CaUC10G192850 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G192850
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Location	Ciama_Chr10: 27530021 .. 27531859 (+)
RNA-Seq Expression	CaUC10G192850
Synteny	CaUC10G192850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGCTGGGCACCTTGTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAGATCTGCACCTAAATCTGCAACTCAAACATTCAAAATCAAGGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAACACCTTCTCCTTTTCATCTTTCAGATTTCTGCAGACTTCCATTTTCAAACACTCTTCCCTCTTCTATCTATCTAAACAGTTTTATCTTTCCACAGTTCCCTATTTGATGATGGAAAGAAAAACTTGGCTTGGTCTTTCTAATTTCTGGCTTCTACTTTTTTGCTATACTATCAATGTCTCTAGAAAGTATAGTTCTTCATACAGTTCCTTTCCATCTCAAGATTTTTTTGTTCTAATGAAGAGAAGAAGCAACAAAACGTCAAGACGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCGAGACCTTAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGGTAATTTCAATACTTTTTCCCCCTCAAAAATCTATTTTATGTATAACATTTAATGAACACAACTTCGATCCAACTCCAACATTTAACAATGGATCCATCTCCATTAACATCTCGGAGAGAACTATTGTTGGAGAGGCCGAGAGGGATAGAGAAACTTTTTTTAGAGAACGAGACTTTTGTTTAGAGAGATGAGTGTATTGGAGAGAGAAAAAGGACTGTTGTATAATAAGGAATGTGGTAAAGAGAATCTTCTCTCTTTTTGTTTTTTGTTTAGGAGCATGCTTGCTGAAGAGTCCATTTCTCAGCTCAAAGAGAATAGATATTGAACAATCCTTTTTGAAGCTATTTAAAGAATTCAAGCATATCTACACAAAATGATCTATCAGATTACTAGAATACTAACTTTCCCTTTGTTAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAAGATCAACACATCATTCACTCGAAAGTGCTGTACCTGTTCTTTGCCATACTGCAGAGAGGTAGCACTGTTTAAACAACCAAACAAATGATAATATCACATAACGTATAATTCTACTTCCACAACTGTATTTACTTGTGCAATTGAAAAATTTGAGGGTGCAATTATTAGATTCGTAAGTATGATAAACTTTCACAATTTCCTTGTCATCTTTATCTCGTCTATCGAAGAGGTATGAATTCAGCAACATTCCAACCAAAGTTCTAACACATACAATTATCTTAATCAAACAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAACCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGATGATCCATCGGTGAGTTTCTGAAGTTTTTGCATTTCTTACTTCAATCACTAAGAACTGACACCCTTCTTAAACTTAACAGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTAACACCTCAATCAAGGTGAGAAGTTGAATGCAAATAGAATTGAGCTAGTTATGAATAACCATTATATCTAACTACTACCAAGATTCAATTAGAAGAAGTTAACAAACAGCATACCTCTTCCAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTCAAGCTTCCACTTGCAATCAATGTTGGGACTAATTGAGATATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG

mRNA sequence

ATGGCAGAAGCTGGGCACCTTGTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAGATCTGCACCTAAATCTGCAACTCAAACATTCAAAATCAAGGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAACACCTTCTCCTTTTCATCTTTCAGATTTCTGCAGACTTCCATTTTCAAACACTCTTCCCTCTTCTATCTATCTAAACAGTTTTATCTTTCCACAGTTCCCTATTTGATGATGGAAAGAAAAACTTGGCTTGGTCTTTCTAATTTCTGGCTTCTACTTTTTTGCTATACTATCAATGTCTCTAGAAAGTATAGTTCTTCATACAGTTCCTTTCCATCTCAAGATTTTTTTGTTCTAATGAAGAGAAGAAGCAACAAAACGTCAAGACGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCGAGACCTTAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAAGATCAACACATCATTCACTCGAAAGTGCTGTACCTGTTCTTTGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAACCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGATGATCCATCGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTAACACCTCAATCAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG

Coding sequence (CDS)

ATGGCAGAAGCTGGGCACCTTGTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAGATCTGCACCTAAATCTGCAACTCAAACATTCAAAATCAAGGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAACACCTTCTCCTTTTCATCTTTCAGATTTCTGCAGACTTCCATTTTCAAACACTCTTCCCTCTTCTATCTATCTAAACAGTTTTATCTTTCCACAGTTCCCTATTTGATGATGGAAAGAAAAACTTGGCTTGGTCTTTCTAATTTCTGGCTTCTACTTTTTTGCTATACTATCAATGTCTCTAGAAAGTATAGTTCTTCATACAGTTCCTTTCCATCTCAAGATTTTTTTGTTCTAATGAAGAGAAGAAGCAACAAAACGTCAAGACGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCGAGACCTTAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAAGATCAACACATCATTCACTCGAAAGTGCTGTACCTGTTCTTTGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAACCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGATGATCCATCGGTGATCTACGTTAAACCTGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTAACACCTCAATCAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG

Protein sequence

MAEAGHLVTARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQTSIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPSQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA

Homology

[Close]

BLAST of CaUC10G192850 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 395.2 bits (1014), Expect = 5.2e-106
Identity = 218/313 (69.65%), Postives = 220/313 (70.29%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAE GHLVTARNINSISSSFN+ +APK ATQTFKI ASSKRNDISL              
Sbjct: 1   MAETGHLVTARNINSISSSFNKAAAPKYATQTFKITASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRSNKTSRRLITISTSGSRWQGKWT DYLLSLRDLNLEDLVEDEHKNA VFI
Sbjct: 121 --------RRSNKTSRRLITISTSGSRWQGKWTSDYLLSLRDLNLEDLVEDEHKNARVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDGKINTSFTRKCCTCS PYCREINANFNVLVLSSNRTNREIHLPDI
Sbjct: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRTNREIHLPDI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDS VRDTIRL TS KDTCSELCEKSQPTVQYIGAQN ASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSFVRDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNGASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RWSRLLELRKSNA
Sbjct: 301 RWSRLLELRKSNA 231

[Close]

BLAST of CaUC10G192850 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.2e-105
Identity = 214/313 (68.37%), Postives = 223/313 (71.25%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV TARNINSISSSFN++APK +TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                    RSNKT+RRLITIST+GSRWQGKWTCDYLLSLRDLNLEDLVEDE+KNAHVFI
Sbjct: 121 ---------RSNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDG+INTSFTRKCC CS PYCREINANFNVLVLSSNR NREIHLPDI
Sbjct: 181 NLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDI 230

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE+CEKSQPTVQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDK 230

Query: 301 RWSRLLELRKSNA 313
           RWSRLLELRKSN+
Sbjct: 301 RWSRLLELRKSNS 230

[Close]

BLAST of CaUC10G192850 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.9 bits (1008), Expect = 2.6e-105
Identity = 216/313 (69.01%), Postives = 219/313 (69.97%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAG LV T RNINSISSSFN+ APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRSNKT+RRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI
Sbjct: 121 --------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDG+INTSFTRKCCTCSLPYCREI ANFNVLVLSSNR NREIHLPDI
Sbjct: 181 NLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE CEKSQPTVQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RW RLLELRKS A
Sbjct: 301 RWFRLLELRKSKA 231

[Close]

BLAST of CaUC10G192850 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 3.7e-104
Identity = 211/313 (67.41%), Postives = 223/313 (71.25%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV TARNINSISS+FN++APKS+TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRSNKT+RRLITIST+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFI
Sbjct: 121 --------RRSNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDG+INTSFTRKCC CS PYCREINANFNVLVLSSNR NREIHLPDI
Sbjct: 181 NLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE+CEKSQPTVQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RWSRLLELRKSN+
Sbjct: 301 RWSRLLELRKSNS 231

[Close]

BLAST of CaUC10G192850 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 373.6 bits (958), Expect = 1.6e-99
Identity = 205/313 (65.50%), Postives = 216/313 (69.01%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV A N+NSISSSFN+ +APK ATQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRS+K  RRLITIST+GS WQGKW+CDYLLSL+D NLEDLVEDEHKNAHVFI
Sbjct: 121 --------RRSSKPPRRLITISTAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDGKINTSFTRKCCTCS PYCREINANFNVLVLSSNR  RE  LP+I
Sbjct: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSELCEKSQP+VQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RWSRLLELRKS++
Sbjct: 301 RWSRLLELRKSHS 231

[Close]

BLAST of CaUC10G192850 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.3e-56
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 130 SNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 189
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 190 GFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYV 249
           G +VDG+I TS  RKC  CS  Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 250 KPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 309
           +PG EA+LDSLV+DTIRL T  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of CaUC10G192850 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 7.1e-109
Identity = 225/316 (71.20%), Postives = 240/316 (75.95%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV TARNINSISSSFN++APK +TQTFKIKASSKRNDISLV             
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLV------------- 60

Query: 61  SIFKHSSL---FYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSS 120
              KH+ L   F +S     S   +L            F L++F            S+SS
Sbjct: 61  ---KHNLLLVIFQISADIPSSIHTFL------------FHLMIF------------SFSS 120

Query: 121 FPSQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAH 180
                         NKT+RRLITIST+GSRWQGKWTCDYLLSLRDLNLEDLVEDE+ NAH
Sbjct: 121 LNEAQI-------RNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDENNNAH 180

Query: 181 VFINLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHL 240
           VFINLCIEKHASFGFTVDG+INTSFTRKCC CS PYCREINANFNVLVLSSNR NREIHL
Sbjct: 181 VFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHL 240

Query: 241 PDIGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAAS 300
           PDIGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE+CEKSQPTVQYIGAQNAAS
Sbjct: 241 PDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAAS 269

Query: 301 IDKRWSRLLELRKSNA 313
           IDKRWSRLLELRKSN+
Sbjct: 301 IDKRWSRLLELRKSNS 269

[Close]

BLAST of CaUC10G192850 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.3e-105
Identity = 216/313 (69.01%), Postives = 219/313 (69.97%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAG LV T RNINSISSSFN+ APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRSNKT+RRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI
Sbjct: 121 --------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDG+INTSFTRKCCTCSLPYCREI ANFNVLVLSSNR NREIHLPDI
Sbjct: 181 NLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE CEKSQPTVQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RW RLLELRKS A
Sbjct: 301 RWFRLLELRKSKA 231

[Close]

BLAST of CaUC10G192850 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.3e-105
Identity = 216/313 (69.01%), Postives = 219/313 (69.97%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAG LV T RNINSISSSFN+ APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRSNKT+RRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI
Sbjct: 121 --------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDG+INTSFTRKCCTCSLPYCREI ANFNVLVLSSNR NREIHLPDI
Sbjct: 181 NLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE CEKSQPTVQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RW RLLELRKS A
Sbjct: 301 RWFRLLELRKSKA 231

[Close]

BLAST of CaUC10G192850 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 7.9e-100
Identity = 205/313 (65.50%), Postives = 216/313 (69.01%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV A N+NSISSSFN+ +APK ATQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRS+K  RRLITIST+GS WQGKW+CDYLLSL+D NLEDLVEDEHKNAHVFI
Sbjct: 121 --------RRSSKPPRRLITISTAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDGKINTSFTRKCCTCS PYCREINANFNVLVLSSNR  RE  LP+I
Sbjct: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSELCEKSQP+VQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RWSRLLELRKS++
Sbjct: 301 RWSRLLELRKSHS 231

[Close]

BLAST of CaUC10G192850 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 7.4e-98
Identity = 202/313 (64.54%), Postives = 213/313 (68.05%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV A N+NSISSSFN+ +A K ATQ FKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLFCYTINVSRKYSSSYSSFPS 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 QDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFI 180
                   RRS+K  RRLITIST+GS WQG+W+CDYLLSL+D NLEDLVEDEHKNAHVFI
Sbjct: 121 --------RRSSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFI 180

Query: 181 NLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDI 240
           NLCIEKHASFGFTVDGKINTSF RKCCTCS PYCREINANFNVLVLSSNR  RE  LPDI
Sbjct: 181 NLCIEKHASFGFTVDGKINTSFIRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPDI 231

Query: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDK 300
           GGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSELCEKSQP+VQYIGAQNAASIDK
Sbjct: 241 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDK 231

Query: 301 RWSRLLELRKSNA 313
           RWSRLLELRKS++
Sbjct: 301 RWSRLLELRKSHS 231

[Close]

BLAST of CaUC10G192850 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-57
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 130 SNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 189
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 190 GFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYV 249
           G +VDG+I TS  RKC  CS  Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 250 KPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 309
           +PG EA+LDSLV+DTIRL T  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of CaUC10G192850 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-57
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 130 SNKTSRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 189
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 105

Query: 190 GFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYV 249
           G +VDG+I TS  RKC  CS  Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 106 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 165

Query: 250 KPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 309
           +PG EA+LDSLV+DTIRL T  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 166 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 225

The following BLAST results are available for this feature:

BLAST of CaUC10G192850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906104.1	5.2e-106	69.65	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_031738565.1	1.2e-105	68.37	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_008461873.1	2.6e-105	69.01	PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF...	[more]
XP_011651803.2	3.7e-104	67.41	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_022983270.1	1.6e-99	65.50	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CaUC10G192850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	2.3e-56	58.89	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of CaUC10G192850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9P4	7.1e-109	71.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1	[more]
A0A5D3C1F8	1.3e-105	69.01	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	1.3e-105	69.01	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]
A0A6J1J5E3	7.9e-100	65.50	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F8T8	7.4e-98	64.54	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CaUC10G192850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	1.6e-57	58.89	Protein of unknown function (DUF177)	[more]
AT3G19800.2	1.6e-57	58.89	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 193..307 e-value: 2.8E-12 score: 46.8
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G192850.1	CaUC10G192850.1	mRNA