CaUC10G193020 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G193020
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	transcription initiation factor TFIID subunit 15
Location	Ciama_Chr10: 27781607 .. 27782750 (+)
RNA-Seq Expression	CaUC10G193020
Synteny	CaUC10G193020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGTAAAGGAGCCCCCTCAAATGGGTCTATCTACATCTGCAACCTGCCTTATGGGACAGATGAGAATATGCTTGCTGAATATTTTGGGACAATTGGGGTATTAAAGGTTGGGAAATTTGCTTGCTCGTTTCTATGTGTATTTGCCTTTTGTTGTATTAGTACTAGTCTATCTCAAGATGCTTTACTTTCATTTTTTAATAGCTATTGCACTTTTCTTTTTGTCGTTTGTTTAATCTTCAAAGAGAGACAAGCGAACAGGTAGACCAAAGATTTGGTTGTATCGTGATAAATCAACGAATGAGCCTAAAGGAGATGCTACTGTAACATATGAGGATCCACATGCAGCATTAGCGGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGTATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATCTTTCATTTAATGTGGGGGTGGATCCAATTGTTGCTGCTGGTGATGATCTTGGTTTTGAGGAAAATGCTGCGGCTATGAACGGGGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGGAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGGTCTGTGATGTGATATTGGTGAGCAGCTCCTTCTTGCTTCTTTCAATTAATCAATCTCGGTTGTCTTCTAGCTTTTTCACTTATTGTTGTTTAAATGGGTTCTCATGCTTTATCCTACTGGCAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGTGCTGCTGGTAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGGCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTAAATATAATTTTCTTTTACTTATATGCCACCAGCATATTCTACTCTGCCTTAGGTTTACTCTTGTAGGAATGTATTACTTTTGCATTTCCTTTTCAGTAATGTCATCAATTGGTATGTTATGAATTAGAGTCAAATTTTGTAAAACCTACTAAATTCATTGATTTTTTTTTTTTTCAGTGAAAATATACAGATCAAAGTGGATAATATTTAG

mRNA sequence

ATGCGGAGAGACAAGCGAACAGGTAGACCAAAGATTTGGTTGTATCGTGATAAATCAACGAATGAGCCTAAAGGAGATGCTACTGTAACATATGAGGATCCACATGCAGCATTAGCGGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGTATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATCTTTCATTTAATGTGGGGGTGGATCCAATTGTTGCTGCTGGTGATGATCTTGGTTTTGAGGAAAATGCTGCGGCTATGAACGGGGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGGAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGTGCTGCTGGTAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGGCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATTGAAAATATACAGATCAAAGTGGATAATATTTAG

Coding sequence (CDS)

ATGCGGAGAGACAAGCGAACAGGTAGACCAAAGATTTGGTTGTATCGTGATAAATCAACGAATGAGCCTAAAGGAGATGCTACTGTAACATATGAGGATCCACATGCAGCATTAGCGGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGTATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATCTTTCATTTAATGTGGGGGTGGATCCAATTGTTGCTGCTGGTGATGATCTTGGTTTTGAGGAAAATGCTGCGGCTATGAACGGGGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGGAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGTGCTGCTGGTAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGGCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATTGAAAATATACAGATCAAAGTGGATAATATTTAG

Protein sequence

MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPIENIQIKVDNI

Homology

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BLAST of CaUC10G193020 vs. NCBI nr
Match: XP_038906136.1 (transcription initiation factor TFIID subunit 15 [Benincasa hispida] >XP_038906137.1 transcription initiation factor TFIID subunit 15 [Benincasa hispida])

HSP 1 Score: 375.9 bits (964), Expect = 2.1e-100
Identity = 181/189 (95.77%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAA AAVEWFNNKDFHGSIIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAAFAAVEWFNNKDFHGSIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SKSKDDLSFN GV+PIVAAGDDLGFEENAA MNGGGGRGRGRGDAPGKAWQQEGDWLCPN
Sbjct: 99  SKSKDDLSFNAGVEPIVAAGDDLGFEENAAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 227

[Close]

BLAST of CaUC10G193020 vs. NCBI nr
Match: XP_008443374.1 (PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis melo])

HSP 1 Score: 370.5 bits (950), Expect = 8.8e-99
Identity = 178/189 (94.18%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SK+KDD+SFNVGVDPIVAAGDD+G EE+ A MNGGGGRGRGRGDAPGKAWQQEGDWLCPN
Sbjct: 99  SKNKDDISFNVGVDPIVAAGDDIGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 227

[Close]

BLAST of CaUC10G193020 vs. NCBI nr
Match: KAA0053788.1 (transcription initiation factor TFIID subunit 15 [Cucumis melo var. makuwa] >TYK25613.1 transcription initiation factor TFIID subunit 15 [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.0e-98
Identity = 178/187 (95.19%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 3   RDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK 62
           +DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK
Sbjct: 38  KDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK 97

Query: 63  SKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTS 122
           +KDD+SFNVGVDPIVAAGDD+G EE+ A MNGGGGRGRGRGDAPGKAWQQEGDWLCPNTS
Sbjct: 98  NKDDISFNVGVDPIVAAGDDIGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTS 157

Query: 123 CSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGP 182
           CSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGP
Sbjct: 158 CSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGP 217

Query: 183 NDWPCPI 190
           NDWPCP+
Sbjct: 218 NDWPCPM 224

[Close]

BLAST of CaUC10G193020 vs. NCBI nr
Match: XP_011652224.1 (transcription initiation factor TFIID subunit 15 [Cucumis sativus] >XP_011652225.1 transcription initiation factor TFIID subunit 15 [Cucumis sativus] >KGN59538.1 hypothetical protein Csa_002612 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 9.7e-98
Identity = 178/189 (94.18%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SKSKDDLSFNV VDPIVAAGDD+G EE A  MNGGGGRGRGRGDAPGKAWQQEGDWLCPN
Sbjct: 99  SKSKDDLSFNVVVDPIVAAGDDIGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 227

[Close]

BLAST of CaUC10G193020 vs. NCBI nr
Match: XP_022934703.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita moschata] >XP_022934704.1 transcription initiation factor TFIID subunit 15-like [Cucurbita moschata] >XP_023526050.1 transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pepo] >XP_023526051.1 transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 2.8e-97
Identity = 178/189 (94.18%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHG+IIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SKSKDDLSFNVG DPIV  GDDLGFEENAA +NGGGGRGRGRGD PGKAWQQEGDWLCPN
Sbjct: 99  SKSKDDLSFNVGDDPIV-VGDDLGFEENAADVNGGGGRGRGRGDVPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 226

[Close]

BLAST of CaUC10G193020 vs. ExPASy Swiss-Prot
Match: Q9AST1 (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-61
Identity = 121/192 (63.02%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           ++RDKRTG PK+WLYRDK T+EPKGDATVTYEDPHAALAAVEWFNNKDFHG+ I V +AE
Sbjct: 34  LKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFMAE 93

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEE---NAAAMNGGGGRGRGRGDAPGKAWQQEGDWL 120
           SK+K+             AGD + F E    A   NGG GRGRG+ D+  K WQQ+GDW+
Sbjct: 94  SKNKN-------------AGDAVEFVEFDGGAEETNGGAGRGRGQADSSAKPWQQDGDWM 153

Query: 121 CPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPT 180
           CPNTSC+NVNFAFRGVCNRCG+ARP+GA+G   G+ GRGRGRG          +  G PT
Sbjct: 154 CPNTSCTNVNFAFRGVCNRCGTARPAGASGGSMGA-GRGRGRGGGADGGAPGKQPSGAPT 211

Query: 181 GLFGPNDWPCPI 190
           GLFGPNDW CP+
Sbjct: 214 GLFGPNDWACPM 211

[Close]

BLAST of CaUC10G193020 vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-24
Identity = 75/190 (39.47%), Postives = 101/190 (53.16%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           ++ +K+TG+P I LY DK T +PKG+ATV+++DP +A AA++WF+ K+FHG+II+V  A 
Sbjct: 260 IKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFAT 319

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRG--RGRGDAPGKAWQ-QEGDWL 120
            + +                    F     +  G  GRG  RGRG   G+    + GDW+
Sbjct: 320 RRPE--------------------FMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWV 379

Query: 121 CPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRG-------RGRGTSNQDSG--G 179
           CPN SC N+NFA R  CN+C   RP  +  SG    GRG       RGRG    D G  G
Sbjct: 380 CPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYG 429

[Close]

BLAST of CaUC10G193020 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-23
Identity = 80/217 (36.87%), Postives = 109/217 (50.23%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRT +PKIWLY++K T   KG+ATVTY+D +AA +A+EWF+ +DF+G+ I+V +A+
Sbjct: 146 IKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQ 205

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGF--EENAAAMNGGGGRGRGR---------------- 120
            ++    ++N G       G   GF          GGGG G GR                
Sbjct: 206 RQN----NWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGGGGGGRYDRGG 265

Query: 121 ----GDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRC--------GSARPSGAAGSGA 179
               G   G    ++GDW C   SC+N NFA+R  CNRC        GS+   G  G G 
Sbjct: 266 GGGGGGGGGNVQPRDGDWKC--NSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGG 325

[Close]

BLAST of CaUC10G193020 vs. ExPASy Swiss-Prot
Match: Q01844 (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 78/203 (38.42%), Postives = 98/203 (48.28%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           ++ +KRTG+P I +Y DK T +PKGDATV+YEDP  A AAVEWF+ KDF GS ++V +A 
Sbjct: 387 VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 446

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGG-------GGRGRGRGDAP------- 120
            K   + S   G+ P    G             G        GGRG  RG  P       
Sbjct: 447 KKPPMN-SMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGS 506

Query: 121 -------GKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGR 180
                  G    + GDW CPN  C N NFA+R  CN+C + +P G         G  RGR
Sbjct: 507 RGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGR 566

[Close]

BLAST of CaUC10G193020 vs. ExPASy Swiss-Prot
Match: Q61545 (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 78/203 (38.42%), Postives = 98/203 (48.28%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           ++ +KRTG+P I +Y DK T +PKGDATV+YEDP  A AAVEWF+ KDF GS ++V +A 
Sbjct: 386 VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 445

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGG-------GGRGRGRGDAP------- 120
            K   + S   G+ P    G             G        GGRG  RG  P       
Sbjct: 446 KKPPMN-SMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGS 505

Query: 121 -------GKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGR 180
                  G    + GDW CPN  C N NFA+R  CN+C + +P G         G  RGR
Sbjct: 506 RGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGR 565

[Close]

BLAST of CaUC10G193020 vs. ExPASy TrEMBL
Match: A0A1S3B7U8 (transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC103486976 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.3e-99
Identity = 178/189 (94.18%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SK+KDD+SFNVGVDPIVAAGDD+G EE+ A MNGGGGRGRGRGDAPGKAWQQEGDWLCPN
Sbjct: 99  SKNKDDISFNVGVDPIVAAGDDIGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 227

[Close]

BLAST of CaUC10G193020 vs. ExPASy TrEMBL
Match: A0A5A7UFC0 (Transcription initiation factor TFIID subunit 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007720 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.5e-99
Identity = 178/187 (95.19%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 3   RDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK 62
           +DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK
Sbjct: 38  KDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK 97

Query: 63  SKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTS 122
           +KDD+SFNVGVDPIVAAGDD+G EE+ A MNGGGGRGRGRGDAPGKAWQQEGDWLCPNTS
Sbjct: 98  NKDDISFNVGVDPIVAAGDDIGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTS 157

Query: 123 CSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGP 182
           CSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGP
Sbjct: 158 CSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGP 217

Query: 183 NDWPCPI 190
           NDWPCP+
Sbjct: 218 NDWPCPM 224

[Close]

BLAST of CaUC10G193020 vs. ExPASy TrEMBL
Match: A0A0A0LCQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824830 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.7e-98
Identity = 178/189 (94.18%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SKSKDDLSFNV VDPIVAAGDD+G EE A  MNGGGGRGRGRGDAPGKAWQQEGDWLCPN
Sbjct: 99  SKSKDDLSFNVVVDPIVAAGDDIGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 227

[Close]

BLAST of CaUC10G193020 vs. ExPASy TrEMBL
Match: A0A6J1F8E5 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3662 GN=LOC111441809 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 178/189 (94.18%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHG+IIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SKSKDDLSFNVG DPIV  GDDLGFEENAA +NGGGGRGRGRGD PGKAWQQEGDWLCPN
Sbjct: 99  SKSKDDLSFNVGDDPIV-VGDDLGFEENAADVNGGGGRGRGRGDVPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 226

[Close]

BLAST of CaUC10G193020 vs. ExPASy TrEMBL
Match: A0A6J1J0B4 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=3661 GN=LOC111482305 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.6e-96
Identity = 175/189 (92.59%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           +++DKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHG+IIEVHIAE
Sbjct: 39  LKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAE 98

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEENAAAMNGGGGRGRGRGDAPGKAWQQEGDWLCPN 120
           SKSKDDLSFNVG DPIV  GDDLGFEENAA +NGGGGRGRGRGD PGKAWQQEGDWLCPN
Sbjct: 99  SKSKDDLSFNVGDDPIV-VGDDLGFEENAADVNGGGGRGRGRGDVPGKAWQQEGDWLCPN 158

Query: 121 TSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLF 180
           TSCSNVNFAFRGVCNRCGSARPSG+AGSGAGSIGRGRGRGT NQDSGGN RQVGGPTGLF
Sbjct: 159 TSCSNVNFAFRGVCNRCGSARPSGSAGSGAGSIGRGRGRGTGNQDSGGNGRQVGGPTGLF 218

Query: 181 GPNDWPCPI 190
           GPNDWPCP+
Sbjct: 219 GPNDWPCPM 226

[Close]

BLAST of CaUC10G193020 vs. TAIR 10
Match: AT1G50300.1 (TBP-associated factor 15 )

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-62
Identity = 121/192 (63.02%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 1   MRRDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAE 60
           ++RDKRTG PK+WLYRDK T+EPKGDATVTYEDPHAALAAVEWFNNKDFHG+ I V +AE
Sbjct: 34  LKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFMAE 93

Query: 61  SKSKDDLSFNVGVDPIVAAGDDLGFEE---NAAAMNGGGGRGRGRGDAPGKAWQQEGDWL 120
           SK+K+             AGD + F E    A   NGG GRGRG+ D+  K WQQ+GDW+
Sbjct: 94  SKNKN-------------AGDAVEFVEFDGGAEETNGGAGRGRGQADSSAKPWQQDGDWM 153

Query: 121 CPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPT 180
           CPNTSC+NVNFAFRGVCNRCG+ARP+GA+G   G+ GRGRGRG          +  G PT
Sbjct: 154 CPNTSCTNVNFAFRGVCNRCGTARPAGASGGSMGA-GRGRGRGGGADGGAPGKQPSGAPT 211

Query: 181 GLFGPNDWPCPI 190
           GLFGPNDW CP+
Sbjct: 214 GLFGPNDWACPM 211

[Close]

BLAST of CaUC10G193020 vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 94  GGGGRGRGRGDAPGK---AWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGA 153
           GGGG G   GD  G+      ++GDW CPN SC NVNFA R  CN+CG+  PSG +    
Sbjct: 63  GGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGAN 122

Query: 154 GSIGRGRGRGTSNQDSGG 169
              G G  RG  + D GG
Sbjct: 123 DRGGGGYSRGGGDSDRGG 140

[Close]

BLAST of CaUC10G193020 vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 94  GGGGRGRGRGDAPGK---AWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGA 153
           GGGG G   GD  G+      ++GDW CPN SC NVNFA R  CN+CG+  PSG +    
Sbjct: 63  GGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGAN 122

Query: 154 GSIGRGRGRGTSNQDSGG 169
              G G  RG  + D GG
Sbjct: 123 DRGGGGYSRGGGDSDRGG 140

The following BLAST results are available for this feature:

BLAST of CaUC10G193020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906136.1	2.1e-100	95.77	transcription initiation factor TFIID subunit 15 [Benincasa hispida] >XP_0389061...	[more]
XP_008443374.1	8.8e-99	94.18	PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis melo]	[more]
KAA0053788.1	2.0e-98	95.19	transcription initiation factor TFIID subunit 15 [Cucumis melo var. makuwa] >TYK...	[more]
XP_011652224.1	9.7e-98	94.18	transcription initiation factor TFIID subunit 15 [Cucumis sativus] >XP_011652225...	[more]
XP_022934703.1	2.8e-97	94.18	transcription initiation factor TFIID subunit 15-like [Cucurbita moschata] >XP_0...	[more]

BLAST of CaUC10G193020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST1	2.6e-61	63.02	Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702...	[more]
Q92804	4.3e-24	39.47	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]
Q27294	3.7e-23	36.87	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
Q01844	1.1e-22	38.42	RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1	[more]
Q61545	1.1e-22	38.42	RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2	[more]

BLAST of CaUC10G193020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7U8	4.3e-99	94.18	transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UFC0	9.5e-99	95.19	Transcription initiation factor TFIID subunit 15 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LCQ7	4.7e-98	94.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824830 PE=4 SV=1	[more]
A0A6J1F8E5	1.4e-97	94.18	transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1J0B4	2.6e-96	92.59	transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=366...	[more]

BLAST of CaUC10G193020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50300.1	1.8e-62	63.02	TBP-associated factor 15	[more]
AT5G58470.1	2.0e-08	46.15	TBP-associated factor 15B	[more]
AT5G58470.2	2.0e-08	46.15	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 114..140 e-value: 6.1E-5 score: 32.4
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 113..143 e-value: 2.5E-7 score: 29.9
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 116..137
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 112..143 score: 9.969523
None	No IPR available	GENE3D	4.10.1060.10		coord: 110..145 e-value: 2.5E-13 score: 51.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..173
None	No IPR available	PANTHER	PTHR23238:SF29	OS09G0299500 PROTEIN	coord: 2..193
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..59 e-value: 8.4E-12 score: 47.2
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 2..193
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 107..144
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G193020.1	CaUC10G193020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding