CaUC10G193810 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G193810
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE
Location	Ciama_Chr10: 28657916 .. 28658347 (+)
RNA-Seq Expression	CaUC10G193810
Synteny	CaUC10G193810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAACCATCGAGTGCGAAACGCTATTATTCAGACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGGTTTCTTCGGTAACATAAGATTAAATTGTAAGAAGAATCATACGGTTAATTCTTGTTTGATCTGCAAAATCTCGGTATCGTCTTTCTTTGGTCAGATCTTTTCGTCGACGATTGACATAGAAAGCAAGAGAACCCCATGATCAATATTTTGATGGTCAATTATTGCAGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTTCCTCCTCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTTCCCGTCGGATCCCCAACATTGCTGCTGAGGTGATGCAATAA

mRNA sequence

ATGGTGCAAACCATCGAGTGCGAAACGCTATTATTCAGACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTTCCTCCTCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTTCCCGTCGGATCCCCAACATTGCTGCTGAGGTGATGCAATAA

Coding sequence (CDS)

ATGGTGCAAACCATCGAGTGCGAAACGCTATTATTCAGACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTTCCTCCTCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTTCCCGTCGGATCCCCAACATTGCTGCTGAGGTGATGCAATAA

Protein sequence

MVQTIECETLLFRRFHSCRVLAGKSLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNIAAEVMQ

Homology

[Close]

BLAST of CaUC10G193810 vs. NCBI nr
Match: TQE05894.1 (hypothetical protein C1H46_008577 [Malus baccata])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 25 SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNIA 83
          S+ SVM L+V T  L++LPL++PPLPPPPL +L +PVLI+AVL+LLAFS   ++PN+A
Sbjct: 32 SIISVMFLIVLTVFLVVLPLLLPPLPPPPLVLLFIPVLIMAVLILLAFSHLSQVPNMA 89

[Close]

BLAST of CaUC10G193810 vs. NCBI nr
Match: XP_016457889.1 (PREDICTED: ARGOS-like protein [Nicotiana tabacum])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 12  FRRFHSCRVLAGK--------SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLI 71
           +RR  SC+   GK        SL S ++LL  TASLLLLPL++PPLPPPP  +L LP+LI
Sbjct: 51  YRRSLSCQAGNGKKVLSISYFSLESFLLLLCLTASLLLLPLILPPLPPPPFMLLLLPILI 110

Query: 72  LAVLLLLAFSSSRRIPNIA 83
           L +L+ LAF  S  + N++
Sbjct: 111 LLLLMFLAFMPSSNLRNVS 129

[Close]

BLAST of CaUC10G193810 vs. NCBI nr
Match: CAA3019299.1 (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea subsp. europaea])

HSP 1 Score: 57.4 bits (137), Expect = 7.2e-05
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 13  RRFHSCRVLAGKS---LSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLL 72
           R+  +CR  +G+    L S+ +L+  TASLL+LPL++PPLPPPPL +L LP+ ILA+L++
Sbjct: 51  RKSENCRSFSGQKTFRLESLFLLVCLTASLLILPLILPPLPPPPLMLLLLPICILALLMI 110

Query: 73  LAFSSS 76
           LAF SS
Sbjct: 111 LAFVSS 116

[Close]

BLAST of CaUC10G193810 vs. NCBI nr
Match: CAA2974752.1 (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea subsp. europaea])

HSP 1 Score: 57.4 bits (137), Expect = 7.2e-05
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 13  RRFHSCRVLAGKS---LSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLL 72
           R+  +CR  +G+    L S+ +L+  TASLL+LPL++PPLPPPPL +L LP+ ILA+L++
Sbjct: 51  RKSENCRSFSGQKTFRLESLFLLVCLTASLLILPLILPPLPPPPLMLLLLPICILALLMI 110

Query: 73  LAFSSS 76
           LAF SS
Sbjct: 111 LAFVSS 116

[Close]

BLAST of CaUC10G193810 vs. NCBI nr
Match: XP_009587748.2 (ARGOS-like protein, partial [Nicotiana tomentosiformis] >XP_016448111.1 PREDICTED: ARGOS-like protein, partial [Nicotiana tabacum])

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-05
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 12  FRRFHSCRVLAGK--SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLL 71
           F++ +S R+L+    SL SV++LL  TASLLLLPL++PPLPPPP  +L LP+ IL +L++
Sbjct: 65  FKQENSKRMLSMSYFSLESVLLLLCLTASLLLLPLILPPLPPPPFLLLLLPIFILLLLMI 124

Query: 72  LAFSSSRRIPNI 82
           LAF  +  + N+
Sbjct: 125 LAFMPNSNVRNV 136

[Close]

BLAST of CaUC10G193810 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 25  SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAF--SSSRRIPNIA 84
           SL S+++L+  TASLL+LPLV+PPLPPPP  +L +P+ I+ +L++LAF  SSS R  ++ 
Sbjct: 73  SLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPSSSSRAKDVT 132

Query: 85  AEVM 87
              M
Sbjct: 133 RTFM 136

[Close]

BLAST of CaUC10G193810 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-05
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 25  SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNIAA 84
           SL S++VL+  TASLL+LPL++PPLPPPP  +L +P+ I+ +L++LAF  S    ++++
Sbjct: 72  SLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPSSNSKHVSS 130

[Close]

BLAST of CaUC10G193810 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-04
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 25  SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSS 76
           SL S+ +L+  TASLL+LPLV+PPLPPPP  +L +P+ I+ +L++LAF  S
Sbjct: 66  SLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of CaUC10G193810 vs. ExPASy TrEMBL
Match: A0A540N4D3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008577 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 25 SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNIA 83
          S+ SVM L+V T  L++LPL++PPLPPPPL +L +PVLI+AVL+LLAFS   ++PN+A
Sbjct: 32 SIISVMFLIVLTVFLVVLPLLLPPLPPPPLVLLFIPVLIMAVLILLAFSHLSQVPNMA 89

[Close]

BLAST of CaUC10G193810 vs. ExPASy TrEMBL
Match: A0A1S3Z0B8 (ARGOS-like protein OS=Nicotiana tabacum OX=4097 GN=LOC107781668 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 12  FRRFHSCRVLAGK--------SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLI 71
           +RR  SC+   GK        SL S ++LL  TASLLLLPL++PPLPPPP  +L LP+LI
Sbjct: 51  YRRSLSCQAGNGKKVLSISYFSLESFLLLLCLTASLLLLPLILPPLPPPPFMLLLLPILI 110

Query: 72  LAVLLLLAFSSSRRIPNIA 83
           L +L+ LAF  S  + N++
Sbjct: 111 LLLLMFLAFMPSSNLRNVS 129

[Close]

BLAST of CaUC10G193810 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 34/57 (59.65%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 25  SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNI 82
           SL +V++++V T SLL+LP+V+PPLPPPPL +L +P+LI+AVL+LLAFS S ++PN+
Sbjct: 95  SLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPS-QLPNV 150

[Close]

BLAST of CaUC10G193810 vs. ExPASy TrEMBL
Match: A0A1S3Y783 (ARGOS-like protein OS=Nicotiana tabacum OX=4097 GN=LOC107773171 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-05
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 12  FRRFHSCRVLAGK--SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLL 71
           F++ +S R+L+    SL SV++LL  TASLLLLPL++PPLPPPP  +L LP+ IL +L++
Sbjct: 65  FKQENSKRMLSMSYFSLESVLLLLCLTASLLLLPLILPPLPPPPFLLLLLPIFILLLLMI 124

Query: 72  LAFSSSRRIPNI 82
           LAF  +  + N+
Sbjct: 125 LAFMPNSNVRNV 136

[Close]

BLAST of CaUC10G193810 vs. ExPASy TrEMBL
Match: M5VSM6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014424mg PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-05
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 25 SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNIAAE 84
          S+ SVM+L + T  L++LPLV+PPLPPPPL +L +PVLI+AVL+L+AFS   R+P   A 
Sbjct: 6  SIISVMILTILTVFLVVLPLVLPPLPPPPLVLLFVPVLIMAVLVLVAFSPLPRVPGQMAV 65

Query: 85 V 86
          V
Sbjct: 66 V 66

[Close]

BLAST of CaUC10G193810 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 47.8 bits (112), Expect = 5.3e-06
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 25  SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRRIPNIAA 84
           SL S++VL+  TASLL+LPL++PPLPPPP  +L +P+ I+ +L++LAF  S    ++++
Sbjct: 72  SLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPSSNSKHVSS 130

[Close]

BLAST of CaUC10G193810 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 25  SLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSS 76
           SL S+ +L+  TASLL+LPLV+PPLPPPP  +L +P+ I+ +L++LAF  S
Sbjct: 66  SLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of CaUC10G193810 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.2e-04
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 21 LAGKSL---SSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLILAVLLLLAFSSSRR 80
          L G SL    SV +LL  +  LL+LP  +PPLPPPP  +L LP+L++ +L+ LAFS S  
Sbjct: 19 LNGSSLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNE 78

Query: 81 IPNIAAE 85
           P++A E
Sbjct: 79 -PSLAVE 84

The following BLAST results are available for this feature:

BLAST of CaUC10G193810 vs. NCBI nr


Match Name	E-value	Identity	Description
TQE05894.1	1.1e-05	60.34	hypothetical protein C1H46_008577 [Malus baccata]	[more]
XP_016457889.1	2.5e-05	49.37	PREDICTED: ARGOS-like protein [Nicotiana tabacum]	[more]
CAA3019299.1	7.2e-05	53.03	AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea subsp. europaea]	[more]
CAA2974752.1	7.2e-05	53.03	AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea subsp. europaea]	[more]
XP_009587748.2	9.4e-05	50.00	ARGOS-like protein, partial [Nicotiana tomentosiformis] >XP_016448111.1 PREDICTE...	[more]

BLAST of CaUC10G193810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7SFP6	3.4e-05	50.00	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RXL7	7.5e-05	47.46	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q6NMD6	3.7e-04	54.90	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CaUC10G193810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540N4D3	5.4e-06	60.34	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008577 PE=4 SV=1	[more]
A0A1S3Z0B8	1.2e-05	49.37	ARGOS-like protein OS=Nicotiana tabacum OX=4097 GN=LOC107781668 PE=3 SV=1	[more]
A0A5B7AL58	1.6e-05	59.65	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A1S3Y783	4.6e-05	50.00	ARGOS-like protein OS=Nicotiana tabacum OX=4097 GN=LOC107773171 PE=3 SV=1	[more]
M5VSM6	4.6e-05	57.38	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014424mg PE=4 SV=1	[more]

BLAST of CaUC10G193810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	5.3e-06	47.46	ARGOS-like	[more]
AT3G59900.1	2.6e-05	54.90	auxin-regulated gene involved in organ size	[more]
AT2G41230.1	2.2e-04	47.76	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 25..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G193810.1	CaUC10G193810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus