CaUC10G190980 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G190980
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr10: 25096420 .. 25096778 (-)
RNA-Seq Expression	CaUC10G190980
Synteny	CaUC10G190980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAGTAACATTTCTCTCATTGTTATCTGCTTGTAGCCACGCCAGTTTAATTTAAGAAGGGATGAAGATATTCAACATGATGTTGCATGAATACAGAATAAAACCCAACACAGAGCATTGTCATCAATGTCAATCTTCTTGGTCGAACAGGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGCTTACAAGGAAATTTGAGAGATGAA

mRNA sequence

ATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAAATAAAACCCAACACAGAGCATTGTCATCAATGTCAATCTTCTTGGTCGAACAGGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGCTTACAAGGAAATTTGAGAGATGAA

Coding sequence (CDS)

ATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGAAGTTATGCCCAACGAAAATAAAACCCAACACAGAGCATTGTCATCAATGTCAATCTTCTTGGTCGAACAGGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTCATAGCTTACAAGGAAATTTGAGAGATGAA

Protein sequence

MAGYGIPGQGREDLKLFDKMIETSEVMPNENKTQHRALSSMSIFLVEQENSTGQSVIEAGTEVHSSVTDDRLHPESDHIHSLQGNLRDE

Homology

[Close]

BLAST of CaUC10G190980 vs. NCBI nr
Match: XP_008464928.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo] >KAA0057245.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK18716.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 485 IAGYGIQGQGREALKLFNKMIETSEVMPNE 514

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BLAST of CaUC10G190980 vs. NCBI nr
Match: KGN59830.2 (hypothetical protein Csa_001071 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 323 IAGYGIQGQGREALKLFNKMIETSEVMPNE 352

[Close]

BLAST of CaUC10G190980 vs. NCBI nr
Match: XP_011652303.1 (putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 485 IAGYGIQGQGREALKLFNKMIETSEVMPNE 514

[Close]

BLAST of CaUC10G190980 vs. NCBI nr
Match: XP_038905362.1 (putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 53  GQSVIEAGTEVHSSVTDDRLHPESDHIHSLQGNL 87
           GQSVIEAG+EVHS V DDRLHPESDHI+ L  NL
Sbjct: 650 GQSVIEAGSEVHSFVADDRLHPESDHIYRLLRNL 683

[Close]

BLAST of CaUC10G190980 vs. NCBI nr
Match: XP_038905362.1 (putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETS+VMPNE
Sbjct: 483 IAGYGIQGQGREALKLFNKMIETSKVMPNE 512

[Close]

BLAST of CaUC10G190980 vs. ExPASy TrEMBL
Match: A0A5A7UUL5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00170 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 485 IAGYGIQGQGREALKLFNKMIETSEVMPNE 514

[Close]

BLAST of CaUC10G190980 vs. ExPASy TrEMBL
Match: A0A0A0LFK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G840360 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 391 IAGYGIQGQGREALKLFNKMIETSEVMPNE 420

[Close]

BLAST of CaUC10G190980 vs. ExPASy TrEMBL
Match: A0A1S3CMP5 (putative pentatricopeptide repeat-containing protein At3g01580 OS=Cucumis melo OX=3656 GN=LOC103502681 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MAGYGIPGQGREDLKLFDKMIETSEVMPNE 31
           +AGYGI GQGRE LKLF+KMIETSEVMPNE
Sbjct: 485 IAGYGIQGQGREALKLFNKMIETSEVMPNE 514

The following BLAST results are available for this feature:

BLAST of CaUC10G190980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464928.1	1.6e-04	86.67	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum...	[more]
KGN59830.2	1.6e-04	86.67	hypothetical protein Csa_001071 [Cucumis sativus]	[more]
XP_011652303.1	1.6e-04	86.67	putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus]	[more]
XP_038905362.1	2.8e-04	79.41	putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispid...	[more]
XP_038905362.1	4.8e-04	83.33	putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispid...	[more]

BLAST of CaUC10G190980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC10G190980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUL5	8.0e-05	86.67	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A0A0LFK2	8.0e-05	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G840360 PE=4 SV=1	[more]
A0A1S3CMP5	8.0e-05	86.67	putative pentatricopeptide repeat-containing protein At3g01580 OS=Cucumis melo O...	[more]

BLAST of CaUC10G190980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G190980.1	CaUC10G190980.1	mRNA