA-WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI 166

Query: 224 SRWLKTRQVCPLDNSEWEFQKYGH 242
           SRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 167 SRWLKTRQVCPLDNSEWEFQKYGH 189

[Close]

BLAST of CaUC11G217190 vs. NCBI nr
Match: VDD20084.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 155.2 bits (391), Expect = 7.0e-34
Identity = 81/141 (57.45%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 102 NADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRI 161
           ++DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW                     
Sbjct: 52  SSDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW--------------------- 111

Query: 162 PKCGLSILLFSFWSIALHLK-FFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRW 221
                         + L+LK  FP      + +CS L    + + RVCNHAFHFHCISRW
Sbjct: 112 --------------VLLYLKCAFPKSRGYHILVCSNLN---RPMSRVCNHAFHFHCISRW 154

Query: 222 LKTRQVCPLDNSEWEFQKYGH 242
           LKTRQVCPLDNSEWEFQKYGH
Sbjct: 172 LKTRQVCPLDNSEWEFQKYGH 154

[Close]

BLAST of CaUC11G217190 vs. NCBI nr
Match: VDC79106.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 154.8 bits (390), Expect = 9.2e-34
Identity = 83/138 (60.14%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                  RI  
Sbjct: 67  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGE-----------------RIFT 126

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
           C + I LF                  S+S C+ +        RVCNHAFHFHCISRWLKT
Sbjct: 127 CIIYISLF------------------SISRCNMI--------RVCNHAFHFHCISRWLKT 161

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 187 RQVCPLDNSEWEFQKYGH 161

[Close]

BLAST of CaUC11G217190 vs. NCBI nr
Match: EEC73864.1 (hypothetical protein OsI_08638 [Oryza sativa Indica Group] >EEE57656.1 hypothetical protein OsJ_08095 [Oryza sativa Japonica Group])

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-33
Identity = 83/141 (58.87%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW +F                    
Sbjct: 42  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWVSF-------------------- 101

Query: 164 CGLSILLFSFWSIALHLKF---FPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRW 223
            G  + L  +     H +F   FP+   LS  I     W   + + VCNHAFHFHCISRW
Sbjct: 102 -GRDMALVEYVEFIFHKEFMSGFPSSYDLSKRITG--MW---VGEGVCNHAFHFHCISRW 156

Query: 224 LKTRQVCPLDNSEWEFQKYGH 242
           LKTRQVCPLDNSEWEFQKYGH
Sbjct: 162 LKTRQVCPLDNSEWEFQKYGH 156

[Close]

BLAST of CaUC11G217190 vs. NCBI nr
Match: KYP37005.1 (RING-box protein 1a [Cajanus cajan])

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-32
Identity = 81/138 (58.70%), Postives = 85/138 (61.59%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG           HS         
Sbjct: 44  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-----------HS--------- 103

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                         L  K + T+     S+ + L W       VCNHAFHFHCISRWLKT
Sbjct: 104 --------------LIKKAYVTILDSLCSLLNLLHW-LTFYTGVCNHAFHFHCISRWLKT 146

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 164 RQVCPLDNSEWEFQKYGH 146

[Close]

BLAST of CaUC11G217190 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.8e-32
Identity = 73/138 (52.90%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                      
Sbjct: 46  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---------------------- 105

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 106 -------------------------------------------VCNHAFHFHCISRWLKT 118

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 166 RQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of CaUC11G217190 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 72/138 (52.17%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                      
Sbjct: 36  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---------------------- 95

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 96  -------------------------------------------VCNHAFHFHCISRWLKT 108

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDN EWEFQKYGH
Sbjct: 156 RQVCPLDNREWEFQKYGH 108

[Close]

BLAST of CaUC11G217190 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 72/138 (52.17%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                      
Sbjct: 36  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---------------------- 95

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 96  -------------------------------------------VCNHAFHFHCISRWLKT 108

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDN EWEFQKYGH
Sbjct: 156 RQVCPLDNREWEFQKYGH 108

[Close]

BLAST of CaUC11G217190 vs. ExPASy Swiss-Prot
Match: Q8QG64 (RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 72/138 (52.17%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                      
Sbjct: 36  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---------------------- 95

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 96  -------------------------------------------VCNHAFHFHCISRWLKT 108

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDN EWEFQKYGH
Sbjct: 156 RQVCPLDNREWEFQKYGH 108

[Close]

BLAST of CaUC11G217190 vs. ExPASy Swiss-Prot
Match: Q9W5E1 (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-31
Identity = 71/138 (51.45%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                      
Sbjct: 36  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---------------------- 95

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 96  -------------------------------------------VCNHAFHFHCISRWLKT 108

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDN EW+FQKYGH
Sbjct: 156 RQVCPLDNREWDFQKYGH 108

[Close]

BLAST of CaUC11G217190 vs. ExPASy TrEMBL
Match: A0A3P6D607 (RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T07049H PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 81/141 (57.45%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 102 NADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRI 161
           ++DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW                     
Sbjct: 52  SSDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW--------------------- 111

Query: 162 PKCGLSILLFSFWSIALHLK-FFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRW 221
                         + L+LK  FP      + +CS L    + + RVCNHAFHFHCISRW
Sbjct: 112 --------------VLLYLKCAFPKSRGYHILVCSNLN---RPMSRVCNHAFHFHCISRW 154

Query: 222 LKTRQVCPLDNSEWEFQKYGH 242
           LKTRQVCPLDNSEWEFQKYGH
Sbjct: 172 LKTRQVCPLDNSEWEFQKYGH 154

[Close]

BLAST of CaUC11G217190 vs. ExPASy TrEMBL
Match: A0A3P5ZF26 (RING-type domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA03T10324Z PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.4e-34
Identity = 83/138 (60.14%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                  RI  
Sbjct: 67  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGE-----------------RIFT 126

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
           C + I LF                  S+S C+ +        RVCNHAFHFHCISRWLKT
Sbjct: 127 CIIYISLF------------------SISRCNMI--------RVCNHAFHFHCISRWLKT 161

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 187 RQVCPLDNSEWEFQKYGH 161

[Close]

BLAST of CaUC11G217190 vs. ExPASy TrEMBL
Match: B8AHA4 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_08638 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.9e-34
Identity = 83/141 (58.87%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW +F                    
Sbjct: 42  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWVSF-------------------- 101

Query: 164 CGLSILLFSFWSIALHLKF---FPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRW 223
            G  + L  +     H +F   FP+   LS  I     W   + + VCNHAFHFHCISRW
Sbjct: 102 -GRDMALVEYVEFIFHKEFMSGFPSSYDLSKRITG--MW---VGEGVCNHAFHFHCISRW 156

Query: 224 LKTRQVCPLDNSEWEFQKYGH 242
           LKTRQVCPLDNSEWEFQKYGH
Sbjct: 162 LKTRQVCPLDNSEWEFQKYGH 156

[Close]

BLAST of CaUC11G217190 vs. ExPASy TrEMBL
Match: B9F214 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_08095 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.9e-34
Identity = 83/141 (58.87%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW +F                    
Sbjct: 42  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWVSF-------------------- 101

Query: 164 CGLSILLFSFWSIALHLKF---FPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRW 223
            G  + L  +     H +F   FP+   LS  I     W   + + VCNHAFHFHCISRW
Sbjct: 102 -GRDMALVEYVEFIFHKEFMSGFPSSYDLSKRITG--MW---VGEGVCNHAFHFHCISRW 156

Query: 224 LKTRQVCPLDNSEWEFQKYGH 242
           LKTRQVCPLDNSEWEFQKYGH
Sbjct: 162 LKTRQVCPLDNSEWEFQKYGH 156

[Close]

BLAST of CaUC11G217190 vs. ExPASy TrEMBL
Match: A0A151R3F8 (RING-box protein 1a OS=Cajanus cajan OX=3821 GN=KK1_041846 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 81/138 (58.70%), Postives = 85/138 (61.59%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG           HS         
Sbjct: 44  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-----------HS--------- 103

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                         L  K + T+     S+ + L W       VCNHAFHFHCISRWLKT
Sbjct: 104 --------------LIKKAYVTILDSLCSLLNLLHW-LTFYTGVCNHAFHFHCISRWLKT 146

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 164 RQVCPLDNSEWEFQKYGH 146

[Close]

BLAST of CaUC11G217190 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 144.8 bits (364), Expect = 8.9e-35
Identity = 80/138 (57.97%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW               + N     
Sbjct: 46  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------EDDQNNCN--- 105

