CaUC11G213980 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G213980
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMediator of RNA polymerase II transcription subunit 32
LocationCiama_Chr11: 27225057 .. 27228786 (-)
RNA-Seq ExpressionCaUC11G213980
SyntenyCaUC11G213980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCCCTGCCAATCTTCTTCCTCCTCCGCTGGGATCTTTTCAATTTCCCCCTCTTTTCCATTTTCGTAGATTATTGTCTTCTTTGTTGATTCTGGTTTTGTTCTTCTCTTTTTCTGGCTCAGTTTTATCCTCTTCCTCTGCCCCGGCAGTATGAGATTCTCTTTTCCCCCAATTTGCTACTTCCCCATTCTCTAAAAGAGAGAGACAGATGGCTTGAATAACCCTCTGTGTACAGTACCTTTTTGGAGGCCGAACTTTGAACAGGTTTCTCCCCTCATTAACAGAAGACTTTCATCTTTCAGAGTGCCATCGCTGTTGCAATCTTTCACTTTTTGGGTTCAAAGCTTTTAACTCATGAACAAATTATTGATGGTCTGCATTTCTTAATTTGTTTTCCATTTTTATTTCCTTGAATCTTTGCATATTTTGCTGCTAAATCATCTTGAAAAGCATTAGTCCTGTGAGTTTTCCCCCCGTAGCTGTTTGGTATCCCGATGTATGTATGTATGTATGTATATCTATGTATCTATGTATCTATGTATCTATCTATATATATATATCCTTTTTCTTTTTTTTTTTTTGAGAAGAGAAACGATTTCGTTTCATTGACAGGAAGGGAGAGAACCCTAACACATCTGTAGGTGAATTACATGACGTTCTCCAATGAGAAATTAACAAAGATAGGCTATATGTATTTAAAGGGTGTTCACATTTACACCGATGCATAACATGAAAAAGAATTAAATTCATAAAGTTATTAAAGGAAGAGAAAAGACCCCTGAAAATTCTATCAAGAGCCAACTATAAAGTCTTCTTTGCCCCATGGAAAGGGTGACCCGTCAAAATTGAAGTGAGGAAATCAAAGATGGTGTTAGGCTAAGGTATGGACCAATCGAAAGTAGCAAGAATAATGTCCCAGTATCTAGAAGCAAAAGGACAGTGAGCAAATAGGTGATTAGGAATTTCTGAAGCTATACAACACATAACACACCAAGATGGAGAAAGGTGTTTATGTGTAGGAGTAGTATGGTATTAGTAAGGGCATTGGGGTAATTAGTTAGGGAGTTGGTTAGGGTATTTGGTTATTAAATAGAGGGAGGGGGGTTGAGGAAAGGAAGCAATTGTTGAGTGATTTAGAGCTTGGGTTAGCATACTCAAGAGGAGAGGTTCTAAGTGCCTAATACTTGGTTTATCTTGTTTTTCTTGATCATTTATATTTCAATATATTTCAGTTCTTGATTCCTGGTAGGTGGTACTGTAACAAAAGGTTGATAAATGGCATTCTCCTTTGTAGACAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATCACTGTCCCTTTGTTTTTCTGTCTTGGTATGTACACGGGTAATGGTTTTCTGGGAACTAGTCATTTTTCCAATCGTCTTTACAATTTATGATTTATGTTCCCTTTTCTAAAAGTTGCCGTCCTCTACTACACAGGTTCCTTTTGTTTATATTTTTCTTCCCTTTTGGAAACTTTTATGTTTTGTAGGTTTAACTCTTATTAAGTTTCTAACTTTCTTACGTATTTTTCCTTTTTGACCCTGTACCTCCAAATTCCTTGTGGTTCAAAGCTACTTTTCTACTCATTATTCATTTTCTCTAAACCATTTAACTGAAAATTTGAATTTGTTTTGAAACTACCATCCAATTTATTGCTAACAGATATCAGACACTTGTTTATTATAGATATCATCTAATCATATAAATGAATACAAAACGTGCATATTTTAGTTTCTGTTGTTAGGAATTCAAACATAGTCTCACTTTGGGTAGGGAAGGAAAAGATCCATGGTATATAAATGAGGACACTTATCTCCATTAGTATATGATGCTTTTTAGGTGAAGTCAAAAGCAAACCATGAGAGCTTATCTTCAAAAGAGTATCCGACCATCATAGAAATATCTTCAAAAAGAGTATCTTACCATCATAGAAATAATTTATCAAATAATTTAAAACTAATATAGGCTCTTTTACACAATTTGTAGGCTAAAGTGGAATATGAAAGTTTAGGAACCAAAGTGCAATCAATATGAAAGTTCAAGATCTTGATTGTTTTCTCATGCATTTTAGCATTTCACAAGAGACTAGACTCTAGGTACTTACTTTCTTGGTTGTCATATATTTAGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAGGTACCCATCTCCATAACATAAGAAGTATTTTGTGTTTTGCATGAAATGACTCTTTGGGTGGGGGCATGTACTGTTTAAGATAATTGTCTTGAACTTTGGCTGAACATGAAAAAGTGGATCCATTTCTTCTGTATCTACTGTTAACTAATATACTTTCATGTTCTTTGTACTTGTTTGTTTGTTTTTCTTGGAGGTTGGGTGGGGAGAAATTGTCTCTAGTATGTATATGTATATGTATATGTATTTTTTTCTATGGATGTAAGGACTTGATACTCTAATTTTTTAATCGAAAATATGTGTCTTAACCAATTGAGCTATGCTCAAGTTGGCGAGACTGAATTCATCATTGTTGGCGAGATCGGATTCATCGATCGGATTCATCATGATGAAAATTGTCTTTTAAGTTTGTGGATTTGATTTCATTGGTGTTATTAAAATGCATTGAAAAATCTTTCTATTTAACATTCACTTTATGGGTTGTGGGTTGAGAACACAAAACTAATTCAAAACTACTAATGATGGTTGAAAATATTTTCCATGATTAACATTTAAAGTTAACATAGTTTAGATTTTAGGTTTCACTACGTTTCTTCTAGTCATTTCAAACAAGAGATCAGATATTTGATTCTTCGTAAATGCAAAATATGTTTTTTTCTATCACTAACATTTTTAGACAAACTTCAAATTTTCAATTCATAAAATACGAGTTAAGAGTGGAGCATCCTCTTTTTTGAATGTAGAACAAGTTGTTGTGATTATCTTACCACTTCACAATTGGTGATTTGCTTGTTCACATACATATCCTTGGGAGAATGTGAGTAAATAGACAAGCTTTTTGTTCTGGTTAAAAGTAGTTTTAAAATGATAAAAATAAATAGTTTGTTGATTAAAAAAATATCTAAAATTTCAATGTTATGAAAGAAAAACGAGAACACATTAGAAAGAGAATGTGATGGATATATCCATCAACTAGCATTAACTTGTACTATCAATCTTAAAGCTTTGATATGTCCATGAATGAAAAGAAGTCACTTTTTTTTTTTTTTTATCTGTAGTGAGTTGGACTCCATTCTTGTAA

mRNA sequence

ATGGTTTTATCCTCTTCCTCTGCCCCGGCAACAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATCACTGTCCCTTTGTTTTTCTGTCTTGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTTTCACTACGTTTCTTCTAGTCATTTCAAACAAGAGATCAGATATTTGATTCTTCTGAGTTGGACTCCATTCTTGTAA

Coding sequence (CDS)

ATGGTTTTATCCTCTTCCTCTGCCCCGGCAACAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATCACTGTCCCTTTGTTTTTCTGTCTTGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTTTCACTACGTTTCTTCTAGTCATTTCAAACAAGAGATCAGATATTTGATTCTTCTGAGTTGGACTCCATTCTTGTAA

Protein sequence

MVLSSSSAPATIGCVNNNFKAKFPKKDFNLPKHLAKSLSLCFSVLVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQFHYVSSSHFKQEIRYLILLSWTPFL
Homology
[Close]
BLAST of CaUC11G213980 vs. NCBI nr
Match: KAA0045925.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 3.6e-69
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 0 

Query: 45  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 104
           +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD
Sbjct: 1   MVSDMDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 60

Query: 105 RAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIEL 164
           +AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61  QAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIEL 120

Query: 165 QHGSGAAASASAHSHPSAPFDARFTEDATQ 195
           QHGSGAAASASAHSH SAPFDARFTEDATQ
Sbjct: 121 QHGSGAAASASAHSHQSAPFDARFTEDATQ 150

[Close]
BLAST of CaUC11G213980 vs. NCBI nr
Match: TYK13665.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 1.0e-68
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0 

Query: 45  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 104
           +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD
Sbjct: 1   MVSDMDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 60

Query: 105 RAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIEL 164
           +AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61  QAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIEL 120

Query: 165 QHGSGAAASASAHSHPSAPFDARFTEDATQ 195
           QHGSGAAASASAHSH SAPFDARFTED TQ
Sbjct: 121 QHGSGAAASASAHSHQSAPFDARFTEDTTQ 150

[Close]
BLAST of CaUC11G213980 vs. NCBI nr
Match: XP_038902813.1 (mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_038902814.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida])

HSP 1 Score: 269.6 bits (688), Expect = 2.3e-68
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 49  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEE 108
           MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 109 FVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGS 168
           FVESVKQRIGSECLVDEATGSLAGKSGQA TTG+PPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGIPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 169 GAAASASAHSHPSAPFDARFTEDATQ 195
           GAAASASAHSH SAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of CaUC11G213980 vs. NCBI nr
Match: XP_022986620.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 267.3 bits (682), Expect = 1.2e-67
Identity = 144/152 (94.74%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 46  VLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDR 105
           V DMD LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+
Sbjct: 21  VSDMDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQ 80

Query: 106 AEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVRLEQMSKAVRWLVIE 165
           AEEFVESVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLPPISA+RLEQMSKAVRWLVIE
Sbjct: 81  AEEFVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIE 140

Query: 166 LQHGSG-AAASASAHSHPSAPFDARFTEDATQ 195
           LQHGSG AAASASAHSHPSAPFDARFTEDATQ
Sbjct: 141 LQHGSGAAAASASAHSHPSAPFDARFTEDATQ 172

[Close]
BLAST of CaUC11G213980 vs. NCBI nr
Match: XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-67
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0 

Query: 49  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEE 108
           MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 109 FVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGS 168
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 169 GAAASASAHSHPSAPFDARFTEDATQ 195
           GAAASASAHSH SAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]
BLAST of CaUC11G213980 vs. ExPASy Swiss-Prot
Match: Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.9e-45
Identity = 103/153 (67.32%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 49  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEE 108
           MD +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 109 FVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLV 168
           FVESVKQRIGSECLVDEATG   + AG    A  TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 169 IELQHGSGAAASASAHSHPSAPFDARFTEDATQ 195
           +ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]
BLAST of CaUC11G213980 vs. ExPASy TrEMBL
Match: A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.7e-69
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 0 

Query: 45  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 104
           +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD
Sbjct: 1   MVSDMDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 60

Query: 105 RAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIEL 164
           +AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61  QAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIEL 120

Query: 165 QHGSGAAASASAHSHPSAPFDARFTEDATQ 195
           QHGSGAAASASAHSH SAPFDARFTEDATQ
Sbjct: 121 QHGSGAAASASAHSHQSAPFDARFTEDATQ 150

[Close]
BLAST of CaUC11G213980 vs. ExPASy TrEMBL
Match: A0A5D3CQ46 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001830 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 5.1e-69
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0 

Query: 45  LVLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 104
           +V DMD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD
Sbjct: 1   MVSDMDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD 60

Query: 105 RAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIEL 164
           +AEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61  QAEEFVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIEL 120

Query: 165 QHGSGAAASASAHSHPSAPFDARFTEDATQ 195
           QHGSGAAASASAHSH SAPFDARFTED TQ
Sbjct: 121 QHGSGAAASASAHSHQSAPFDARFTEDTTQ 150

[Close]
BLAST of CaUC11G213980 vs. ExPASy TrEMBL
Match: A0A6J1JEJ1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 5.6e-68
Identity = 144/152 (94.74%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 46  VLDMDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDR 105
           V DMD LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+
Sbjct: 21  VSDMDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQ 80

Query: 106 AEEFVESVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVRLEQMSKAVRWLVIE 165
           AEEFVESVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLPPISA+RLEQMSKAVRWLVIE
Sbjct: 81  AEEFVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIE 140

Query: 166 LQHGSG-AAASASAHSHPSAPFDARFTEDATQ 195
           LQHGSG AAASASAHSHPSAPFDARFTEDATQ
Sbjct: 141 LQHGSGAAAASASAHSHPSAPFDARFTEDATQ 172

[Close]
BLAST of CaUC11G213980 vs. ExPASy TrEMBL
Match: A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.3e-68
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0 

Query: 49  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEE 108
           MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 109 FVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGS 168
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 169 GAAASASAHSHPSAPFDARFTEDATQ 195
           GAAASASAHSH SAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of CaUC11G213980 vs. ExPASy TrEMBL
Match: A0A1S3C6T6 (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.3e-68
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0 

Query: 49  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEE 108
           MD LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 109 FVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGS 168
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 169 GAAASASAHSHPSAPFDARFTEDATQ 195
           GAAASASAHSH SAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]
BLAST of CaUC11G213980 vs. TAIR 10
Match: AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 182.6 bits (462), Expect = 3.5e-46
Identity = 103/153 (67.32%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 49  MDRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEE 108
           MD +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 109 FVESVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLV 168
           FVESVKQRIGSECLVDEATG   + AG    A  TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 169 IELQHGSGAAASASAHSHPSAPFDARFTEDATQ 195
           +ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

The following BLAST results are available for this feature:
BLAST of CaUC11G213980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045925.13.6e-6995.33mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... [more]
TYK13665.11.0e-6894.67mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... [more]
XP_038902813.12.3e-6896.58mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_0... [more]
XP_022986620.11.2e-6794.74mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbit... [more]
XP_008457936.11.5e-6795.89PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo][more]
BLAST of CaUC11G213980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84VW54.9e-4567.32Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O... [more]
BLAST of CaUC11G213980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TWZ71.7e-6995.33Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... [more]
A0A5D3CQ465.1e-6994.67Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... [more]
A0A6J1JEJ15.6e-6894.74mediator of RNA polymerase II transcription subunit 32-like isoform X1 OS=Cucurb... [more]
A0A0A0LIN77.3e-6895.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1[more]
A0A1S3C6T67.3e-6895.89mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G... [more]
BLAST of CaUC11G213980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11760.13.5e-4667.32MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033244Mediator of RNA polymerase II transcription subunit 32PANTHERPTHR35989MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32coord: 49..194
NoneNo IPR availablePANTHERPTHR35989:SF1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32coord: 49..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G213980.1CaUC11G213980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009631 cold acclimation
biological_process GO:0010150 leaf senescence
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048364 root development
cellular_component GO:0016592 mediator complex