CaUC11G212010 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G212010
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	zf-RVT domain-containing protein
Location	Ciama_Chr11: 24784175 .. 24785388 (-)
RNA-Seq Expression	CaUC11G212010
Synteny	CaUC11G212010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAAAAGCGGAGTGGGGGTCACCGACAGTAATAGAATACGGGAGCAACGGGCAGCGTTCAGCGCAGAAGAGAGTGAGAGAAGAAAGAAGAAAGTGGTAGATGCGCGCGGCGTGCGGCTATGTCAGAGAGGATGTGCCGGCGGAGAGGGGTCGCAGTTGGAAGATAAGGGAGGAAAAGTGGAATGGCTGCTAAAGCCTAACGATGCGGGCAGTACTGCGGTGAGAGGGGAAAGAAAGAAAAGGGTGGGGAAAGTGAAGATCGGATCGGGATCGTGGGTGATACGAACACGGTTAAATTGCAAATTTAATCTCAATAGATTAGAAAATTTTAAAATATAGTCCTTATAATTTATAATTAGAACTCTTATAATTTAATATTTTTCTCCTCTATTTATTGAAGTCATCCATGAGCCACAACCCTTCTTTTGTTTGAAGAGCATTATGGGTCGTAGCTTGTTTCAAAGGGAATTAGAAGATGGATGAATACGATTAAGGACACCTTGTTTTTTCTTCCTGAGTGGCTTCTGAGGGAATGGCCTTTCAAACTAGTCACCCTTTTCCTCAGGAGGTTGAGCCTTTACATGTGAGTGATCACATCATGGAAGAGGGAGCTTGGAATAAGCCTAAGATGGAGAGGGTCTTGTGGGAGGAGGATAGACGAATTATTCAATCAATTCCTATTATACAAACTCTAGTTCCTAATTCTTGGTGTTGGCAATATTCAAGGATTGGCTCTTTCACCACAAAAACTGCTTACAAACTCTACATTTTTGCTAATTTGGAGGCTTTCTCCTCTTCTTTGGGTATGCATGAGGTTTGGTGAAAACAGGTGTGGGGCTCTTCTCTTCCATTGAAGATCAAAATTTTCTTTGACGTGTTTATAATCATATTCTACCTACATCCCAAAATCTTGTTTATAGAAAATTGTCTCTCATGGTGAATGAATGTGTTGTGCTAAGGAAGTAGAATCTGAAACCCATGCTTTATTTCTATGTAAAAGGGTTAGGAATGTTTTGATCGGGACCTTCCCTTCCATTATGGAGTTGGTAGATCTTCATTTATCTTTGCATGATATGTTGTCCCTTGTTGCTGACAAGCTCAATACTAATGGTTGCTTACTTTTTGGTGTCTCTTGTTGGGCGATTTGGGAGGACAGAAACCAGATGCTTCATAGAATTAAGGTCGATTGCCCCTTTGCATTCCAAGTTTGA

mRNA sequence

ATGCGAAAAAGCGGAGTGGGGGTCACCGACAGTAATAGAATACGGGAGCAACGGGCAGCGTTCAGCGCAGAAGAGAGTGAGAGAAGAAAGAAGAAAGTGGTAGATGCGCGCGGCGTGCGGCTATGTCAGAGAGGATGTGCCGGCGGAGAGGGGTCGCAGTTGGAAGATAAGGGAGGAAAAGTGGAATGGCTGCTAAAGCCTAACGATGCGGGCAGTACTGCGGAGGTTGAGCCTTTACATGTGAGTGATCACATCATGGAAGAGGGAGCTTGGAATAAGCCTAAGATGGAGAGGGTCTTGTGGGAGGAGGATAGACGAATTATTCAATCAATTCCTATTATACAAACTCTAGTTCCTAATTCTTGGTGTTGGCAATATTCAAGGATTGGCTCTTTCACCACAAAAACTGCTTACAAACTCTACATTTTTGCTAATTTGGAGGCTTTCTCCTCTTCTTTGGGTATGCATGAGGAAGTAGAATCTGAAACCCATGCTTTATTTCTATGTAAAAGGGTTAGGAATGTTTTGATCGGGACCTTCCCTTCCATTATGGAGTTGGTAGATCTTCATTTATCTTTGCATGATATGTTGTCCCTTGTTGCTGACAAGCTCAATACTAATGGTTGCTTACTTTTTGGTGTCTCTTGTTGGGCGATTTGGGAGGACAGAAACCAGATGCTTCATAGAATTAAGGTCGATTGCCCCTTTGCATTCCAAGTTTGA

Coding sequence (CDS)

ATGCGAAAAAGCGGAGTGGGGGTCACCGACAGTAATAGAATACGGGAGCAACGGGCAGCGTTCAGCGCAGAAGAGAGTGAGAGAAGAAAGAAGAAAGTGGTAGATGCGCGCGGCGTGCGGCTATGTCAGAGAGGATGTGCCGGCGGAGAGGGGTCGCAGTTGGAAGATAAGGGAGGAAAAGTGGAATGGCTGCTAAAGCCTAACGATGCGGGCAGTACTGCGGAGGTTGAGCCTTTACATGTGAGTGATCACATCATGGAAGAGGGAGCTTGGAATAAGCCTAAGATGGAGAGGGTCTTGTGGGAGGAGGATAGACGAATTATTCAATCAATTCCTATTATACAAACTCTAGTTCCTAATTCTTGGTGTTGGCAATATTCAAGGATTGGCTCTTTCACCACAAAAACTGCTTACAAACTCTACATTTTTGCTAATTTGGAGGCTTTCTCCTCTTCTTTGGGTATGCATGAGGAAGTAGAATCTGAAACCCATGCTTTATTTCTATGTAAAAGGGTTAGGAATGTTTTGATCGGGACCTTCCCTTCCATTATGGAGTTGGTAGATCTTCATTTATCTTTGCATGATATGTTGTCCCTTGTTGCTGACAAGCTCAATACTAATGGTTGCTTACTTTTTGGTGTCTCTTGTTGGGCGATTTGGGAGGACAGAAACCAGATGCTTCATAGAATTAAGGTCGATTGCCCCTTTGCATTCCAAGTTTGA

Protein sequence

MRKSGVGVTDSNRIREQRAAFSAEESERRKKKVVDARGVRLCQRGCAGGEGSQLEDKGGKVEWLLKPNDAGSTAEVEPLHVSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKLYIFANLEAFSSSLGMHEEVESETHALFLCKRVRNVLIGTFPSIMELVDLHLSLHDMLSLVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIKVDCPFAFQV

Homology

[Close]

BLAST of CaUC11G212010 vs. NCBI nr
Match: TXG71894.1 (hypothetical protein EZV62_000473 [Acer yangbiense])

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-09
Identity = 54/162 (33.33%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 81  VSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKL 140
           VS  I   G WN+  + R    E+  +I SIP+   L  +S+ W +++ G+FT K+AY++
Sbjct: 44  VSTLIESPGKWNESLIRRNFLPEEAELILSIPLSVYLRRDSFLWHFNKDGTFTVKSAYRV 103

Query: 141 YIFA--NLEAFSSSL---GMHEEVESETHALFLCKRVRNVLIGTFPSIMELVDLHLSLHD 200
            I A    EAF SS       E  E+  HAL+ CK V+       P   +L    L + D
Sbjct: 104 AISAMKRFEAFCSSALCPLCREGPETVEHALWRCKSVKPEW-NHCPLFSDL--NKLKIDD 163

Query: 201 MLS---LVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIKVDC 235
            L     VA   N    + F  + W +W +RNQ L R K  C
Sbjct: 164 FLGRVIWVASVANLENVVNFITTAWLVWNNRNQSLFREKAKC 202

[Close]

BLAST of CaUC11G212010 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-09
Identity = 48/198 (24.24%), Postives = 79/198 (39.90%), Query Frame = 0


Query: 81   VSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKL 140
            V+  I  +G W+   +      EDR +I S+PI    + +SW W Y + G+++ ++ YKL
Sbjct: 1053 VASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKL 1112

Query: 141  YIFANLEAFSSSL-------------------------GMHEEV---------------- 200
            Y+     A S+S                            HE +                
Sbjct: 1113 YMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPA 1172

Query: 201  --------ESETHALFLCKRVRNVLIGTFPSIMEL-VDLHLSLHDMLSLVADKLNTNGCL 229
                    ES  HA F CKR R +    FP +  L  + ++S  ++ S + ++L      
Sbjct: 1173 CTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLN 1232

[Close]

BLAST of CaUC11G212010 vs. NCBI nr
Match: XP_030505068.1 (uncharacterized protein LOC115720043 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-08
Identity = 43/167 (25.75%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 79   LHVSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAY 138
            L VS  I++   WN P ++ +  + D   I +IP+      +   W +   G+++ K+ Y
Sbjct: 970  LKVSALILDSRCWNSPLLKYLFLDSDVDKILNIPLALDDHQDCLMWHHESHGNYSVKSGY 1029

Query: 139  KLYIFANLEAFSSSLGMH--------------EEVESETHALFLCKRVRNVLIGTFPSIM 198
             L +    ++ S S  +H               + ES THALF CKR R V   +   + 
Sbjct: 1030 NLALSLEEQSPSVSEILHTRHIAASANSSICNRDKESITHALFFCKRARQVWQLSAFGLD 1089

Query: 199  ELVDLHLSLHDMLSLVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIK 232
            +++  H+SL++++  +A   +++    F    W+IW +RN+ +H  K
Sbjct: 1090 KIISPHMSLNEIILHLAATWSSSKLEQFATLLWSIWNERNREIHGSK 1136

[Close]

BLAST of CaUC11G212010 vs. NCBI nr
Match: XP_021627043.1 (uncharacterized protein LOC110625723 [Manihot esculenta])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-06
Identity = 41/175 (23.43%), Postives = 81/175 (46.29%), Query Frame = 0


Query: 63  WLLKPNDAGSTAEVEP---LHVSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVP 122
           WL +  D+  +    P   L+V   +M    WNK  + ++  + DR  I +IP+  +   
Sbjct: 59  WLKEAPDSLVSTPPPPNCTLYVVADLMIGHRWNKSLIAQLFNDRDRSCILNIPLSLSSHL 118

Query: 123 NSWCWQYSRIGSFTTKTAYKLYIFANLEAFSSSLGMHEEVESETHALFLCKRVRNVLIGT 182
           + WCW+++  G ++ K+AY+ ++   +   S     HE  ++  H L  C   R+  + +
Sbjct: 119 DVWCWKFASKGHYSVKSAYR-FLSRRVPVDSMCPLCHEAPKTVLHILVQCPFARSCWLSS 178

Query: 183 ---FPSIMELVDLHLSLHDMLSLVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIK 232
              +P+         SL +  SL     +     L  + CWA+W +RN ++ +++
Sbjct: 179 PLGWPAFSA-----ASLREWFSLAFLTASAENASLILMICWALWHNRNNVVWKVQ 227

[Close]

BLAST of CaUC11G212010 vs. NCBI nr
Match: XP_017250619.1 (PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-06
Identity = 54/245 (22.04%), Postives = 96/245 (39.18%), Query Frame = 0


Query: 51   GSQLEDKGGKVEWLLKPND-----AGSTAEVEPLHVSDHIMEEGAWNKPKMERVLWEEDR 110
            G+    +  K  WL +P        GS  EV+ +      +  G WN+  + +     D 
Sbjct: 1142 GNGQSTRAFKDPWLARPPSFLPITRGSEEEVKVV----EYITGGTWNRELIRQTFLSPDI 1201

Query: 111  RIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKLYIFANLEAFSSS------------- 170
            ++I  IP+ +    +SW W Y+  G++T K+ YKL    N +  SSS             
Sbjct: 1202 QLILEIPLSRFDHADSWFWHYNSQGNYTVKSGYKLVTNLNKDVSSSSEQVMGKWWKYFWA 1261

Query: 171  ------------LGMHEEV------------------------ESETHALFLCKRVRNVL 230
                         G HE +                        +S  HA+F C   + V 
Sbjct: 1262 NKIPRKILIFAWRGYHEILPTTKGLHIRKISLHSNCPLCGYADDSNAHAVFWCPFAQEVW 1321

Query: 231  -IGTFPSIMELVDLHLSLHDMLSLVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIKVDCP 241
             + T+P ++   +  +S  D+L  + + L  +   +  ++ W IW +RN+++H+ K   P
Sbjct: 1322 ELMTYPFLVGRKE-EISFKDVLLYITELLEKDDVDMMLLTTWGIWTERNKLIHQQKRRTP 1381

[Close]

BLAST of CaUC11G212010 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 54/162 (33.33%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 81  VSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKL 140
           VS  I   G WN+  + R    E+  +I SIP+   L  +S+ W +++ G+FT K+AY++
Sbjct: 44  VSTLIESPGKWNESLIRRNFLPEEAELILSIPLSVYLRRDSFLWHFNKDGTFTVKSAYRV 103

Query: 141 YIFA--NLEAFSSSL---GMHEEVESETHALFLCKRVRNVLIGTFPSIMELVDLHLSLHD 200
            I A    EAF SS       E  E+  HAL+ CK V+       P   +L    L + D
Sbjct: 104 AISAMKRFEAFCSSALCPLCREGPETVEHALWRCKSVKPEW-NHCPLFSDL--NKLKIDD 163

Query: 201 MLS---LVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIKVDC 235
            L     VA   N    + F  + W +W +RNQ L R K  C
Sbjct: 164 FLGRVIWVASVANLENVVNFITTAWLVWNNRNQSLFREKAKC 202

[Close]

BLAST of CaUC11G212010 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 48/198 (24.24%), Postives = 79/198 (39.90%), Query Frame = 0


Query: 81   VSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKL 140
            V+  I  +G W+   +      EDR +I S+PI    + +SW W Y + G+++ ++ YKL
Sbjct: 1053 VASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKL 1112

Query: 141  YIFANLEAFSSSL-------------------------GMHEEV---------------- 200
            Y+     A S+S                            HE +                
Sbjct: 1113 YMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPA 1172

Query: 201  --------ESETHALFLCKRVRNVLIGTFPSIMEL-VDLHLSLHDMLSLVADKLNTNGCL 229
                    ES  HA F CKR R +    FP +  L  + ++S  ++ S + ++L      
Sbjct: 1173 CTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLN 1232

[Close]

BLAST of CaUC11G212010 vs. ExPASy TrEMBL
Match: A0A803Q027 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 42/179 (23.46%), Postives = 81/179 (45.25%), Query Frame = 0


Query: 79  LHVSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAY 138
           L VS  I++   WN P ++ +  + D   I +IP+      +   W +   G+++ K+ Y
Sbjct: 757 LKVSALILDSRCWNSPLLKYLFLDSDVDKILNIPLALDDHQDCLMWHHESHGNYSVKSGY 816

Query: 139 KLYI--------------------------FANLEAFSSSLGMHEEVESETHALFLCKRV 198
            L +                            ++ A ++S   + + ES THALF CKR 
Sbjct: 817 NLALSLEEQSPSVSGIQAQLWWKKFWEILHTRHIAASANSSICNRDKESITHALFFCKRA 876

Query: 199 RNVLIGTFPSIMELVDLHLSLHDMLSLVADKLNTNGCLLFGVSCWAIWEDRNQMLHRIK 232
           R V   +   + +++  H+SL++++  +A   +++    F    W+IW +RN+ +H  K
Sbjct: 877 RQVWQLSAFGLDKIISPHMSLNEIILHLAATWSSSKLEQFATLLWSIWNERNREIHGSK 935

[Close]

BLAST of CaUC11G212010 vs. ExPASy TrEMBL
Match: A0A2N9F775 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14658 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-06
Identity = 39/155 (25.16%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 89   GAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAYKLYI---FAN 148
            GAW+   ++ V   +    IQ +P+  + V +S  W+ S  G FT K+AY+L       +
Sbjct: 1146 GAWDLSVLQEVFEPDTALRIQQLPLPNSTVNDSVLWKESTNGVFTVKSAYQLACSKRSTS 1205

Query: 149  LEAFSSSLGMHE---EVESETHALFLCKRVRNVLIGTFPSIMELVDLHLSLHDMLSLVAD 208
            +   SS++  +    ++E+ THAL+ C+   +V       + +L  + +    + S +  
Sbjct: 1206 VTGSSSTMTQYRKFWKIETPTHALWTCQYAGSVWALVPGRLSKLPTMEVDFFLLSSKIFQ 1265

Query: 209  KLNTNGCLLFGVSCWAIWEDRNQMLHRIKVDCPFA 238
             ++     L+ ++ WAIW  RN+ +H   +  P A
Sbjct: 1266 TMSREVIELWAITAWAIWYARNKFVHENFLPTPQA 1300

[Close]

BLAST of CaUC11G212010 vs. ExPASy TrEMBL
Match: A0A803P9P5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-06
Identity = 49/206 (23.79%), Postives = 79/206 (38.35%), Query Frame = 0


Query: 79  LHVSDHIMEEGAWNKPKMERVLWEEDRRIIQSIPIIQTLVPNSWCWQYSRIGSFTTKTAY 138
           + VS+ I  +  WN   +++   E D   IQSIP+      +   W +   G ++ K+ Y
Sbjct: 437 MKVSELITNQRQWNHSLLQQCFLESDVAKIQSIPLTLCDQSDQLIWNFENNGMYSVKSGY 496

Query: 139 KL--YIFANLEAFSSSLGM----------------------------------------- 198
            L   +   L A SS+  +                                         
Sbjct: 497 TLATRLEEQLPAASSNNSLQWWKKFWSLTLPSKIKIFLWRAMHDCLPVADILHHRHISDS 556

Query: 199 ------HEEVESETHALFLCKRVRNVLIGTFPSIMELVDLHLSLHDMLSLVADKLNTNGC 236
                 H+ +ES THALF CKR R +   +  SI + V  ++SL D+L  ++   ++   
Sbjct: 557 AICTLCHQAIESTTHALFWCKRPRKIWQLSSFSISDFVTHNMSLMDVLQNMSQIWSSKQI 616

The following BLAST results are available for this feature:

BLAST of CaUC11G212010 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG71894.1	3.5e-09	33.33	hypothetical protein EZV62_000473 [Acer yangbiense]	[more]
XP_022158377.1	6.0e-09	24.24	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_030505068.1	2.3e-08	25.75	uncharacterized protein LOC115720043 [Cannabis sativa]	[more]
XP_021627043.1	2.1e-06	23.43	uncharacterized protein LOC110625723 [Manihot esculenta]	[more]
XP_017250619.1	3.6e-06	22.04	PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]	[more]

BLAST of CaUC11G212010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC11G212010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7IST2	1.7e-09	33.33	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ...	[more]
A0A6J1DX30	2.9e-09	24.24	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803Q027	3.5e-07	23.46	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2N9F775	3.9e-06	25.16	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A803P9P5	6.7e-06	23.79	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CaUC11G212010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G212010.1	CaUC11G212010.1	mRNA