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                            K+F  L       CS    K   L+ VCNHAFHFHCISRWLKT
Sbjct: 106 -----------------KYFCILD------CS---MKDDHLEGVCNHAFHFHCISRWLKT 142

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 166 RQVCPLDNSEWEFQKYGH 142

[Close]

BLAST of CaUC11G217190 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 139.0 bits (349), Expect = 4.9e-33
Identity = 73/138 (52.90%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                      
Sbjct: 46  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---------------------- 105

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 106 -------------------------------------------VCNHAFHFHCISRWLKT 118

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLDNSEWEFQKYGH
Sbjct: 166 RQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of CaUC11G217190 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-32
Identity = 72/137 (52.55%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 105 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPKC 164
           IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG                       
Sbjct: 65  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG----------------------- 124

Query: 165 GLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKTR 224
                                                     VCNHAFHFHCISRWLKTR
Sbjct: 125 ------------------------------------------VCNHAFHFHCISRWLKTR 136

Query: 225 QVCPLDNSEWEFQKYGH 242
           QVCPLDNSEWEFQKYGH
Sbjct: 185 QVCPLDNSEWEFQKYGH 136

[Close]

BLAST of CaUC11G217190 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30
Identity = 70/138 (50.72%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 104 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLSPTHSQRYNMRIPK 163
           DIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWG                      
Sbjct: 43  DIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWG---------------------- 102

Query: 164 CGLSILLFSFWSIALHLKFFPTLARLSLSICSKLTWKAKILKRVCNHAFHFHCISRWLKT 223
                                                      VCNHAFHFHCISRWLKT
Sbjct: 103 -------------------------------------------VCNHAFHFHCISRWLKT 115

Query: 224 RQVCPLDNSEWEFQKYGH 242
           RQVCPLD  EWEFQKYGH
Sbjct: 163 RQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of CaUC11G217190 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 43.9 bits (102), Expect = 2.1e-04
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 208 CNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK 239
           CNHAFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 54  CNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of CaUC11G217190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2598944.1	1.1e-34	56.25	hypothetical protein F2Q68_00007590 [Brassica cretica]	[more]
VDD20084.1	7.0e-34	57.45	unnamed protein product [Brassica oleracea]	[more]
VDC79106.1	9.2e-34	60.14	unnamed protein product [Brassica rapa]	[more]
EEC73864.1	2.0e-33	58.87	hypothetical protein OsI_08638 [Oryza sativa Indica Group] >EEE57656.1 hypotheti...	[more]
KYP37005.1	2.3e-32	58.70	RING-box protein 1a [Cajanus cajan]	[more]

BLAST of CaUC11G217190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	6.8e-32	52.90	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
P62877	2.6e-31	52.17	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	2.6e-31	52.17	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q8QG64	2.6e-31	52.17	RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2	[more]
Q9W5E1	5.8e-31	51.45	RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1	[more]

BLAST of CaUC11G217190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6D607	3.4e-34	57.45	RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T07049H...	[more]
A0A3P5ZF26	4.4e-34	60.14	RING-type domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA03T103...	[more]
B8AHA4	9.9e-34	58.87	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_08638 PE=4...	[more]
B9F214	9.9e-34	58.87	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_08095 PE...	[more]
A0A151R3F8	1.1e-32	58.70	RING-box protein 1a OS=Cajanus cajan OX=3821 GN=KK1_041846 PE=4 SV=1	[more]

BLAST of CaUC11G217190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.2	8.9e-35	57.97	RING-box 1	[more]
AT5G20570.1	4.9e-33	52.90	RING-box 1	[more]
AT5G20570.3	2.4e-32	52.55	RING-box 1	[more]
AT3G42830.1	1.3e-30	50.72	RING/U-box superfamily protein	[more]
AT3G05870.1	2.1e-04	50.00	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 108..142 e-value: 4.5E-8 score: 33.3 coord: 205..231 e-value: 5.2E-12 score: 45.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 85..145 e-value: 1.7E-7 score: 33.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 187..241 e-value: 1.5E-13 score: 52.5
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 102..146 coord: 205..241
None	No IPR available	PANTHER	PTHR11210:SF45	OS01G0106800 PROTEIN	coord: 102..146 coord: 205..241
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 108..234 e-value: 4.81535E-36 score: 120.167
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 203..238
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..142
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 193..231 score: 8.830534

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G217190.1	CaUC11G217190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0009733	response to auxin
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding