CaUC10G189470 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G189470
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 23340336 .. 23341468 (-)
RNA-Seq ExpressionCaUC10G189470
SyntenyCaUC10G189470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCTCAGCCTCGGAGGTTGAGACCAAGCAACATAACATGTTCACCTCAGCCTTAGAGATCGAGCTTGAGGTCACTCTTTTTTCCCTTCACGAGGGCATACTTCCTATGGGTCGCGATCTTAGCCCCCATGATTGCCCCAAGTTGGCATCTTCGAGTCCCTTCTAAATTAGGAACTCTATAGTTCATCATTCTATAAAAAAAATTATAACTCCACAAAAGATAATTAAGTTGCTCTTCCTAGTGTCAGCATGCTATGACCATTTGCTATAAATACTAACTTAAGCATCATAAATTCGGTGGCAGGCATTACACCATGTATTATCTGTTTGTTTTGCAAGTGACTTCATCCTTCAAATACAAATTTATCATCGATGACATGTGAAGGTCTAGCGCTATAAATTTAGAAAATAGTCACCCCTAATAATTTGGAGTTACTTTGAAATTGAAATCACCACATTATAAAAAAATATTATTTTTTGAAATTTATGATTTTTGGAATAATCTTAATCAATGGGTTATTAGTTTGTGCATTTGGTCAAAGTTATTTTTGTGTCATAACTTTATGTTATTAAAATTAGCAAGTTTATTTTTACACAATTTTCTTTGGTTAAAATTAGTAGTTGAATTAGCTTAAATGGAATTGAAGAGTTGAAATTTTAGAGTCGAAAATTGATATACAACCTAACAATTAGGTCAAAATACATCTTTTTCAAACACATATATATGTATGGACTATGCAATTGGCATTAATTGTATTGTCATTAACTGTAATGATTTGTATGGTCTTATTTAAATAGATCTCTCTCTACAAAGTTGACTTTTGATTTTGGCTGAAGGAATTGCTGAAAAGACAGAGACAATTAATTTGGTAATTAAATCATTCTATTAAATTAGTCTTCTTCTTCTCTATCAAATTTCATCCTCTTTCCAATCAAACCAGAAAGAAGAAGAAGAAGAAAAACAAAATGAATCAAAATTTGAGCTCTCTCCTAATAGGTTTGGTGGGTGCAGCCATCACTTTGTCTGCTTATTCTCAAACTTTGATATCTCCAACTGAGTGCATTACAGTGGGCCTTCTGGTTCTCATTTTTGGTCTTCTTGTCAATGAAGGTTTCATCTCTCTTTAA

mRNA sequence

ATGTCCACCTCAGCCTCGGAGGTTGAGACCAAGCAACATAACATGTTCACCTCAGCCTTAGAGATCGAGCTTGAGGTCACTCTTTTTTCCCTTCACGAGGGCATACTTCCTATGGGTCGCGATCTTAGCCCCCATGATTGCCCCAAGTTGGCATCTTCGAGTTTGGTGGGTGCAGCCATCACTTTGTCTGCTTATTCTCAAACTTTGATATCTCCAACTGAGTGCATTACAGTGGGCCTTCTGGTTCTCATTTTTGGTCTTCTTGTCAATGAAGGTTTCATCTCTCTTTAA

Coding sequence (CDS)

ATGTCCACCTCAGCCTCGGAGGTTGAGACCAAGCAACATAACATGTTCACCTCAGCCTTAGAGATCGAGCTTGAGGTCACTCTTTTTTCCCTTCACGAGGGCATACTTCCTATGGGTCGCGATCTTAGCCCCCATGATTGCCCCAAGTTGGCATCTTCGAGTTTGGTGGGTGCAGCCATCACTTTGTCTGCTTATTCTCAAACTTTGATATCTCCAACTGAGTGCATTACAGTGGGCCTTCTGGTTCTCATTTTTGGTCTTCTTGTCAATGAAGGTTTCATCTCTCTTTAA

Protein sequence

MSTSASEVETKQHNMFTSALEIELEVTLFSLHEGILPMGRDLSPHDCPKLASSSLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL
Homology
BLAST of CaUC10G189470 vs. NCBI nr
Match: XP_031737855.1 (uncharacterized protein LOC105435000 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL
Sbjct: 12 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 53

BLAST of CaUC10G189470 vs. NCBI nr
Match: XP_016899638.1 (PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL
Sbjct: 44 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

BLAST of CaUC10G189470 vs. NCBI nr
Match: XP_038905779.1 (uncharacterized protein LOC120091734 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAAITLSAYSQTLISPTECIT+GLLVLIFGLLVNEGFISL
Sbjct: 12 LVGAAITLSAYSQTLISPTECITMGLLVLIFGLLVNEGFISL 53

BLAST of CaUC10G189470 vs. NCBI nr
Match: XP_022159078.1 (uncharacterized protein LOC111025520 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAAITLSAYSQT ISPTECITVGLLVLIFGLLVNEG ISL
Sbjct: 51 LVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

BLAST of CaUC10G189470 vs. NCBI nr
Match: XP_023531694.1 (uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-09
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 42 LVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 83

BLAST of CaUC10G189470 vs. ExPASy TrEMBL
Match: A0A1S4DUJ5 (uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL
Sbjct: 44 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 85

BLAST of CaUC10G189470 vs. ExPASy TrEMBL
Match: A0A6J1DXU0 (uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025520 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.9e-10
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAAITLSAYSQT ISPTECITVGLLVLIFGLLVNEG ISL
Sbjct: 51 LVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

BLAST of CaUC10G189470 vs. ExPASy TrEMBL
Match: A0A6J1F0Z9 (uncharacterized protein LOC111441164 OS=Cucurbita moschata OX=3662 GN=LOC111441164 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          LVGAA+TLSAYSQT +SPTECIT GLLVL+FGLLVNEGFIS+
Sbjct: 12 LVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 53

BLAST of CaUC10G189470 vs. ExPASy TrEMBL
Match: A0A438H8K6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_037271 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.8e-09
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          +VGA ITLSAYSQTLISPT+C+TVGLLVL+FGLLV EGFISL
Sbjct: 12 VVGAIITLSAYSQTLISPTQCVTVGLLVLMFGLLVREGFISL 53

BLAST of CaUC10G189470 vs. ExPASy TrEMBL
Match: A0A2I4EKP4 (uncharacterized protein LOC108990459 OS=Juglans regia OX=51240 GN=LOC108990459 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 55 LVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEGFISL 97
          +VGA ITLSAYSQTL++PT+CITVGLLVL+FGLLV EGFISL
Sbjct: 12 IVGATITLSAYSQTLVNPTQCITVGLLVLMFGLLVREGFISL 53

BLAST of CaUC10G189470 vs. TAIR 10
Match: AT3G29034.1 (unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 17 TSALEIELEVTLFSLHEGILPMGRDLSPHDCPKLASSSLVGAAITLSAYSQTLISPTECI 76
          T  +E + E  +    E + P  R +S  +   L    LVG A+TL AYSQT + P + I
Sbjct: 8  TEKVEEKREQEVVDQEEKVKPRQRSVSRRNMQSLV-IGLVGGALTLGAYSQTYVDPGKSI 67

Query: 77 TVGLLVLIFGLLVNEGFISL 97
            GL VL FGLLV+EGFISL
Sbjct: 68 GAGLFVLFFGLLVSEGFISL 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031737855.17.4e-11100.00uncharacterized protein LOC105435000 [Cucumis sativus][more]
XP_016899638.17.4e-11100.00PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo][more]
XP_038905779.11.7e-1097.62uncharacterized protein LOC120091734 [Benincasa hispida][more]
XP_022159078.11.8e-0995.24uncharacterized protein LOC111025520 [Momordica charantia][more]
XP_023531694.15.3e-0985.71uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4DUJ53.6e-11100.00uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=... [more]
A0A6J1DXU08.9e-1095.24uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1F0Z92.6e-0985.71uncharacterized protein LOC111441164 OS=Cucurbita moschata OX=3662 GN=LOC1114411... [more]
A0A438H8K69.8e-0985.71Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_037271 PE=4 SV=1[more]
A0A2I4EKP41.3e-0883.33uncharacterized protein LOC108990459 OS=Juglans regia OX=51240 GN=LOC108990459 P... [more]
Match NameE-valueIdentityDescription
AT3G29034.11.7e-0845.00unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G189470.1CaUC10G189470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane