CaUC10G194100 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G194100
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	TFIIS N-terminal domain-containing protein
Location	Ciama_Chr10: 29055536 .. 29059288 (-)
RNA-Seq Expression	CaUC10G194100
Synteny	CaUC10G194100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAGAAAGAAAGAAAGAAAGAAAGAACATATTTGTGAATGCTGAAGGGAGGATTTTTGGTTTGAGTACCCCAAATTCTGTGTCCTTTTTGCAGCACCCAGTTTGATTCTAATCTCTTAATTTCTAGAGAGAGAAACCAAACAAAAAAACAAACAAAAAAAAATACCCATTCCCCATTTCCAATTTCCAAATCCATTCTCATTTCTTCCATTGAAAGAGAGAGAGAGGGAGAGAGATTGAAAGATTGAATTCTTGTTCATATTTTCTCTTCTCTTTCTTTTTCTCTTCTATTCTCTTCTATTTTCATTTCCCATATTCCCGATATTTCTCCTCCCAGGAAATCCCGGAGCTTTTCCGGGATTGAAGAAAAGCAACCAAGTTTCTCTGTTACTACCTTTTCAATTTTTGAACAATCCCATAAAGTAGAACTTGGGTTTTGATCAATACCTTGTTTTGTTCTTGATCCGATCCTTAATTTTCAAAAAATTAACGAAATCGAACACCATTACTTACTCTACACACATTAACCAACTCATTTTTTTGCGTTTAAACGGATGAAACTCCGACTGTTAATGGGTTTGTTGCTAACGATTTTTTCTGGGAATCGGATTCTTGTGGTGCTGGATTAGTGTTAGATAGAGGGGTTTTCTGTTTTGGGTGTTGATTTCTTTCAAAACCCACCTTCAATCAACCGGGTTCAACCCCAATTGCTGTGTTTTCTTCATATTTAGGTTTTCGTTTTCGACGATGGAATTCCCACTTCGATTCTGAGTATTTTGTTTGAATTTCATCTTGGTTTGATCGAGGTTAGTTTCTCCAGATTCCGATCATGGCTGCTAAGTCTGGGTCGCTGGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCTGATATTTTTGGCATAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCGGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGTTTGGGCTGCGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGACGACGGTGATACGGGTTTCAAGAGCGATTTCGCCGGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGTAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTCAAATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGAAGAGGTAACGAATGCTTTGACTGTTTTCATTTTCTGTGTTGTTCTTTTGTCTCTCATGATGATCACTGTTCTGTTTTTGTGTTCTTGTGCAGTCTGATTCAGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTCTGCGGGTGATTTGAATTGCTTTGTTTGCTCTTGCATTTCTAGGGGGGACTTAGTTTTTGTAGTTGTTTTAGTTTCTGGGGAAATTCTGGACTTAATTTTTGTGGATTTTTCTCCCTTTATCAGGCAACTGAGATTGGCAAAGCTGTTAATGGCCTTCGAAAGCATGGATCCAAGCGCATCCGTCATCTTGCTCGAGTTCTTATCATGTACTAAATCTGTCCTTCAAAGTTCAATAAATATATAGATGATATGTGATGAATGCCCAAAGTAAATTTTCTGTTGACTCTCTTTCTGGCACCTTCTATATGCTTCTTTTTTCTTTTGGATTCGTCCGCATTTGTCTGCTGTTGCTTTGTCTGCAAAGTCCAATAGATCTAATTGATTTGGTGTTGAACTTTTAAGATCAAGGATTTGTTTTCTCTTTTGTCTGAGTTTTATGTATGGCTTGCTGCATAGGATCAACGAAGAATGATCACTTTCTACCATTCAGTGTCCATTATTTTGTTTATTGTATGGATTGAAGAGTTTTTCTAGCTCATCTGTGTTTTCACAACTTGTTGCTCATTGAGAGAGTTCACCATCTGCCATGTCCTATCTTCTGAACTCGTATAAAGAAACCTGGTCTTTGATAATGTTCACATTCATAATTCACTTAATGCAAGTAGTAGATAAGGAAGATATGATTTCCAAGATTCTTGTTACTGCTTGTTATTACTTTGTTTGAGAGTAAAAGTTCTACTTTTGGGGTTGCAGGGAGTGGAAAGAAATGGTGGACGTGTGGGTAAAAGCTACTGCTGCTGTTCAAGGTAGAGTTTGTTCCCTATGCATGCATCTATTAGTTCATGCCAATTTTCTGGAGTTCTTCATTGAGAAATGCTTTTGTTTTTGTTTACAAAAAGGTGCAGAAGTCACACCAGATTCCAAAAACAAGTCTGCTGCAGTAAAAGAAGAAGATGATTATGAAGAAGAAGAAGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCTATGGAGCTCTCACAAGTATGTCTCCATTTTCTTGTTATATTGGGTTGTTTATTCTGAAGAGAAGTTATCTGCATCGGTTCTAATCAACTGTATTTTACTTTCGGTTCCGTTCCCTTCCTTGGTGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCATTATGCAATATCCTATGCCTTTCTTAATCACTTGCTATCAGTTCAGTTTTTAAGCTTCCCATTTGTTAGATTCATGATTACAAATTGGGATATATGTTGTTTCAGATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCCATAATGTGAGAAAAACATCAAATGGCAATCAAAACCCTATGAGGTGTAACCAACAAACCGCTCGAGAGGTCAATGTGCTTGCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAAGCCATCCTCAAATACAAATTCTGGCCTTTTGAGGCCACAGAAGCTAAGTACAGAACAGAAAGACAACCACGAGAAGTTCCAGCGCAAATTGGATAAACCTACAATCCCAAAGAGGAACCAGCAAGATGTAAGTACAAGAACATCCATATCGTTAGTAATTTGGTTAGACATTTGTACTTTTACCTGATTTGTCCAATTTGTGTTTTAACAGAACTTCAAGTGCTCGGATGAGGTTGCAGTTCAGGTGAAACTAGAAGCAACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTATTTTGTTTTCTGTCTGTGATTTATCAATTCCGGTAGCAGTTTTGTAGGCAGTATAAAAGGTTTATTACTAAATGAACTATCAATCCGAGCAAATTAAGTTAAATATGGTCGAGTTTGACAACTTGATTTGGAATGCATTGCAACTATAACTACAAAAGTTCTCAAAAATTCTGATTTTTGGTGTTTATTCAACAGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGACTCGGCCACAGAAATCCACACCTAAAATCTGGAGGCTACAACCGGCATTGGGCAAATGGGCGGCGTTAGGATCGTCAATAATAATAAAGTAGAAGACTAATGCTTCCAGCATACTGTCCAGGTGACTTCCATCCAGAATCAGGTGGAAGATCATGCTAAAGCTCCCTGGCAAACAGTGTCTTGACCGACTCGCTTAAAGGTAAACAACAAAAAACTTGGTTTCAGTCTGTCGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAGTTGGAATT

mRNA sequence

AAAGAAAGAAAGAAAGAAAGAAAGAAAGAACATATTTGTGAATGCTGAAGGGAGGATTTTTGGTTTGAGTACCCCAAATTCTGTGTCCTTTTTGCAGCACCCAGTTTGATTCTAATCTCTTAATTTCTAGAGAGAGAAACCAAACAAAAAAACAAACAAAAAAAAATACCCATTCCCCATTTCCAATTTCCAAATCCATTCTCATTTCTTCCATTGAAAGAGAGAGAGAGGGAGAGAGATTGAAAGATTGAATTCTTGTTCATATTTTCTCTTCTCTTTCTTTTTCTCTTCTATTCTCTTCTATTTTCATTTCCCATATTCCCGATATTTCTCCTCCCAGGAAATCCCGGAGCTTTTCCGGGATTGAAGAAAAGCAACCAAGTTTCTCTGTTACTACCTTTTCAATTTTTGAACAATCCCATAAAGTAGAACTTGGGTTTTGATCAATACCTTGTTTTGTTCTTGATCCGATCCTTAATTTTCAAAAAATTAACGAAATCGAACACCATTACTTACTCTACACACATTAACCAACTCATTTTTTTGCGTTTAAACGGATGAAACTCCGACTGTTAATGGGTTTGTTGCTAACGATTTTTTCTGGGAATCGGATTCTTGTGGTGCTGGATTAGTGTTAGATAGAGGGGTTTTCTGTTTTGGGTGTTGATTTCTTTCAAAACCCACCTTCAATCAACCGGGTTCAACCCCAATTGCTGTGTTTTCTTCATATTTAGGTTTTCGTTTTCGACGATGGAATTCCCACTTCGATTCTGAGTATTTTGTTTGAATTTCATCTTGGTTTGATCGAGGTTAGTTTCTCCAGATTCCGATCATGGCTGCTAAGTCTGGGTCGCTGGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCTGATATTTTTGGCATAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCGGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGTTTGGGCTGCGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGACGACGGTGATACGGGTTTCAAGAGCGATTTCGCCGGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGTAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTCAAATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTCTGCGGGCAACTGAGATTGGCAAAGCTGTTAATGGCCTTCGAAAGCATGGATCCAAGCGCATCCGTCATCTTGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACGTGTGGGTAAAAGCTACTGCTGCTGTTCAAGGTGCAGAAGTCACACCAGATTCCAAAAACAAGTCTGCTGCAGTAAAAGAAGAAGATGATTATGAAGAAGAAGAAGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCTATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCCATAATGTGAGAAAAACATCAAATGGCAATCAAAACCCTATGAGGTGTAACCAACAAACCGCTCGAGAGGTCAATGTGCTTGCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAAGCCATCCTCAAATACAAATTCTGGCCTTTTGAGGCCACAGAAGCTAAGTACAGAACAGAAAGACAACCACGAGAAGTTCCAGCGCAAATTGGATAAACCTACAATCCCAAAGAGGAACCAGCAAGATAACTTCAAGTGCTCGGATGAGGTTGCAGTTCAGGTGAAACTAGAAGCAACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGACTCGGCCACAGAAATCCACACCTAAAATCTGGAGGCTACAACCGGCATTGGGCAAATGGGCGGCGTTAGGATCGTCAATAATAATAAAGTAGAAGACTAATGCTTCCAGCATACTGTCCAGGTGACTTCCATCCAGAATCAGGTGGAAGATCATGCTAAAGCTCCCTGGCAAACAGTGTCTTGACCGACTCGCTTAAAGGTAAACAACAAAAAACTTGGTTTCAGTCTGTCGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAGTTGGAATT

Coding sequence (CDS)

ATGGCTGCTAAGTCTGGGTCGCTGGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCTGATATTTTTGGCATAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCGGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGTTTGGGCTGCGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGACGACGGTGATACGGGTTTCAAGAGCGATTTCGCCGGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGTAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTCAAATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTCTGCGGGCAACTGAGATTGGCAAAGCTGTTAATGGCCTTCGAAAGCATGGATCCAAGCGCATCCGTCATCTTGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACGTGTGGGTAAAAGCTACTGCTGCTGTTCAAGGTGCAGAAGTCACACCAGATTCCAAAAACAAGTCTGCTGCAGTAAAAGAAGAAGATGATTATGAAGAAGAAGAAGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCTATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCCATAATGTGAGAAAAACATCAAATGGCAATCAAAACCCTATGAGGTGTAACCAACAAACCGCTCGAGAGGTCAATGTGCTTGCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAAGCCATCCTCAAATACAAATTCTGGCCTTTTGAGGCCACAGAAGCTAAGTACAGAACAGAAAGACAACCACGAGAAGTTCCAGCGCAAATTGGATAAACCTACAATCCCAAAGAGGAACCAGCAAGATAACTTCAAGTGCTCGGATGAGGTTGCAGTTCAGGTGAAACTAGAAGCAACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGACTCGGCCACAGAAATCCACACCTAAAATCTGGAGGCTACAACCGGCATTGGGCAAATGGGCGGCGTTAG

Protein sequence

MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVKEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKTSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKDNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR

Homology

[Close]

BLAST of CaUC10G194100 vs. NCBI nr
Match: XP_038904902.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Benincasa hispida])

HSP 1 Score: 844.3 bits (2180), Expect = 4.7e-241
Identity = 437/452 (96.68%), Postives = 446/452 (98.67%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNGLRKHGSK IRHLARVLIMEWKEMVD WVKATAAVQGAEVTPDSKNKSA+V
Sbjct: 181 ATEIGKAVNGLRKHGSKHIRHLARVLIMEWKEMVDEWVKATAAVQGAEVTPDSKNKSASV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEED+YEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDNYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKD 360
           TSNGNQNP+R NQQTA EVNVLAKEN TQMKEQVVKPN+PSSNTNSGLLRPQKLSTEQKD
Sbjct: 301 TSNGNQNPVRSNQQTALEVNVLAKENMTQMKEQVVKPNRPSSNTNSGLLRPQKLSTEQKD 360

Query: 361 NHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLDKPTIPKRNQQ N+KCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLDKPTIPKRNQQVNYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           MELHDLPKQGLGHRNPHLKSGGYNR+WANGRR
Sbjct: 421 MELHDLPKQGLGHRNPHLKSGGYNRNWANGRR 452

[Close]

BLAST of CaUC10G194100 vs. NCBI nr
Match: XP_008443218.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo] >KAA0053912.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa] >TYK25493.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa])

HSP 1 Score: 837.0 bits (2161), Expect = 7.5e-239
Identity = 435/453 (96.03%), Postives = 446/453 (98.45%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHLARVLIMEWK+MVDVWV+ATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEEDDY EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKP-NKPSSNTNSGLLRPQKLSTEQK 360
           TSNGNQNP RCNQQT REVNVL+KENKTQMKEQVVKP NKPSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQK 360

Query: 361 DNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NRHW NGRR
Sbjct: 421 VMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CaUC10G194100 vs. NCBI nr
Match: XP_038904903.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Benincasa hispida])

HSP 1 Score: 835.5 bits (2157), Expect = 2.2e-238
Identity = 435/452 (96.24%), Postives = 444/452 (98.23%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNGLRKHGSK IRHLARVLIMEWKEMVD WVKATAAVQ  EVTPDSKNKSA+V
Sbjct: 181 ATEIGKAVNGLRKHGSKHIRHLARVLIMEWKEMVDEWVKATAAVQ--EVTPDSKNKSASV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEED+YEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDNYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKD 360
           TSNGNQNP+R NQQTA EVNVLAKEN TQMKEQVVKPN+PSSNTNSGLLRPQKLSTEQKD
Sbjct: 301 TSNGNQNPVRSNQQTALEVNVLAKENMTQMKEQVVKPNRPSSNTNSGLLRPQKLSTEQKD 360

Query: 361 NHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLDKPTIPKRNQQ N+KCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLDKPTIPKRNQQVNYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           MELHDLPKQGLGHRNPHLKSGGYNR+WANGRR
Sbjct: 421 MELHDLPKQGLGHRNPHLKSGGYNRNWANGRR 450

[Close]

BLAST of CaUC10G194100 vs. NCBI nr
Match: XP_004136624.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativus] >KGN59410.1 hypothetical protein Csa_002527 [Cucumis sativus])

HSP 1 Score: 831.2 bits (2146), Expect = 4.1e-237
Identity = 433/453 (95.58%), Postives = 444/453 (98.01%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHLARVLIMEWKEMVD+WV+ATAAVQGAEVTPDSKNKSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEEDDY EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKP-NKPSSNTNSGLLRPQKLSTEQK 360
           TSNGNQNP RCNQQT REVNVL+KENKTQMKEQVVKP NKPSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQK 360

Query: 361 DNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NR+WANGRR
Sbjct: 421 VMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of CaUC10G194100 vs. NCBI nr
Match: XP_023539160.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 740.7 bits (1911), Expect = 7.4e-210
Identity = 387/452 (85.62%), Postives = 414/452 (91.59%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKS SLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSASLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   DG+TGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVD L+
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNGLRKHGSKRIRHL R LI EWKEMVD+WVKATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           +EEDDY  E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK   N RK
Sbjct: 241 QEEDDY--EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKHDNGRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKD 360
           TSNG+QNPMRC QQT REVNV+AK+NK+QMKEQVVKPNKP SN NSGL RPQK S+ QKD
Sbjct: 301 TSNGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSSVQKD 360

Query: 361 NHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK++KPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           MELHD+PKQG+GHRN HLKSGG+NRHW NGRR
Sbjct: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CaUC10G194100 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.2e-92
Identity = 229/466 (49.14%), Postives = 287/466 (61.59%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLDSWR YF R  +SDIFGIID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDIDGDDGDTGFKSDFAGDGCEFE-AGGSKESKVYSSRDDIGEMNCNRVSNF 124
           D +EL+V GD + + G TG          ++E AGGSKESK  SSR D    N   VSN+
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGD----NNQIVSNY 123

Query: 125 SFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVKE 244
           EIGKAVNGLRKH S +IR LA+ LI EWKE+VD WV  T  + GAE TP+S N S     
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSV---- 243

Query: 245 EDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKTS 304
               +EEE  PS P D    FT +P   E+S FFD +D DGNPRNS +   +R + R+  
Sbjct: 244 ---LDEEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQ 303

Query: 305 NGNQNPMRCNQQTAREVNVLAKENKTQMKEQ--VVKPNKPSSNTN-SGLLRPQKLSTEQK 364
           N  +                 K   TQM+ Q    +  KPSS T+  G  RP K STEQ+
Sbjct: 304 NIAKR----------------KPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQR 363

Query: 365 DNHEKFQ-RKLDKPTIPKR------------NQQDNFKCSDEVAVQVKLEATKRKLQESY 424
             +E     K +KP I ++             QQ+  K  D      K E  KRKLQESY
Sbjct: 364 MKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESY 423

Query: 425 QQAENAKKQRTIQVMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           Q  ENAKKQRTIQV+E+  +PKQG   +    + G  NR+WANGR+
Sbjct: 424 QHHENAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CaUC10G194100 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.8e-68
Identity = 188/446 (42.15%), Postives = 247/446 (55.38%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            + A +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRATEI 184
           G++   T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVNGLR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSV------ 246

Query: 245 DYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKTSNG 304
             +EEE  PSPP D    +  +P   ELSQ  D +D DGNPR+S   V+++H  +  S+ 
Sbjct: 247 -IDEEEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSA 306

Query: 305 NQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKDNHEK 364
            + P   N   A  V     + +T+ +E  V+P K S+       R  K S EQ  +   
Sbjct: 307 GRRPKGTND--ANVVGRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS--A 366

Query: 365 FQRKLDKPTIPKRN----QQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 424
            QRK    T  KR     QQD  K  D      K E  KRKLQESY Q ENAK+QRTIQV
Sbjct: 367 IQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQV 395

Query: 425 MELHDLPKQGLGHRNPHLKSGGYNRH 447
           +E   +PKQ    + P LK     R+
Sbjct: 427 LE--TIPKQNKVQK-PQLKRPATRRY 395

[Close]

BLAST of CaUC10G194100 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-21
Identity = 122/449 (27.17%), Postives = 194/449 (43.21%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-- 67
           LD +R+   NA  D++  ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 68  ---RVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSN 127
               V  A  G ++             G   E      +E    ++ +++ E + N   +
Sbjct: 63  GGGNVTEAAIGRVNN------------GRVHEETEEEDEEGVTAAAEEEVREKSVNVEDD 122

Query: 128 FSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRA 187
             F     L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++   L+ 
Sbjct: 123 DDFDPFAGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQE 182

Query: 188 TEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVK 247
           T+IG+ VN +RKH S  +R LA+ L+ +WKE VD WVK     Q  ++ P S      + 
Sbjct: 183 TDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS------LI 242

Query: 248 EEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKT 307
            ++D   ++ L +    +   F   P                 P+N         N+   
Sbjct: 243 ADEDSPVQKALHNGSRQQVPDFGYSPV----------------PQNGYSSSSKNSNI--- 302

Query: 308 SNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKDN 367
           +   + P     Q  RE                 KP++PS +                  
Sbjct: 303 TEPERKPRPVAPQPRRE------------SPSPAKPSRPSPS------------------ 353

Query: 368 HEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVM 427
                    + TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM
Sbjct: 363 ---------QQTIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVM 353

Query: 428 ELHDLPKQGLGHRNPHLKSGGYN---RHW 448
           ++HD+PK   G   P  + GG +   RHW
Sbjct: 423 DIHDIPKPKKGGFFP--RKGGSSQGGRHW 353

[Close]

BLAST of CaUC10G194100 vs. ExPASy Swiss-Prot
Match: Q14241 (Elongin-A OS=Homo sapiens OX=9606 GN=ELOA PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 8.7e-04
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 162 LFESLRRLELMALSVDTLRATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKAT 221
           L + L++L  + ++VD L  T +GK VN LRKH  + +   AR L+ +WK++V V   A 
Sbjct: 52  LLKYLKKLSTLPITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLVPVERNAE 111

Query: 222 AAVQGAEVTPDSKNKSAAVKEEDDYE 248
              Q  E +   K    A+++E++ E
Sbjct: 112 PDEQDFEKSNSRKRPRDALQKEEEME 135

[Close]

BLAST of CaUC10G194100 vs. ExPASy Swiss-Prot
Match: Q8CB77 (Elongin-A OS=Mus musculus OX=10090 GN=Eloa PE=1 SV=3)

HSP 1 Score: 46.6 bits (109), Expect = 8.7e-04
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 162 LFESLRRLELMALSVDTLRATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKAT 221
           L + L++L ++ ++VD L  T +GK VN  RKH  +++ + AR L+ +WK++V V   + 
Sbjct: 26  LLKYLKKLSILPITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVPVERNSE 85

Query: 222 AAVQGAEVTPDSKNKSAAVKEEDDYE 248
           A  Q  E     K    A++ E++ E
Sbjct: 86  AEDQDFEKNNSRKRPRDALQREEELE 109

[Close]

BLAST of CaUC10G194100 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 837.0 bits (2161), Expect = 3.6e-239
Identity = 435/453 (96.03%), Postives = 446/453 (98.45%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHLARVLIMEWK+MVDVWV+ATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEEDDY EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKP-NKPSSNTNSGLLRPQKLSTEQK 360
           TSNGNQNP RCNQQT REVNVL+KENKTQMKEQVVKP NKPSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQK 360

Query: 361 DNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NRHW NGRR
Sbjct: 421 VMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CaUC10G194100 vs. ExPASy TrEMBL
Match: A0A1S3B7K4 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo OX=3656 GN=LOC103486863 PE=4 SV=1)

HSP 1 Score: 837.0 bits (2161), Expect = 3.6e-239
Identity = 435/453 (96.03%), Postives = 446/453 (98.45%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHLARVLIMEWK+MVDVWV+ATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEEDDY EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKP-NKPSSNTNSGLLRPQKLSTEQK 360
           TSNGNQNP RCNQQT REVNVL+KENKTQMKEQVVKP NKPSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQK 360

Query: 361 DNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NRHW NGRR
Sbjct: 421 VMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CaUC10G194100 vs. ExPASy TrEMBL
Match: A0A0A0LBK9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 831.2 bits (2146), Expect = 2.0e-237
Identity = 433/453 (95.58%), Postives = 444/453 (98.01%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDG+TGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVDTL+
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHLARVLIMEWKEMVD+WV+ATAAVQGAEVTPDSKNKSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           KEEDDY EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNR+NVRK
Sbjct: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKP-NKPSSNTNSGLLRPQKLSTEQK 360
           TSNGNQNP RCNQQT REVNVL+KENKTQMKEQVVKP NKPSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQK 360

Query: 361 DNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NR+WANGRR
Sbjct: 421 VMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of CaUC10G194100 vs. ExPASy TrEMBL
Match: A0A6J1FCK1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita moschata OX=3662 GN=LOC111442859 PE=4 SV=1)

HSP 1 Score: 737.6 bits (1903), Expect = 3.0e-209
Identity = 386/452 (85.40%), Postives = 413/452 (91.37%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   DG+TGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVD L+
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNGLRKHGSKRIRHL R LI EWKEMVD+WVKATAAV G+EVTPDSK+   + 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSE 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           +EEDDY  E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R N RK
Sbjct: 241 QEEDDY--EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKD 360
           TS+G+QNPMRC QQT REVNV+AK+NK+QMKEQVVKPNKP SN NSG  R QK ST QKD
Sbjct: 301 TSSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKD 360

Query: 361 NHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK++KPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           MELHD+PKQG+GHRN HLKSGG+NRHW NGRR
Sbjct: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CaUC10G194100 vs. ExPASy TrEMBL
Match: A0A6J1I7W1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita maxima OX=3661 GN=LOC111469992 PE=4 SV=1)

HSP 1 Score: 736.5 bits (1900), Expect = 6.7e-209
Identity = 389/458 (84.93%), Postives = 415/458 (90.61%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   D +TGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLR 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVD L+
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNGLRKHGSKRIRHL R LI EWKEMVD+WVKATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240

Query: 241 KEEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRK 300
           +EEDDY  E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R N RK
Sbjct: 241 QEEDDY--EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRK 300

Query: 301 TSNGNQNPMRCNQQTAREVNVLA------KENKTQMKEQVVKPNKPSSNTNSGLLRPQKL 360
           TSNG+QNPMRC QQT REVNV+A      K+NK+QMKEQVVKPNKP SN NSGL RPQK 
Sbjct: 301 TSNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKP 360

Query: 361 STEQKDNHEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           ST QKDNHEK QRK++KPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           QRTIQVMELHD+PKQG+GHRN HLKSGG+NRHW NGRR
Sbjct: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of CaUC10G194100 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 340.9 bits (873), Expect = 1.6e-93
Identity = 229/466 (49.14%), Postives = 287/466 (61.59%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLDSWR YF R  +SDIFGIID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDIDGDDGDTGFKSDFAGDGCEFE-AGGSKESKVYSSRDDIGEMNCNRVSNF 124
           D +EL+V GD + + G TG          ++E AGGSKESK  SSR D    N   VSN+
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGD----NNQIVSNY 123

Query: 125 SFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVKE 244
           EIGKAVNGLRKH S +IR LA+ LI EWKE+VD WV  T  + GAE TP+S N S     
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSV---- 243

Query: 245 EDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKTS 304
               +EEE  PS P D    FT +P   E+S FFD +D DGNPRNS +   +R + R+  
Sbjct: 244 ---LDEEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQ 303

Query: 305 NGNQNPMRCNQQTAREVNVLAKENKTQMKEQ--VVKPNKPSSNTN-SGLLRPQKLSTEQK 364
           N  +                 K   TQM+ Q    +  KPSS T+  G  RP K STEQ+
Sbjct: 304 NIAKR----------------KPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQR 363

Query: 365 DNHEKFQ-RKLDKPTIPKR------------NQQDNFKCSDEVAVQVKLEATKRKLQESY 424
             +E     K +KP I ++             QQ+  K  D      K E  KRKLQESY
Sbjct: 364 MKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESY 423

Query: 425 QQAENAKKQRTIQVMELHDLPKQGLGHRNPHLKSGGYNRHWANGRR 453
           Q  ENAKKQRTIQV+E+  +PKQG   +    + G  NR+WANGR+
Sbjct: 424 QHHENAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CaUC10G194100 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-69
Identity = 188/446 (42.15%), Postives = 247/446 (55.38%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            + A +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRATEI 184
           G++   T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVNGLR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSV------ 246

Query: 245 DYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKTSNG 304
             +EEE  PSPP D    +  +P   ELSQ  D +D DGNPR+S   V+++H  +  S+ 
Sbjct: 247 -IDEEEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSA 306

Query: 305 NQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKDNHEK 364
            + P   N   A  V     + +T+ +E  V+P K S+       R  K S EQ  +   
Sbjct: 307 GRRPKGTND--ANVVGRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS--A 366

Query: 365 FQRKLDKPTIPKRN----QQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 424
            QRK    T  KR     QQD  K  D      K E  KRKLQESY Q ENAK+QRTIQV
Sbjct: 367 IQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQV 395

Query: 425 MELHDLPKQGLGHRNPHLKSGGYNRH 447
           +E   +PKQ    + P LK     R+
Sbjct: 427 LE--TIPKQNKVQK-PQLKRPATRRY 395

[Close]

BLAST of CaUC10G194100 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 206.5 bits (524), Expect = 4.7e-53
Identity = 122/270 (45.19%), Postives = 161/270 (59.63%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            + A +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRATEI 184
           G++   T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVNGLR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSV------ 232

Query: 245 DYEEEEGLPSPPLDEAAFFTTQPTSMELSQ 275
             +EEE  PSPP D    +  +P   ELSQ
Sbjct: 247 -IDEEEAFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of CaUC10G194100 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-22
Identity = 122/449 (27.17%), Postives = 194/449 (43.21%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-- 67
           LD +R+   NA  D++  ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 68  ---RVELAVAGDIDGDDGDTGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSN 127
               V  A  G ++             G   E      +E    ++ +++ E + N   +
Sbjct: 63  GGGNVTEAAIGRVNN------------GRVHEETEEEDEEGVTAAAEEEVREKSVNVEDD 122

Query: 128 FSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLRA 187
             F     L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++   L+ 
Sbjct: 123 DDFDPFAGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQE 182

Query: 188 TEIGKAVNGLRKHGSKRIRHLARVLIMEWKEMVDVWVKATAAVQGAEVTPDSKNKSAAVK 247
           T+IG+ VN +RKH S  +R LA+ L+ +WKE VD WVK     Q  ++ P S      + 
Sbjct: 183 TDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS------LI 242

Query: 248 EEDDYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRHNVRKT 307
            ++D   ++ L +    +   F   P                 P+N         N+   
Sbjct: 243 ADEDSPVQKALHNGSRQQVPDFGYSPV----------------PQNGYSSSSKNSNI--- 302

Query: 308 SNGNQNPMRCNQQTAREVNVLAKENKTQMKEQVVKPNKPSSNTNSGLLRPQKLSTEQKDN 367
           +   + P     Q  RE                 KP++PS +                  
Sbjct: 303 TEPERKPRPVAPQPRRE------------SPSPAKPSRPSPS------------------ 353

Query: 368 HEKFQRKLDKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVM 427
                    + TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM
Sbjct: 363 ---------QQTIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVM 353

Query: 428 ELHDLPKQGLGHRNPHLKSGGYN---RHW 448
           ++HD+PK   G   P  + GG +   RHW
Sbjct: 423 DIHDIPKPKKGGFFP--RKGGSSQGGRHW 353

The following BLAST results are available for this feature:

BLAST of CaUC10G194100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904902.1	4.7e-241	96.68	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Ben...	[more]
XP_008443218.1	7.5e-239	96.03	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]
XP_038904903.1	2.2e-238	96.24	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Ben...	[more]
XP_004136624.1	4.1e-237	95.58	probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativu...	[more]
XP_023539160.1	7.4e-210	85.62	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo...	[more]

BLAST of CaUC10G194100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	2.2e-92	49.14	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	3.8e-68	42.15	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	1.6e-21	27.17	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q14241	8.7e-04	33.72	Elongin-A OS=Homo sapiens OX=9606 GN=ELOA PE=1 SV=2	[more]
Q8CB77	8.7e-04	32.56	Elongin-A OS=Mus musculus OX=10090 GN=Eloa PE=1 SV=3	[more]

BLAST of CaUC10G194100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDQ2	3.6e-239	96.03	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A1S3B7K4	3.6e-239	96.03	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A0A0LBK9	2.0e-237	95.58	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]
A0A6J1FCK1	3.0e-209	85.40	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita mo...	[more]
A0A6J1I7W1	6.7e-209	84.93	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita ma...	[more]

BLAST of CaUC10G194100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	1.6e-93	49.14	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	2.7e-69	42.15	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	4.7e-53	45.19	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	1.1e-22	27.17	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 392..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 428..452
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..451
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 143..215 e-value: 9.90307E-21 score: 83.897
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 144..216 e-value: 1.8E-16 score: 70.7
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 133..226 e-value: 8.5E-22 score: 78.7
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 139..222
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 166..214 e-value: 3.8E-11 score: 42.8
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 142..217 score: 20.837532
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G194100.1	CaUC10G194100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus