CaUC11G212120 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G212120
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr11: 24949392 .. 24956403 (+)
RNA-Seq Expression	CaUC11G212120
Synteny	CaUC11G212120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAACCTATCCAATTTGAAATAGACGTACTCATACATTCAACAGACAATGTTTACATCCAACATTTACAACTCACTACACATAGCTACAAACTCTTAATTTATCCCACACTAGTATGTACAAGTTTCACTCCTTTCAAACATACAAAAGTTTACTAAATAAGTCAGAAGCTTGCATAAAAAACATATGAGATTGGATAGGCTAAGCACCATGAACACGTTCACTATTTGGGAGACAAAAAACACAAAAAAAGGGTGAGCTGGGAAGCCTAGTGAGTGGCAGTATAAAAATAATTTTTGACTAATAAATCTTAATCACATAAAATAGTTGTCAGAAATTAAAGAAACATAGCATGCTTAGTTAACATTAAAACATAAAGAACTTGTACCTTAAATCCTTAGTTGAGGTAGAGCAGGCTTAATACTCTCAACGTCGAAAACATTCCTTAGTTGATGTAGAGTAATCTCAACACAATCAGCGTCCATAACTCTCCTATGTGCACATAGACATGTCCTCAAAGGGCTAACACCCTGACACATGACCCTAAGCCCTTGTGTGTGCCAAAGTGGGTCCCAAAGACCTTACATATTAGGCTACTTAAATACCATTTCCTTGAGCTTCAATATTAGGTCCCCTTCTTTGTTAATACCAGGGTACATTTACATAGTTGAAACAAACTTTATATAAGATTCAATACAATATTGAACATGGGAAAAAATTTCTCAAACATTACTTAATTTTATCAGATTAAGCAAGCTCAACATAGCTTTTAAAGAAATCATAGAAACATGCTTCGTATAGTAAATCATTAACTTCATGAGAAACGAGTAATAACATTAACCATTCAAAACTTAAAAAAAAAAACGTTTGTCACTCACTCCTATTAATTGGGTCCCAACGGATTGTAAGCTTCCCGCACCTCTGTTTTGTTATGACATAATAAAATCTGTTGTTCCTATTAACTATTATTTCACTTACTGTTGCTCATATTTATTTGTTGCAAGTTTCCACTTCATTTATTGTGTATTAGGTAGCAATATCTAAAGATACCTAATCCTATCATTAGCCTAGATTTATTTGTTGAACCGGGGTTTGAAACCAAACTTCTCCTCAAGAGGATAGATGGGGCGATTCAGGTGAGATCTAATGTAGATCCAACTTTCTATTCACTCGTGGAATCCGGGCGGTCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTTCCGCAGGGACCAGGAGATTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACNTCAAAAAAAAACTGTCCAAGGCTAATTCTTTTAGGTCTTTCTTCACAATAATTATGGGGATAATTATGGGAAGGTTCTTGGGCATTGTAATTTGTAAGTAAGAAATTAATTCAGCAGTTCATTTACTGCATTAAGCCTCTTCAATTCTCTTCCTCTCGGTTCTCTACTGTCTCTGTTAAAAATCTAATTTGGTAGCAGAGCTTTCGCTATGGCTGAAAGCCTCTTTAATCCTTGACAAACTACCAACAACACAGAAGGTGAAGTAACAGAGATGGCCACTCTTTCCTCAGCTCAAAGAAACTCCTCTACCAGCAGCGACTCGGCTCCAGTAATTCAAAAATATCAGGTAAGGTTTGGTACCTGCCCAATGGGCAACCTCTCCTTCTCTAATCTACTGAATCAAGTGACCTCTATCAAATTTGATAGAGGCAACTTCCTGCTCTGGCAGAACATTGTTCTTCCTATTCTAAGGAGCTACAAGCTGGAAGGTCATCTTACTAGAAAAACACTAGCACTGGAGCACTCTATCATCATCCCACCAAGTGAAAAAGAACCTCAAGGACTTGTTCTTCCTAATCCCGAGCACGATATTTGGCTGGCAGCTAATCAACTTCTAGTCAGCTGGTTGTACAACTCAATGACTCCTGAAGTAGCAGCTCACGTAATGGGTTACGATGAAGCCAAACTTTTGTGGGATGCCATTCAAGAATAATTTGGGATTCAGTCACGATCTCAAGAAGACTACTATCGACAAATGATGCAACAAACGAGAAAAGGAAGCATGAAGATGGAGGAATACCTAGCTGTGATGAAAAAGTATTACGGCAACCTACTGTTAGCTGGATCACCAATGGAGTTCATGAGCTTCACCTCTCATGTATTCGTTGGACTCGACGAAGAATACAATCCCATTTTGTGTGTGATTCCAAGCCAAGATCTCACGTGGAACAAAATTCAATATGAACTCCTTTCCTGTGAATAGAGACATAAGAAGCTTCAAGAACTAAAAGGAAGTTTAAACTTACACCAACCTTCTGCCAACATTGTTTCTGAAGATAAGAGAAAGAGTCACAATTGGCCAGAGTCCAATAGAAGCAACAATCAAAATATAGGACACAGTAGAGGAAGAGGAAGAAACCGTTACTTACCATACCCACCGTCCAACAAGCCAACTTGTCAAATATGTGGAAAATATGGACATGCTGCTGATGTATGTTACTCACGTTATGACAAAAATGATGAAGCCAATGCCACCTCTTCAGATAAGAAGAAAAACAACTCCCCAACAGCTCTTATGGCATATCCAGAAACCGTTGATGACTCTACCTGGTATTTGGACAGCTGAGCAACAAACCACATCACCACCAATTTACAACGACTATCTTTGAAGGGTACGTATCCAAATTCCACTACTATTATTGTTGGTGATGGAACTAAAGTTCCGATCGTTACTTATGGAAATGCTAAATTATTTTGCACAACACTACCCATAAACTTGAAAGATGTTCTCTATGTTCCTCGCATGAAAAAGAACCTCATTAGCATTTCAAAGCTCACTCAAGATAATGAAGTAACTGTGGAATTTGACAATAACTTCTATTTAATAAAGGAAAATAAGTCCAAGGAAACGTGCTTGATCGAGAAGCTTGAACGTGGACTTTATCGTTTGGAAGCAACTCTAAACAAAGCCTCTTTTAGTGAAGACAATAAGGATGCTGCTCGGGTAGTCTTTCTCGGAGAAGCTACCAACACTCATCCTCAAACTTTTGAAGACTTGGCTACTGAAAAATCCTCTAATTTTTGTACTAAGGATCTGTGGCACCAGAGATTGGGTCACCCTTCCTCTAGAATTATAAATTAAGTCTTACAATCTTGTAATATCCCTATTAACAGCAATGACAAGGATGATTTTTGTGAGGCTTGTAAATTTGGAAAGGTGTGTCGACAATCACTTCAAAGATCTCACTCTCGAGCCAACAAGAAACTTGATCTTATACACATTGATTTGTGGGGACTAGCCTCTATTCTATCTACCAGTGGGTGCCGGTACTATGTAGCATTTGTGGATGATTACAGTTGATTTATTTGGATTTATCCACTTCGAGCTAAAGGAGATACAGCCACGGTGTTCAAACAGTTTAAAAGCCTTATCGAGAACTTATATTCATCAAAAATTAAAACTCTAAGGTGTGATGGAGGTGGAGAATTTAAACCAATCACTGAATTTGCACACCAACAGGGAATTGAAGTTCAAATAACATGCCCTTATACTTCTCCTCAAAATGGTCGAGTGGAACGTAAACATCGTCACATTGTTGAAATCGGCCTCACACTCCTTGCTCAAGCAAAAATGCCATTAAATCTTCGGTGCGAGGCCTTTCATACAGCTGCATACCTTATAAACAGAATGCCCTCGAGTGTCATCAACAATGCATGTCCATTTGATATTCTTAAGGGACATTCTCCTTATTATACATGGCTTAGGACCTTTGGATTTGCTTGTTTTCCCTATCTACGATTGTACAAACAACACAAATTTGACTCTATACCACAAAATGTGTGTTCATTGGGTATAGTCACTGTCACAAGGGGTCCCAGTGCCTATCTCCAACAGGGAAAGTATTCACTTCATGACATGTCTATTTCAATGAAAAAGGAATTTCCATACTCATCCATCTTCAAGAAATCAAAGAATATCACAAACTCCAACTTAGTCATTTCTTGGATACCAATTTGAAACATAACAACACCGTTCCATCATCCTTGCAATCCACCAGTCAATATAGACAACTATTGTGATCAAACCAGACCATCAACCGAATCACCTACAACGCAGCCTAACTCTCCAAGTTCCCCCACCTCTCCCAATACATCTACTTCAACATCCCCCGATCCACCATCCTCCACATTTCCCACCACCATTTCAACAACCATTAATACCCATCCCATGACCACTCGGGCTAAGGCAGGAATTTTCAAACCAAAACAGCCGTATGGCTACTTGGCACAACTACAAACATAGCAAGACTGATCCCAATTAGAACCAAATCTTTTTAAGGAAGTCATTTCTTCTAAACAATGGAGACAGGCCATGGATCATGAATTCCATGCTCTCACAACAAACCATACATGGGACTTGGTCCCTCCTAACCCCAATCAACACATTGTTCCTACTAAGTGAGTGTACAAGATCAAGAGAGACTCTGCTGATCACATTCAATGGTATAAAGCACGACTGGTGGCTAAAGGCTACCTTCAAACTCCCGGCATTGACTATGGAGAAACTTATAGTCCAGTCATTAAACCTACCTCTATACAGGTTTTTCTTACCCTTACACTCACACATCGTTGGTCCATTCGACAGCTTGATGTAAGCAACACTTTTCTTCATGGAACGCTCAAGGAAGAAGTCTACATCTCACAACCCCAAGGCTATGTTCATCCCAAGTTCCCTCATCACGTATGTCGACTCCATAAGGCCCTCTATGGTCTTAAGCAAGCACCCCAGGCATGGTATGAAGAACTTCGCACTTTCCTTTTGCGTTGTAACTTCACTTAGTCCAAGGTTGATCTGTCTCTATTTATCTTTAAATCTCCAAAGGGCACCATTCTACTACTTGTTTATGTAGATGATAACCTCACCAGTTCATCCACATCTCTACTCAACTCCTTTGTTTCCAAACTCCAAGCCACCTTTGCTGTCAAAGATCTTGGTCTACTCCACTATTTTCTTGGCATTCAAGCTACTTTCATCGACCATGGTCTTCTTCTTTCCCAAACCAAATACATACAAGATCTGCTCCTTCCACTCAATCTACAACACATCAAACCAACACCAACCCTGATGATCACTGGCAAACAACTGTCTCAATTTGATGGTGATCCCATGCATGATCCTCAAATCTATCGCAGCGCCATCGGTTCTCTTCAATACCTTCAACACACTCGACCAGACATTGCATTCGCCGTCAATAAACTCAGTCAATTCAATCAACAACCAAATTTTCTTCACTGGCGTGCTCTTAAACGACTTCTATGCTATCTCCAGGGAACAAGTAATCTTGGTTTGTTTTTATCTCCTGCACCGACATTTTCCCTCACTGGATATTCTGATGCCGATTGGGCGTCATCTCCTGATGACCGAAAATTTGTCAATGGTTATTGTATCTTTCTTGGTAACTCTCTTATCTCATGGAGCTCCAAGAAACAACAAGTGGTGGCTCAATCAAGTACAGAATCGGAATATCGTGCTCTATCTCTTACGGCTTGCAAAATGCTATGGCTTCGACAGTTACTTTAAGACATTGGCATTCCCATCACCTTCACTCCTCTCCTTTGGTGTGACAACCTCTCTGCAGCTGCTCTAGCACACAATCCTGTTTTTCATGCTCGAACTAAACACAAAGATATTGATGCTCATTTCATTCGTGATCAAGTTATTTCCAAGCAGCTTGAAATTTGTCACATTCGCTCTCAAGAACAGCTAGCTGACACTTTGACCAAATCGTTATCCTCACAGATGTTCCAGACTCTAAGAAACAAACTCGGACTCTGGTGTCACCCTACGTCTCGTTTGCAGGGGGATGTTATGACATAATAAAATCTGCTGTTACTATTAACTATTATTTCACTTACTGTTGCTCATATTTATTTGTTGCAAGTTTCCACTTCATTTATTGTGTATCAGGTAGCAATATCTAAAGATACCTAATCCCATCATTAGCCTAGATTTATCTTATTCAATGTGTATTTATAGGAAGGTTCTTGGGCATTGTAATTTGTAAGTAAGAAATTAATCAGCGGTTCATTTACTGCATTAAGCCTCTCCAGTTCCCTTCCTCTCGGTTCTCTTCATCTACTGTCTCTATTAAAAATCTAACTTGTTTGTCCTGAAAATAAGTTTACTTCCTTTGATTAGACTCTTTTAAATCTCCCTAAACCTTAACTTAAACCATCCTTGTCTTTAGGTTAAATTAATACTTGAATCAACCCATCAATGCATAATACAGTGGCTAATACCTTAAGTGAAATGAAATGGAGTTAGGCATGTAACCTTGTTGGATGTGGGCACAAGTACTCAAACATACTCGCTGGATGCAGGCACAAACGCACGCACACATAGCCTTGGCTGCCCCCTCACACAGGCACTCGCTCACACAGGCACTCGCTTACACAAACGCACAGGCATAGGTGTGCTCACTAGGCATCAATTAGCCACACGTGCAATGCTTTAA

mRNA sequence

ATGACACAACCTATCCAATTTGAAATAGACGTGAGATCTAATGTAGATCCAACTTTCTATTCACTCGTGGAATCCGGGCGGTCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGGACCAGGAGATTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGAAGGTTCTTGGGCATTGTAATTTGCACAAACGCACGCACACATAGCCTTGGCTGCCCCCTCACACAGGCACTCGCTCACACAGGCACTCGCTTACACAAACGCACAGGCATAGGTGTGCTCACTAGGCATCAATTAGCCACACGTGCAATGCTTTAA

Coding sequence (CDS)

ATGACACAACCTATCCAATTTGAAATAGACGTGAGATCTAATGTAGATCCAACTTTCTATTCACTCGTGGAATCCGGGCGGTCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGGACCAGGAGATTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGA

Protein sequence

MTQPIQFEIDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAMVRKKGGTSTLGERSTTES

Homology

[Close]

BLAST of CaUC11G212120 vs. NCBI nr
Match: QCD89328.1 (large subunit ribosomal protein L2 [Vigna unguiculata])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 76/112 (67.86%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQ------------- 68
           I VRSNVDPTF SLV SGRSGGTT+APLFSRIHTSLISIWT ISRAQ             
Sbjct: 156 IQVRSNVDPTFSSLVGSGRSGGTTTAPLFSRIHTSLISIWTVISRAQSLRTPPISAMRCV 215

Query: 69  ----------GPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAMVRKKG 98
                     G G LKKDLRVS+V PGG LNAF FLLIGVISQ LAMV+KKG
Sbjct: 216 YLSISLLTRKGAG-LKKDLRVSKVVPGGSLNAFLFLLIGVISQILAMVKKKG 266

[Close]

BLAST of CaUC11G212120 vs. NCBI nr
Match: KAA0050839.1 (putative chloroplast RF68 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-20
Identity = 73/140 (52.14%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSG--------------------------------------G 68
           I VRSNVDPTFYSLV SGRSG                                       
Sbjct: 62  IQVRSNVDPTFYSLVGSGRSGRDHLGSSLLENPYIPYQYMDSYLSSIGLGRPQWENKIEH 121

Query: 69  TTSAPLFSRIHTSLISIWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRL 111
            T+     R   S IS W       GP DLKKDLRVS+VGPGGFLNAFFFLLIGVISQ L
Sbjct: 122 LTTYLHRPRTTRSPISFWG--DGGIGPEDLKKDLRVSKVGPGGFLNAFFFLLIGVISQTL 181

[Close]

BLAST of CaUC11G212120 vs. NCBI nr
Match: KAF4361766.1 (hypothetical protein G4B88_012074 [Cannabis sativa] >KAF4394095.1 hypothetical protein F8388_017908 [Cannabis sativa])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 70/138 (50.72%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 11  VRSNVDPTFYSLVESGRSG---------------------GTTSAPLFSRIHTSLIS--- 70
           VRSNVDPTFYSLV SGRSG                     G++       I+ SL+    
Sbjct: 32  VRSNVDPTFYSLVGSGRSGRDHHDSSLLENPYIPYQDQEIGSSRKKNAWLINNSLLGLRP 91

Query: 71  --------------IWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAM 111
                         ++ +IS  +    LKKDLRVSRVGPGG LN FFFLLIGVISQ+LAM
Sbjct: 92  PQSLRAPPISAMGCVYLSISSLELGAGLKKDLRVSRVGPGGSLNTFFFLLIGVISQKLAM 151

[Close]

BLAST of CaUC11G212120 vs. NCBI nr
Match: TYK08512.1 (putative chloroplast RF68 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 7.7e-20
Identity = 72/140 (51.43%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSG---------------------------------GTTSAP 68
           I VRSNVDPTFYSLV S RSG                                    +  
Sbjct: 57  IQVRSNVDPTFYSLVGSERSGRDHLGSSLLENPYIPYQYMDSYLSSIGLGRPQWENKTEH 116

Query: 69  LFSRIH-----TSLISIWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRL 111
           L + +H      S IS W       GP DLKKDLRVS+VGPGGFLNAFFFLLIGVISQ+L
Sbjct: 117 LTTYLHRPRTTRSPISFWG--DGGIGPEDLKKDLRVSKVGPGGFLNAFFFLLIGVISQKL 176

[Close]

BLAST of CaUC11G212120 vs. NCBI nr
Match: KZV53052.1 (hypothetical protein F511_23525 [Dorcoceras hygrometricum])

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 71/134 (52.99%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSGGT--------------------TSAPLFSRIHTSLISIW 68
           I VRSNVDPTF SLV SGRSGG                      S+    +   + IS+ 
Sbjct: 88  IRVRSNVDPTFDSLVGSGRSGGDHHGSSLLENPYIPYQCMNSYLSSTGLEKAAINRISLI 147

Query: 69  TAISRAQ-------------GPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAMVRK 110
               +A+             G   LKKDLRVSRVGPGG LNAFFFLLIGVISQ LA VRK
Sbjct: 148 LPSRKAEREILFPFRRDQEIGSSRLKKDLRVSRVGPGGSLNAFFFLLIGVISQILAGVRK 207

[Close]

BLAST of CaUC11G212120 vs. ExPASy Swiss-Prot
Match: Q6ENB7 (Uncharacterized protein ycf68 OS=Oryza nivara OX=4536 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 9  IDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQ 56
          I VRS+VD TFYSLV SGRSGG T+APLFSRIHTSLIS+W AISRAQ
Sbjct: 25 IQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQ 71

[Close]

BLAST of CaUC11G212120 vs. ExPASy Swiss-Prot
Match: P0C304 (Uncharacterized protein ycf68 OS=Oryza sativa OX=4530 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 9  IDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQ 56
          I VRS+VD TFYSLV SGRSGG T+APLFSRIHTSLIS+W AISRAQ
Sbjct: 25 IQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQ 71

[Close]

BLAST of CaUC11G212120 vs. ExPASy Swiss-Prot
Match: P0C305 (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica OX=39946 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 9  IDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQ 56
          I VRS+VD TFYSLV SGRSGG T+APLFSRIHTSLIS+W AISRAQ
Sbjct: 25 IQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQ 71

[Close]

BLAST of CaUC11G212120 vs. ExPASy Swiss-Prot
Match: P12173 (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica OX=39947 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 9  IDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQ 56
          I VRS+VD TFYSLV SGRSGG T+APLFSRIHTSLIS+W AISRAQ
Sbjct: 25 IQVRSHVDLTFYSLVGSGRSGGGTTAPLFSRIHTSLISVWRAISRAQ 71

[Close]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL
Match: A0A4D6LLJ5 (Uncharacterized protein ycf68 OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g272 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.1e-27
Identity = 76/112 (67.86%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSGGTTSAPLFSRIHTSLISIWTAISRAQ------------- 68
           I VRSNVDPTF SLV SGRSGGTT+APLFSRIHTSLISIWT ISRAQ             
Sbjct: 156 IQVRSNVDPTFSSLVGSGRSGGTTTAPLFSRIHTSLISIWTVISRAQSLRTPPISAMRCV 215

Query: 69  ----------GPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAMVRKKG 98
                     G G LKKDLRVS+V PGG LNAF FLLIGVISQ LAMV+KKG
Sbjct: 216 YLSISLLTRKGAG-LKKDLRVSKVVPGGSLNAFLFLLIGVISQILAMVKKKG 266

[Close]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL
Match: A0A5A7UBD6 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001070 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 73/140 (52.14%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSG--------------------------------------G 68
           I VRSNVDPTFYSLV SGRSG                                       
Sbjct: 62  IQVRSNVDPTFYSLVGSGRSGRDHLGSSLLENPYIPYQYMDSYLSSIGLGRPQWENKIEH 121

Query: 69  TTSAPLFSRIHTSLISIWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRL 111
            T+     R   S IS W       GP DLKKDLRVS+VGPGGFLNAFFFLLIGVISQ L
Sbjct: 122 LTTYLHRPRTTRSPISFWG--DGGIGPEDLKKDLRVSKVGPGGFLNAFFFLLIGVISQTL 181

[Close]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL
Match: A0A7J6ETX5 (Uncharacterized protein ycf68 OS=Cannabis sativa OX=3483 GN=F8388_017908 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 70/138 (50.72%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 11  VRSNVDPTFYSLVESGRSG---------------------GTTSAPLFSRIHTSLIS--- 70
           VRSNVDPTFYSLV SGRSG                     G++       I+ SL+    
Sbjct: 32  VRSNVDPTFYSLVGSGRSGRDHHDSSLLENPYIPYQDQEIGSSRKKNAWLINNSLLGLRP 91

Query: 71  --------------IWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAM 111
                         ++ +IS  +    LKKDLRVSRVGPGG LN FFFLLIGVISQ+LAM
Sbjct: 92  PQSLRAPPISAMGCVYLSISSLELGAGLKKDLRVSRVGPGGSLNTFFFLLIGVISQKLAM 151

[Close]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL
Match: A0A5D3CB41 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00410 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 72/140 (51.43%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSG---------------------------------GTTSAP 68
           I VRSNVDPTFYSLV S RSG                                    +  
Sbjct: 57  IQVRSNVDPTFYSLVGSERSGRDHLGSSLLENPYIPYQYMDSYLSSIGLGRPQWENKTEH 116

Query: 69  LFSRIH-----TSLISIWTAISRAQGPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRL 111
           L + +H      S IS W       GP DLKKDLRVS+VGPGGFLNAFFFLLIGVISQ+L
Sbjct: 117 LTTYLHRPRTTRSPISFWG--DGGIGPEDLKKDLRVSKVGPGGFLNAFFFLLIGVISQKL 176

[Close]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL
Match: A0A2Z7D0R2 (Uncharacterized protein ycf68 OS=Dorcoceras hygrometricum OX=472368 GN=F511_23525 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 71/134 (52.99%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 9   IDVRSNVDPTFYSLVESGRSGGT--------------------TSAPLFSRIHTSLISIW 68
           I VRSNVDPTF SLV SGRSGG                      S+    +   + IS+ 
Sbjct: 88  IRVRSNVDPTFDSLVGSGRSGGDHHGSSLLENPYIPYQCMNSYLSSTGLEKAAINRISLI 147

Query: 69  TAISRAQ-------------GPGDLKKDLRVSRVGPGGFLNAFFFLLIGVISQRLAMVRK 110
               +A+             G   LKKDLRVSRVGPGG LNAFFFLLIGVISQ LA VRK
Sbjct: 148 LPSRKAEREILFPFRRDQEIGSSRLKKDLRVSRVGPGGSLNAFFFLLIGVISQILAGVRK 207

The following BLAST results are available for this feature:

BLAST of CaUC11G212120 vs. NCBI nr


Match Name	E-value	Identity	Description
QCD89328.1	1.9e-26	67.86	large subunit ribosomal protein L2 [Vigna unguiculata]	[more]
KAA0050839.1	3.4e-20	52.14	putative chloroplast RF68 [Cucumis melo var. makuwa]	[more]
KAF4361766.1	5.9e-20	50.72	hypothetical protein G4B88_012074 [Cannabis sativa] >KAF4394095.1 hypothetical p...	[more]
TYK08512.1	7.7e-20	51.43	putative chloroplast RF68 [Cucumis melo var. makuwa]	[more]
KZV53052.1	2.2e-19	52.99	hypothetical protein F511_23525 [Dorcoceras hygrometricum]	[more]

BLAST of CaUC11G212120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ENB7	6.5e-14	82.98	Uncharacterized protein ycf68 OS=Oryza nivara OX=4536 GN=ycf68-1 PE=3 SV=1	[more]
P0C304	6.5e-14	82.98	Uncharacterized protein ycf68 OS=Oryza sativa OX=4530 GN=ycf68-1 PE=3 SV=1	[more]
P0C305	6.5e-14	82.98	Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica OX=39946 GN=ycf68-1 ...	[more]
P12173	6.5e-14	82.98	Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica OX=39947 GN=ycf68-...	[more]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6LLJ5	9.1e-27	67.86	Uncharacterized protein ycf68 OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g272 PE=3...	[more]
A0A5A7UBD6	1.7e-20	52.14	Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A7J6ETX5	2.8e-20	50.72	Uncharacterized protein ycf68 OS=Cannabis sativa OX=3483 GN=F8388_017908 PE=3 SV...	[more]
A0A5D3CB41	3.7e-20	51.43	Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A2Z7D0R2	1.1e-19	52.99	Uncharacterized protein ycf68 OS=Dorcoceras hygrometricum OX=472368 GN=F511_2352...	[more]

BLAST of CaUC11G212120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022546	Uncharacterised protein family Ycf68	PFAM	PF10839	DUF2647	coord: 8..55 e-value: 3.0E-20 score: 72.0
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 5..55
None	No IPR available	PANTHER	PTHR34890:SF5	SUBFAMILY NOT NAMED	coord: 5..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G212120.1	CaUC11G212120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome