CaUC11G210930 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC11G210930
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	Ciama_Chr11: 23144732 .. 23145085 (-)
RNA-Seq Expression	CaUC11G210930
Synteny	CaUC11G210930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTCACTGTAACCCCCGTGTAAATTTGCATGTGAAGACATGCATGTGTGGAGAATTTGATTACAACATCCCTTGTGCACATGCACTCGCCGGTTGTCGGGTAAGTAATATTGATCCCTATACTCTATGCTTTAGTGTGTATACTGTTTTATCATTGTTATTAACAAGGTATGCAGAGCCTATATTCACTCTATGTCATATATCAGAGTGGAAAACAACACCGAAGTTCGTAGACAGAGTTGTCCTACATCCTAAGGTTGTTGGAATAGTCAGCCGTCGACCCATTGTTCGAATTCCATCAGCAGGTGAAATACGAAAAACAGATTTGCAAATGTCATCGGTATGGTAA

mRNA sequence

ATGGATGGTCACTGTAACCCCCGTGTAAATTTGCATGTGAAGACATGCATGTGTGGAGAATTTGATTACAACATCCCTTGTGCACATGCACTCGCCGGTTGTCGGGTAAGTAATATTGATCCCTATACTCTATGCTTTAGTGTGTATACTGTTTTATCATTGTTATTAACAAGGTATGCAGAGCCTATATTCACTCTATGTCATATATCAGAGTGGAAAACAACACCGAAGTTCGTAGACAGAGTTGTCCTACATCCTAAGGTTGTTGGAATAGTCAGCCGTCGACCCATTGTTCGAATTCCATCAGCAGGTGAAATACGAAAAACAGATTTGCAAATGTCATCGGTATGGTAA

Coding sequence (CDS)

ATGGATGGTCACTGTAACCCCCGTGTAAATTTGCATGTGAAGACATGCATGTGTGGAGAATTTGATTACAACATCCCTTGTGCACATGCACTCGCCGGTTGTCGGGTAAGTAATATTGATCCCTATACTCTATGCTTTAGTGTGTATACTGTTTTATCATTGTTATTAACAAGGTATGCAGAGCCTATATTCACTCTATGTCATATATCAGAGTGGAAAACAACACCGAAGTTCGTAGACAGAGTTGTCCTACATCCTAAGGTTGTTGGAATAGTCAGCCGTCGACCCATTGTTCGAATTCCATCAGCAGGTGAAATACGAAAAACAGATTTGCAAATGTCATCGGTATGGTAA

Protein sequence

MDGHCNPRVNLHVKTCMCGEFDYNIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKTDLQMSSVW

Homology

[Close]

BLAST of CaUC11G210930 vs. NCBI nr
Match: XP_022148136.1 (uncharacterized protein LOC111016889 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + +TC C EFDY  IPC+HA+AG  + NI+PY LC   YT  S ++  YA
Sbjct: 194 DGNLDGIVDFNSRTCSCREFDYFKIPCSHAIAGAMMRNINPYILCDEAYTTNSWVMA-YA 253

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S WK++P FVD  V  P +V  V RR  VRIPS GE+R+T
Sbjct: 254 EPIFPIGHVSTWKSSPDFVDTPVEAPDMVPRVGRRRTVRIPSTGEVRET 301

[Close]

BLAST of CaUC11G210930 vs. NCBI nr
Match: XP_022159268.1 (uncharacterized protein LOC111025678 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+L+   C C EFDY  IPC+HA+A   + NI+PY+LC   YT  S +L  YA
Sbjct: 383 DGNLDGIVDLNAMMCSCREFDYFKIPCSHAIAAATMRNINPYSLCDEAYTTNSWILA-YA 442

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + HIS W ++P+FV+  V  PK V  V RR  VRIPS GE+R+T
Sbjct: 443 EPIFPVGHISTWNSSPEFVNIPVEPPKTVPRVGRRKTVRIPSTGEVRQT 490

[Close]

BLAST of CaUC11G210930 vs. NCBI nr
Match: XP_022152406.1 (uncharacterized protein LOC111020142 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + + C C +FDY  IPC+HA+AG  + NI+PYTLC  VYT  S ++  YA
Sbjct: 82  DGNLDGIVDFNSRACSCRKFDYFEIPCSHAIAGAMMRNINPYTLCDEVYTTNSWVMA-YA 141

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S W ++P FVD  V  P +V  V RR  VRIPS GE+ +T
Sbjct: 142 EPIFPIGHVSTWNSSPDFVDTPVEAPDMVPRVGRRRTVRIPSTGEVHQT 189

[Close]

BLAST of CaUC11G210930 vs. NCBI nr
Match: XP_022158663.1 (uncharacterized protein LOC111025125 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + +TC C EFDY  I C+HA+ G  + NI+PYTLC   YT  S ++  YA
Sbjct: 149 DGNLDGIVDFNSRTCSCREFDYFKISCSHAIIGVMMRNINPYTLCDEAYTTNSWVMA-YA 208

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S WK++P FVD  V  P +V  V RR  VRIPS GE+R+T
Sbjct: 209 EPIFPIGHVSTWKSSPNFVDTPVEAPDMVLRVDRRRTVRIPSTGEVRET 256

[Close]

BLAST of CaUC11G210930 vs. NCBI nr
Match: XP_022153146.1 (uncharacterized protein LOC111020715 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + +TC C EFDY  IPC+HA+A   + NI+PYTLC   YT  S ++  YA
Sbjct: 507 DGNLDGIVDFNSRTCNCREFDYFKIPCSHAIAEAMMRNINPYTLCDEAYTTNSWVMA-YA 566

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S W ++P FVD  V  P +V  V RR  VRIPS GE+R+T
Sbjct: 567 EPIFPIGHVSTWNSSPDFVDTPVEAPYMVPRVGRRRTVRIPSTGEVRQT 614

[Close]

BLAST of CaUC11G210930 vs. ExPASy TrEMBL
Match: A0A6J1D4G8 (uncharacterized protein LOC111016889 OS=Momordica charantia OX=3673 GN=LOC111016889 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + +TC C EFDY  IPC+HA+AG  + NI+PY LC   YT  S ++  YA
Sbjct: 194 DGNLDGIVDFNSRTCSCREFDYFKIPCSHAIAGAMMRNINPYILCDEAYTTNSWVMA-YA 253

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S WK++P FVD  V  P +V  V RR  VRIPS GE+R+T
Sbjct: 254 EPIFPIGHVSTWKSSPDFVDTPVEAPDMVPRVGRRRTVRIPSTGEVRET 301

[Close]

BLAST of CaUC11G210930 vs. ExPASy TrEMBL
Match: A0A6J1DYC4 (uncharacterized protein LOC111025678 OS=Momordica charantia OX=3673 GN=LOC111025678 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+L+   C C EFDY  IPC+HA+A   + NI+PY+LC   YT  S +L  YA
Sbjct: 383 DGNLDGIVDLNAMMCSCREFDYFKIPCSHAIAAATMRNINPYSLCDEAYTTNSWILA-YA 442

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + HIS W ++P+FV+  V  PK V  V RR  VRIPS GE+R+T
Sbjct: 443 EPIFPVGHISTWNSSPEFVNIPVEPPKTVPRVGRRKTVRIPSTGEVRQT 490

[Close]

BLAST of CaUC11G210930 vs. ExPASy TrEMBL
Match: A0A6J1DWR5 (uncharacterized protein LOC111025125 OS=Momordica charantia OX=3673 GN=LOC111025125 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.8e-20
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + +TC C EFDY  I C+HA+ G  + NI+PYTLC   YT  S ++  YA
Sbjct: 149 DGNLDGIVDFNSRTCSCREFDYFKISCSHAIIGVMMRNINPYTLCDEAYTTNSWVMA-YA 208

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S WK++P FVD  V  P +V  V RR  VRIPS GE+R+T
Sbjct: 209 EPIFPIGHVSTWKSSPNFVDTPVEAPDMVLRVDRRRTVRIPSTGEVRET 256

[Close]

BLAST of CaUC11G210930 vs. ExPASy TrEMBL
Match: A0A6J1DJT1 (uncharacterized protein LOC111020715 OS=Momordica charantia OX=3673 GN=LOC111020715 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.8e-20
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + +TC C EFDY  IPC+HA+A   + NI+PYTLC   YT  S ++  YA
Sbjct: 507 DGNLDGIVDFNSRTCNCREFDYFKIPCSHAIAEAMMRNINPYTLCDEAYTTNSWVMA-YA 566

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S W ++P FVD  V  P +V  V RR  VRIPS GE+R+T
Sbjct: 567 EPIFPIGHVSTWNSSPDFVDTPVEAPYMVPRVGRRRTVRIPSTGEVRQT 614

[Close]

BLAST of CaUC11G210930 vs. ExPASy TrEMBL
Match: A0A6J1DHM2 (uncharacterized protein LOC111020142 OS=Momordica charantia OX=3673 GN=LOC111020142 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.8e-20
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 2   DGHCNPRVNLHVKTCMCGEFDY-NIPCAHALAGCRVSNIDPYTLCFSVYTVLSLLLTRYA 61
           DG+ +  V+ + + C C +FDY  IPC+HA+AG  + NI+PYTLC  VYT  S ++  YA
Sbjct: 82  DGNLDGIVDFNSRACSCRKFDYFEIPCSHAIAGAMMRNINPYTLCDEVYTTNSWVMA-YA 141

Query: 62  EPIFTLCHISEWKTTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKT 110
           EPIF + H+S W ++P FVD  V  P +V  V RR  VRIPS GE+ +T
Sbjct: 142 EPIFPIGHVSTWNSSPDFVDTPVEAPDMVPRVGRRRTVRIPSTGEVHQT 189

The following BLAST results are available for this feature:

BLAST of CaUC11G210930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148136.1	1.6e-20	50.46	uncharacterized protein LOC111016889 [Momordica charantia]	[more]
XP_022159268.1	1.4e-19	50.46	uncharacterized protein LOC111025678 [Momordica charantia]	[more]
XP_022152406.1	1.8e-19	48.62	uncharacterized protein LOC111020142 [Momordica charantia]	[more]
XP_022158663.1	1.8e-19	49.54	uncharacterized protein LOC111025125 [Momordica charantia]	[more]
XP_022153146.1	1.8e-19	49.54	uncharacterized protein LOC111020715 [Momordica charantia]	[more]

BLAST of CaUC11G210930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC11G210930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4G8	8.0e-21	50.46	uncharacterized protein LOC111016889 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DYC4	6.7e-20	50.46	uncharacterized protein LOC111025678 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DWR5	8.8e-20	49.54	uncharacterized protein LOC111025125 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DJT1	8.8e-20	49.54	uncharacterized protein LOC111020715 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DHM2	8.8e-20	48.62	uncharacterized protein LOC111020142 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of CaUC11G210930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 14..40 e-value: 0.0014 score: 25.9
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 13..32 e-value: 3.2E-4 score: 20.3
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 7..38 score: 8.493494

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC11G210930.1	CaUC11G210930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0008270	zinc ion binding