CaUC10G193870 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G193870
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Sigma factor binding protein 2
Location	Ciama_Chr10: 28791037 .. 28791465 (+)
RNA-Seq Expression	CaUC10G193870
Synteny	CaUC10G193870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACCGCGGCAACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCTATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGAATTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG

mRNA sequence

ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACCGCGGCAACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCTATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGAATTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG

Coding sequence (CDS)

ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACCGCGGCAACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCTATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGAATTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG

Protein sequence

MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

Homology

[Close]

BLAST of CaUC10G193870 vs. NCBI nr
Match: XP_008443611.1 (PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sigma factor binding protein 2 [Cucumis melo var. makuwa] >TYK25522.1 sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 7.3e-55
Identity = 121/144 (84.03%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRTLLVSELT-TTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQVLLLDSSCDDEFFRSSYESFE 120
           TGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ LL+DSSCDD+F+RSS+ES E
Sbjct: 61  TGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLE 120

Query: 121 DILRKDLMENLGAISTSLLNYPLV 143
           DILR+D+MEN GAISTSL+N PLV
Sbjct: 121 DILRRDVMENFGAISTSLIN-PLV 142

[Close]

BLAST of CaUC10G193870 vs. NCBI nr
Match: XP_011652185.1 (uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 122/148 (82.43%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQ 60
           MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQ
Sbjct: 1   MDRSLLVSEL---TTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQ 60

Query: 61  ELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDEFFRSSY 120
           ELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ LL+DSSCDD+F RSSY
Sbjct: 61  ELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSY 120

Query: 121 ESFEDILRKDLMENLGAISTSLLNYPLV 143
           ES EDILR+D+MEN GAISTSL N PLV
Sbjct: 121 ESLEDILRRDVMENFGAISTSLFN-PLV 144

[Close]

BLAST of CaUC10G193870 vs. NCBI nr
Match: KAE8651179.1 (hypothetical protein Csa_002123, partial [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-35
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 44  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVL 103
           MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ L
Sbjct: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60

Query: 104 LLDSSCDDEFFRSSYESFEDILRKDLMENLGAISTSLLN 139
           L+DSSCDD+F RSSYES EDILR+D+MEN GAISTSL N
Sbjct: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFN 99

[Close]

BLAST of CaUC10G193870 vs. NCBI nr
Match: XP_022147780.1 (sigma factor binding protein 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRNLIVSEM-----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ----VLLLDSSCDDEFFRSSYE 120
           TGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+    V       +D+F  S YE
Sbjct: 61  TGRDAEFPDPAKFHQASIDVGEMNLEKN--REGDDDEEASLDVATTMEDSNDDFLESPYE 120

Query: 121 SFEDIL-RKDLMENLGAISTSLLNYPLV 143
           SFE++L R+ LMEN    S S+ +  LV
Sbjct: 121 SFEEMLMREMLMENFAVPSRSVESSGLV 141

[Close]

BLAST of CaUC10G193870 vs. NCBI nr
Match: XP_023539403.1 (uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 65/139 (46.76%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           M+ SLV  +V       +K+  RKRK CD K QPLKVVYISNPMRV  SA+EFR LVQ+L
Sbjct: 1   MESSLVGRDVEEG----RKERRRKRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQQL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLL--------DSSCDDEFFRS 120
           TG+DA    PS    AS E      +K+  + ++D+Q LLL        DSS  D+F   
Sbjct: 61  TGQDAPKFPPS----ASVETPETNVRKIQDDDDDDDQQLLLHWAAAIMEDSS--DDFLGG 120

Query: 121 SYESFEDILRKDLMENLGA 132
           SYES E I  +D+++ L A
Sbjct: 121 SYESLEGIFMRDMVDRLAA 129

[Close]

BLAST of CaUC10G193870 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-08
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 8  SEVTAATTTT---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQ 67
          S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQ
Sbjct: 4  SSSTFLTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQ 63

Query: 68 ELTGRDAEFPDPSKFYPASCEIMN 83
          ELTG+DA    P   Y  S +  N
Sbjct: 64 ELTGQDAVDLQPEPIYSPSSDDHN 87

[Close]

BLAST of CaUC10G193870 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-07
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 1   MDRS---LVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALV 60
           MD+S   L++++  ++++ T+    +KRKS    K P+KV YISNPMRV T  S+FR LV
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELV 60

Query: 61  QELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDEFFRS 113
           QELTG+DA    PS     + ++    E ++  E  + E      S  D+E F +
Sbjct: 61  QELTGQDAADLPPSPTTFTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNA 114

[Close]

BLAST of CaUC10G193870 vs. ExPASy TrEMBL
Match: A0A5D3DPQ4 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006730 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.5e-55
Identity = 121/144 (84.03%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRTLLVSELT-TTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQVLLLDSSCDDEFFRSSYESFE 120
           TGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ LL+DSSCDD+F+RSS+ES E
Sbjct: 61  TGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLE 120

Query: 121 DILRKDLMENLGAISTSLLNYPLV 143
           DILR+D+MEN GAISTSL+N PLV
Sbjct: 121 DILRRDVMENFGAISTSLIN-PLV 142

[Close]

BLAST of CaUC10G193870 vs. ExPASy TrEMBL
Match: A0A1S3B8H6 (uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.5e-55
Identity = 121/144 (84.03%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRTLLVSELT-TTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQVLLLDSSCDDEFFRSSYESFE 120
           TGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ LL+DSSCDD+F+RSS+ES E
Sbjct: 61  TGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLE 120

Query: 121 DILRKDLMENLGAISTSLLNYPLV 143
           DILR+D+MEN GAISTSL+N PLV
Sbjct: 121 DILRRDVMENFGAISTSLIN-PLV 142

[Close]

BLAST of CaUC10G193870 vs. ExPASy TrEMBL
Match: A0A0A0LFH5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.2e-52
Identity = 122/148 (82.43%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQ 60
           MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQ
Sbjct: 1   MDRSLLVSEL---TTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQ 60

Query: 61  ELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDEFFRSSY 120
           ELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ LL+DSSCDD+F RSSY
Sbjct: 61  ELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSY 120

Query: 121 ESFEDILRKDLMENLGAISTSLLNYPLV 143
           ES EDILR+D+MEN GAISTSL N PLV
Sbjct: 121 ESLEDILRRDVMENFGAISTSLFN-PLV 144

[Close]

BLAST of CaUC10G193870 vs. ExPASy TrEMBL
Match: A0A6J1D137 (sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016633 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.3e-27
Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRNLIVSEM-----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ----VLLLDSSCDDEFFRSSYE 120
           TGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+    V       +D+F  S YE
Sbjct: 61  TGRDAEFPDPAKFHQASIDVGEMNLEKN--REGDDDEEASLDVATTMEDSNDDFLESPYE 120

Query: 121 SFEDIL-RKDLMENLGAISTSLLNYPLV 143
           SFE++L R+ LMEN    S S+ +  LV
Sbjct: 121 SFEEMLMREMLMENFAVPSRSVESSGLV 141

[Close]

BLAST of CaUC10G193870 vs. ExPASy TrEMBL
Match: A0A6J1FKR4 (uncharacterized protein LOC111446639 OS=Cucurbita moschata OX=3662 GN=LOC111446639 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 62/136 (45.59%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           M+ SLV  +V       +K+  R RK CD K QPLKVVYISNPMRV  SA+EFR LVQEL
Sbjct: 1   MESSLVGRDVEEG----RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMNDLEKKV--VAEGEEDEQVLLLDSSCDDE---FFRSSYE 120
           TG+DA    PS    AS   +   E  V  + + ++DEQ+LL  ++ +D    F   SYE
Sbjct: 61  TGQDAPKFPPS----ASSASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSSDGFLGGSYE 120

Query: 121 SFEDILRKDLMENLGA 132
           S E I  +D+++ L A
Sbjct: 121 SSEGIFMRDMVDKLAA 128

[Close]

BLAST of CaUC10G193870 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 8  SEVTAATTTT---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQ 67
          S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQ
Sbjct: 4  SSSTFLTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQ 63

Query: 68 ELTGRDAEFPDPSKFYPASCEIMN 83
          ELTG+DA    P   Y  S +  N
Sbjct: 64 ELTGQDAVDLQPEPIYSPSSDDHN 87

[Close]

BLAST of CaUC10G193870 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 1   MDRS---LVVSEVTAATTTTKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALV 60
           MD+S   L++++  ++++ T+    +KRKS    K P+KV YISNPMRV T  S+FR LV
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELV 60

Query: 61  QELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDEFFRS 113
           QELTG+DA    PS     + ++    E ++  E  + E      S  D+E F +
Sbjct: 61  QELTGQDAADLPPSPTTFTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNA 114

The following BLAST results are available for this feature:

BLAST of CaUC10G193870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443611.1	7.3e-55	84.03	PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sig...	[more]
XP_011652185.1	1.3e-51	82.43	uncharacterized protein LOC105434994 [Cucumis sativus]	[more]
KAE8651179.1	3.8e-35	84.85	hypothetical protein Csa_002123, partial [Cucumis sativus]	[more]
XP_022147780.1	1.1e-26	56.08	sigma factor binding protein 2, chloroplastic-like [Momordica charantia]	[more]
XP_023539403.1	1.8e-16	46.76	uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC10G193870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	6.9e-08	48.81	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	3.4e-07	37.39	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CaUC10G193870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ4	3.5e-55	84.03	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B8H6	3.5e-55	84.03	uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=...	[more]
A0A0A0LFH5	6.2e-52	82.43	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=...	[more]
A0A6J1D137	5.3e-27	56.08	sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=367...	[more]
A0A6J1FKR4	4.6e-15	45.59	uncharacterized protein LOC111446639 OS=Cucurbita moschata OX=3662 GN=LOC1114466...	[more]

BLAST of CaUC10G193870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	4.9e-09	48.81	sigma factor binding protein 1	[more]
AT2G41180.1	2.4e-08	37.39	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 6.9E-13 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 17..137
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 17..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G193870.1	CaUC10G193870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity