CaUC10G190720 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G190720
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DEAD-box ATP-dependent RNA helicase 46
Location	Ciama_Chr10: 24820541 .. 24821620 (+)
RNA-Seq Expression	CaUC10G190720
Synteny	CaUC10G190720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTACTGCTACTGCTGTATCTGTTGGACCACGATATGCACCAGAGGATCCAACCCTTCCCAAACCATGGAGAGGTTTAGTTGATGGAAAAACAGGGTATCTTTACTTTTGGAATCCGGAAACTAATGTCACCCAATACGAGAGACCTGTGGCTGCTGCTCCTCTTAATTCATCAATAGTGTCCATAAGTTCTTCCGTTCAAATTCAAAAGCCATCCTCAGGCCACTCTTATAGTAATAATTTGAATGAAAATAATGATAAGTACGGAAGAGGTTCCCATGCACCCAAACACGAGGTAGAGTCGAAGTATACAAATAGTAATTCTCTTTTTCTATTACAAAGGGTAACACGTTCTATACATTGTATCAACCCTGTGGAATGTTGAAATTTTAACTTTTGGAATGTTCTTCCTCGATTCTTCTGCTACTGAAACTTTTTTAGGCCTCTAGTGTCAACCCTTCTTATATTATTGTTTTTACATTTTCCTCCTTGGGCTTCCTTCTTTTGGAATCAAATGAAAATTCTTTGGGAAATTATTCTTACGTGCTTTAGACTTTTTATGTGGTGTTTAACTTTTGTTTGTTTGTTTTTGCTTTAGAACGAGAGAGAATTACAATAATTGGTTTTACTTCTGTATTCTGATTCCAACTGGCACGCAAGTGCCCTTGGAATATTATGTATGGTTTAATATTGATTATCTAAAAATTTAATTGGAGTTTATAAATTTAAATGAAAATTTTTGGTGAACTCATTTCCCAGAGCGAGTTTGGATGCCATTTTGCCTCATAATATAGAACAACTTCAGGAATTTTGGTAAAACCTATGAGATGTAAATAATGAAATTATGTACTCAATGATATATGATTAGTGTGACCCAATCTTACTTCAGGCTTCAAGGGGTGAAACCTTTCAATCACATGATACCTCAAATGGAACACCTAGTACAGGGCATGGAGGAGCACCGTTGAAAGGACACAGACCATCAGATGCAGGAAGTGGTTTATCTGCCGAGTCTTATCGTCAACGACATGAAATAACCTTTTCGGTGAGTGCACTGCTAGTTTTGGGTTGCTAG

mRNA sequence

ATGGCGGCTACTGCTACTGCTGTATCTGTTGGACCACGATATGCACCAGAGGATCCAACCCTTCCCAAACCATGGAGAGGTTTAGTTGATGGAAAAACAGGGTATCTTTACTTTTGGAATCCGGAAACTAATGTCACCCAATACGAGAGACCTGTGGCTGCTGCTCCTCTTAATTCATCAATAGTGTCCATAAGTTCTTCCGTTCAAATTCAAAAGCCATCCTCAGGCCACTCTTATAGTAATAATTTGAATGAAAATAATGATAAAACGAGAGAGAATTACAATAATTGGTTTTACTTCTGTATTCTGATTCCAACTGGCACGCAAGTGCCCTTGGAATATTATTGTGACCCAATCTTACTTCAGGCTTCAAGGGGTGAAACCTTTCAATCACATGATACCTCAAATGGAACACCTAGTACAGGGCATGGAGGAGCACCGTTGAAAGGACACAGACCATCAGATGCAGGAAGTGGTTTATCTGCCGAGTCTTATCGTCAACGACATGAAATAACCTTTTCGGTGAGTGCACTGCTAGTTTTGGGTTGCTAG

Coding sequence (CDS)

ATGGCGGCTACTGCTACTGCTGTATCTGTTGGACCACGATATGCACCAGAGGATCCAACCCTTCCCAAACCATGGAGAGGTTTAGTTGATGGAAAAACAGGGTATCTTTACTTTTGGAATCCGGAAACTAATGTCACCCAATACGAGAGACCTGTGGCTGCTGCTCCTCTTAATTCATCAATAGTGTCCATAAGTTCTTCCGTTCAAATTCAAAAGCCATCCTCAGGCCACTCTTATAGTAATAATTTGAATGAAAATAATGATAAAACGAGAGAGAATTACAATAATTGGTTTTACTTCTGTATTCTGATTCCAACTGGCACGCAAGTGCCCTTGGAATATTATTGTGACCCAATCTTACTTCAGGCTTCAAGGGGTGAAACCTTTCAATCACATGATACCTCAAATGGAACACCTAGTACAGGGCATGGAGGAGCACCGTTGAAAGGACACAGACCATCAGATGCAGGAAGTGGTTTATCTGCCGAGTCTTATCGTCAACGACATGAAATAACCTTTTCGGTGAGTGCACTGCTAGTTTTGGGTTGCTAG

Protein sequence

MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPILLQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFSVSALLVLGC

Homology

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BLAST of CaUC10G190720 vs. NCBI nr
Match: XP_011652287.1 (DEAD-box ATP-dependent RNA helicase 46 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 137/174 (78.74%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSNGTP+TGHGGAPLKGHRPSDAG+G+SAESYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFS 152

[Close]

BLAST of CaUC10G190720 vs. NCBI nr
Match: KAE8651258.1 (hypothetical protein Csa_002550 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 137/174 (78.74%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 163

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSNGTP+TGHGGAPLKGHRPSDAG+G+SAESYRQRHEITFS
Sbjct: 164 -EVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFS 195

[Close]

BLAST of CaUC10G190720 vs. NCBI nr
Match: XP_038903376.1 (DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903378.1 DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903379.1 DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903380.1 DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida])

HSP 1 Score: 261.2 bits (666), Expect = 6.9e-66
Identity = 136/174 (78.16%), Postives = 143/174 (82.18%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQI+KPSSGHSYSNNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIEKPSSGHSYSNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHD+SNGTPSTGHG A LKGHRPSDAG+GLSAESYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDSSNGTPSTGHGRATLKGHRPSDAGNGLSAESYRQRHEITFS 152

[Close]

BLAST of CaUC10G190720 vs. NCBI nr
Match: KAA0053652.1 (DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 137/177 (77.40%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSN---GTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSN   G PSTGHGGAPLKGH+PSDAGSGLSA+SYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTSNGIHGAPSTGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFS 155

[Close]

BLAST of CaUC10G190720 vs. NCBI nr
Match: XP_008443543.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo] >TYK00823.1 DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 137/177 (77.40%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSN---GTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSN   G PSTGHGGAPLKGH+PSDAGSGLSA+SYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTSNGIHGAPSTGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFS 155

[Close]

BLAST of CaUC10G190720 vs. ExPASy Swiss-Prot
Match: Q9LYJ9 (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 6.6e-27
Identity = 75/174 (43.10%), Postives = 100/174 (57.47%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATA+A+    RYAPEDP LPKPW+GLVD +TGYLYFWNPETNVTQYERP ++AP   +
Sbjct: 1   MAATASAI----RYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
            + +SSSVQ  + SS          N+ K  + Y            G+  P +       
Sbjct: 61  AIPVSSSVQTNQQSSS-------GFNSGKEDDKYGR----------GSDGP-KSDSGSRF 120

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            +A R     S+D ++G  +   GG+  +G   S AG+ LS E+Y ++HEIT S
Sbjct: 121 NEAGRTGPISSNDAASGLGNASSGGSSARGPPSSAAGNELSPEAYCRKHEITVS 152

[Close]

BLAST of CaUC10G190720 vs. ExPASy Swiss-Prot
Match: Q8H136 (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 60
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 61  SIVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPI 120
             VS+SSSVQ+Q+     +Y+    +++DK          F                   
Sbjct: 61  PAVSVSSSVQVQQTD---AYAP--PKDDDKYSRGSERVSRFS------------------ 120

Query: 121 LLQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDA-GSGLSAESYRQRHEITFS 175
             +  R     S+  +NG   + +G A  +   PS A  S LS E+Y +RHEIT S
Sbjct: 121 --EGGRSGPPYSNGAANGVGDSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVS 149

[Close]

BLAST of CaUC10G190720 vs. ExPASy Swiss-Prot
Match: P46942 (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-21
Identity = 74/180 (41.11%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 3   ATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPV-----AAAPL 62
           A  TA S GP YAPEDPTLPKPW+GLVDG TG++YFWNPETN TQYERPV      +AP 
Sbjct: 2   AVVTASSAGPSYAPEDPTLPKPWKGLVDGTTGFIYFWNPETNDTQYERPVPSSHAVSAPA 61

Query: 63  NSSIVSISSSVQIQKPSSGHSYSNNLNEN---NDKTRENYNNWFYFCILIPTGTQVPLEY 122
           + S V +SSSV  +KPS G  Y  +   N   N+K   + ++ F+       GT V   Y
Sbjct: 62  HKSSVFVSSSV--EKPSQGQRYDADGGHNRGSNNKIARSSSDRFH------DGTSVHEGY 121

Query: 123 YCDPILLQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
               +    S+    + ++ S    + G   APL     S   +G  +E  R+ H+  FS
Sbjct: 122 GSLGVGSDISQESYCRRNEIS---VTGGDVPAPL----TSFEATGFPSEIVREMHQAGFS 166

[Close]

BLAST of CaUC10G190720 vs. ExPASy Swiss-Prot
Match: Q9SQV1 (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-20
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MAATA-TAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNS 60
          MA T  T  S GPRYAPEDPTLP+PW+GL+DG TG LY+WNPETNVTQYERP A  P ++
Sbjct: 1  MATTEDTPASAGPRYAPEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPHSA 60

Query: 61 SIVSISSSVQIQKPSSGHSY 80
          +   ++   QI  PSSG  +
Sbjct: 61 TTPKLA---QIPVPSSGQGH 77

[Close]

BLAST of CaUC10G190720 vs. ExPASy Swiss-Prot
Match: Q5VQL1 (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 60/177 (33.90%), Postives = 84/177 (47.46%), Query Frame = 0


Query: 2   AATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSI 61
           AA A A + GPRYAP DPTLPKPWRGL+DG TGYLYFWNPET   QY+RP A  P +   
Sbjct: 4   AAAAAATARGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSSPPA 63

Query: 62  VSISSSVQIQKPS-----SGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYC 121
                  +   P+     +G S + N    +D+ R ++ N  +       G+      + 
Sbjct: 64  QQPPERPRNSDPAESQAQAGASRTQNAAPADDRARNDHLNDHFERRTEAAGSHAQNVPFT 123

Query: 122 DPILLQASRGETFQSHDTSNGTPSTGHGGAPLKG-HRPSDAGSGLSAESYRQRHEIT 173
           +             +    +  P +  G  P +     + +G   S E+YR +HEIT
Sbjct: 124 EQ-----------NTRSNPSSQPCSAAGVYPAQNVFSEAASGDRTSPEAYRAKHEIT 169

[Close]

BLAST of CaUC10G190720 vs. ExPASy TrEMBL
Match: A0A0A0LG68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838660 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.1e-68
Identity = 137/174 (78.74%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 63  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 122

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 123 IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 182

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSNGTP+TGHGGAPLKGHRPSDAG+G+SAESYRQRHEITFS
Sbjct: 183 -EVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFS 214

[Close]

BLAST of CaUC10G190720 vs. ExPASy TrEMBL
Match: A0A5A7UCZ5 (DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00230 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 137/177 (77.40%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSN---GTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSN   G PSTGHGGAPLKGH+PSDAGSGLSA+SYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTSNGIHGAPSTGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFS 155

[Close]

BLAST of CaUC10G190720 vs. ExPASy TrEMBL
Match: A0A5D3BM24 (DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00240 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 137/177 (77.40%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSN---GTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSN   G PSTGHGGAPLKGH+PSDAGSGLSA+SYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTSNGIHGAPSTGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFS 155

[Close]

BLAST of CaUC10G190720 vs. ExPASy TrEMBL
Match: A0A1S3B7U1 (DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo OX=3656 GN=LOC103487108 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 137/177 (77.40%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQIQKPSSGHSY+NNLNENNDK                 G+  P +       
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDK--------------YGRGSHAPKQ------- 120

Query: 121 LQASRGETFQSHDTSN---GTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDTSN   G PSTGHGGAPLKGH+PSDAGSGLSA+SYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTSNGIHGAPSTGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFS 155

[Close]

BLAST of CaUC10G190720 vs. ExPASy TrEMBL
Match: A0A6J1J570 (DEAD-box ATP-dependent RNA helicase 46-like OS=Cucurbita maxima OX=3661 GN=LOC111481466 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.0e-62
Identity = 133/174 (76.44%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
           IVSISSSVQ+QKPSSGHSY NNL+ENNDK    Y                P         
Sbjct: 61  IVSISSSVQVQKPSSGHSYGNNLSENNDK----YGR---------VSHGAPKH------- 120

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            + +RGETFQSHDT NG  STGHGGA LKGHRPSDAGS LSAESYRQRHEITFS
Sbjct: 121 -EVARGETFQSHDTLNGISSTGHGGASLKGHRPSDAGSCLSAESYRQRHEITFS 153

[Close]

BLAST of CaUC10G190720 vs. TAIR 10
Match: AT5G14610.1 (DEAD box RNA helicase family protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 75/174 (43.10%), Postives = 100/174 (57.47%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATA+A+    RYAPEDP LPKPW+GLVD +TGYLYFWNPETNVTQYERP ++AP   +
Sbjct: 1   MAATASAI----RYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
            + +SSSVQ  + SS          N+ K  + Y            G+  P +       
Sbjct: 61  AIPVSSSVQTNQQSSS-------GFNSGKEDDKYGR----------GSDGP-KSDSGSRF 120

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            +A R     S+D ++G  +   GG+  +G   S AG+ LS E+Y ++HEIT S
Sbjct: 121 NEAGRTGPISSNDAASGLGNASSGGSSARGPPSSAAGNELSPEAYCRKHEITVS 152

[Close]

BLAST of CaUC10G190720 vs. TAIR 10
Match: AT5G14610.2 (DEAD box RNA helicase family protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 75/174 (43.10%), Postives = 100/174 (57.47%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60
           MAATA+A+    RYAPEDP LPKPW+GLVD +TGYLYFWNPETNVTQYERP ++AP   +
Sbjct: 1   MAATASAI----RYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 60

Query: 61  IVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPIL 120
            + +SSSVQ  + SS          N+ K  + Y            G+  P +       
Sbjct: 61  AIPVSSSVQTNQQSSS-------GFNSGKEDDKYGR----------GSDGP-KSDSGSRF 120

Query: 121 LQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDAGSGLSAESYRQRHEITFS 175
            +A R     S+D ++G  +   GG+  +G   S AG+ LS E+Y ++HEIT S
Sbjct: 121 NEAGRTGPISSNDAASGLGNASSGGSSARGPPSSAAGNELSPEAYCRKHEITVS 152

[Close]

BLAST of CaUC10G190720 vs. TAIR 10
Match: AT3G01540.2 (DEAD box RNA helicase 1 )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 60
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 61  SIVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPI 120
             VS+SSSVQ+Q+     +Y+    +++DK          F                   
Sbjct: 61  PAVSVSSSVQVQQTD---AYAP--PKDDDKYSRGSERVSRFS------------------ 120

Query: 121 LLQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDA-GSGLSAESYRQRHEITFS 175
             +  R     S+  +NG   + +G A  +   PS A  S LS E+Y +RHEIT S
Sbjct: 121 --EGGRSGPPYSNGAANGVGDSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVS 149

[Close]

BLAST of CaUC10G190720 vs. TAIR 10
Match: AT3G01540.1 (DEAD box RNA helicase 1 )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 60
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 61  SIVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPI 120
             VS+SSSVQ+Q+     +Y+    +++DK          F                   
Sbjct: 61  PAVSVSSSVQVQQTD---AYAP--PKDDDKYSRGSERVSRFS------------------ 120

Query: 121 LLQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDA-GSGLSAESYRQRHEITFS 175
             +  R     S+  +NG   + +G A  +   PS A  S LS E+Y +RHEIT S
Sbjct: 121 --EGGRSGPPYSNGAANGVGDSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVS 149

[Close]

BLAST of CaUC10G190720 vs. TAIR 10
Match: AT3G01540.3 (DEAD box RNA helicase 1 )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = 0


Query: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 60
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 61  SIVSISSSVQIQKPSSGHSYSNNLNENNDKTRENYNNWFYFCILIPTGTQVPLEYYCDPI 120
             VS+SSSVQ+Q+     +Y+    +++DK          F                   
Sbjct: 61  PAVSVSSSVQVQQTD---AYAP--PKDDDKYSRGSERVSRFS------------------ 120

Query: 121 LLQASRGETFQSHDTSNGTPSTGHGGAPLKGHRPSDA-GSGLSAESYRQRHEITFS 175
             +  R     S+  +NG   + +G A  +   PS A  S LS E+Y +RHEIT S
Sbjct: 121 --EGGRSGPPYSNGAANGVGDSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVS 149

The following BLAST results are available for this feature:

BLAST of CaUC10G190720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652287.1	1.3e-67	78.74	DEAD-box ATP-dependent RNA helicase 46 [Cucumis sativus]	[more]
KAE8651258.1	1.3e-67	78.74	hypothetical protein Csa_002550 [Cucumis sativus]	[more]
XP_038903376.1	6.9e-66	78.16	DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903378.1 DEAD-...	[more]
KAA0053652.1	1.2e-65	77.40	DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo var. makuwa]	[more]
XP_008443543.1	1.2e-65	77.40	PREDICTED: DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo] >TYK00823.1 DEA...	[more]

BLAST of CaUC10G190720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYJ9	6.6e-27	43.10	DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 P...	[more]
Q8H136	1.9e-21	42.05	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 P...	[more]
P46942	3.2e-21	41.11	ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=...	[more]
Q9SQV1	6.0e-20	60.00	DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 P...	[more]
Q5VQL1	1.2e-17	33.90	DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of CaUC10G190720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG68	6.1e-68	78.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838660 PE=4 SV=1	[more]
A0A5A7UCZ5	5.7e-66	77.40	DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3BM24	5.7e-66	77.40	DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B7U1	5.7e-66	77.40	DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo OX=3656 GN=LOC103487108 P...	[more]
A0A6J1J570	5.0e-62	76.44	DEAD-box ATP-dependent RNA helicase 46-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CaUC10G190720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14610.1	4.7e-28	43.10	DEAD box RNA helicase family protein	[more]
AT5G14610.2	4.7e-28	43.10	DEAD box RNA helicase family protein	[more]
AT3G01540.2	1.3e-22	42.05	DEAD box RNA helicase 1	[more]
AT3G01540.1	1.3e-22	42.05	DEAD box RNA helicase 1	[more]
AT3G01540.3	1.3e-22	42.05	DEAD box RNA helicase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 20..53 e-value: 1.7E-5 score: 34.2
IPR001202	WW domain	PFAM	PF00397	WW	coord: 21..51 e-value: 9.8E-7 score: 28.8
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 25..51
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 19..53 score: 10.955
IPR001202	WW domain	CDD	cd00201	WW	coord: 22..52 e-value: 0.00149956 score: 32.885
None	No IPR available	GENE3D	2.20.70.10		coord: 11..59 e-value: 1.5E-6 score: 29.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 13..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G190720.1	CaUC10G190720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003724	RNA helicase activity