CaUC10G187520 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATTTGCACACCATACCATCTCATCTAATCTCATCTCCTCTCTTCATCGTCGACAAAACAATGGCCTCTTCCAAGTACTTGATGATCCTAACTTTCACGGCTACTTTGGTGTTCTCAACCATCGACACTAGTCGAGCGGCTCGTCATCTCCTGCAAACCGCCCCGCCGAACATGCCAGGGTTGCCTTCATTGCCTAAACCGACTGCACTGCCTCCTCTACCGCCTTTGCCGACGGTACCAAACATGCCCTCTATTCCAAATCTCCCACAACCAACATTGCCTACTTCTCTCCCTAAGTTACCTCCACTTCCAAGTTTCCCCGGTAACATCCCGGTCACCGGAGTGACGCTCCCTCCGCTCCCGACAACTTCACTTCCGACTCTACCTTCCATCCCGACAACTTTCCCGTCCATCCCTTTCCTCACTCCGCCCCCGGCCACCACCTCTTCACCTTGA ATGTATTTGCACACCATACCATCTCATCTAATCTCATCTCCTCTCTTCATCGTCGACAAAACAATGGCCTCTTCCAAGTACTTGATGATCCTAACTTTCACGGCTACTTTGGTGTTCTCAACCATCGACACTAGTCGAGCGGCTCGTCATCTCCTGCAAACCGCCCCGCCGAACATGCCAGGGTTGCCTTCATTGCCTAAACCGACTGCACTGCCTCCTCTACCGCCTTTGCCGACGGTACCAAACATGCCCTCTATTCCAAATCTCCCACAACCAACATTGCCTACTTCTCTCCCTAAGTTACCTCCACTTCCAAGTTTCCCCGGTAACATCCCGGTCACCGGAGTGACGCTCCCTCCGCTCCCGACAACTTCACTTCCGACTCTACCTTCCATCCCGACAACTTTCCCGTCCATCCCTTTCCTCACTCCGCCCCCGGCCACCACCTCTTCACCTTGA ATGTATTTGCACACCATACCATCTCATCTAATCTCATCTCCTCTCTTCATCGTCGACAAAACAATGGCCTCTTCCAAGTACTTGATGATCCTAACTTTCACGGCTACTTTGGTGTTCTCAACCATCGACACTAGTCGAGCGGCTCGTCATCTCCTGCAAACCGCCCCGCCGAACATGCCAGGGTTGCCTTCATTGCCTAAACCGACTGCACTGCCTCCTCTACCGCCTTTGCCGACGGTACCAAACATGCCCTCTATTCCAAATCTCCCACAACCAACATTGCCTACTTCTCTCCCTAAGTTACCTCCACTTCCAAGTTTCCCCGGTAACATCCCGGTCACCGGAGTGACGCTCCCTCCGCTCCCGACAACTTCACTTCCGACTCTACCTTCCATCCCGACAACTTTCCCGTCCATCCCTTTCCTCACTCCGCCCCCGGCCACCACCTCTTCACCTTGA MYLHTIPSHLISSPLFIVDKTMASSKYLMILTFTATLVFSTIDTSRAARHLLQTAPPNMPGLPSLPKPTALPPLPPLPTVPNMPSIPNLPQPTLPTSLPKLPPLPSFPGNIPVTGVTLPPLPTTSLPTLPSIPTTFPSIPFLTPPPATTSSP Homology
BLAST of CaUC10G187520 vs. NCBI nr
Match: XP_038904304.1 (RNA-binding protein 12-like [Benincasa hispida]) HSP 1 Score: 220.7 bits (561), Expect = 8.6e-54 Identity = 122/131 (93.13%), Postives = 124/131 (94.66%), Query Frame = 0
BLAST of CaUC10G187520 vs. NCBI nr
Match: KAA0044282.1 (proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 181.4 bits (459), Expect = 5.8e-42 Identity = 110/134 (82.09%), Postives = 111/134 (82.84%), Query Frame = 0
BLAST of CaUC10G187520 vs. NCBI nr
Match: TYK29413.1 (proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 178.3 bits (451), Expect = 4.9e-41 Identity = 109/134 (81.34%), Postives = 109/134 (81.34%), Query Frame = 0
BLAST of CaUC10G187520 vs. NCBI nr
Match: KAE8649389.1 (hypothetical protein Csa_011847 [Cucumis sativus]) HSP 1 Score: 177.9 bits (450), Expect = 6.4e-41 Identity = 107/136 (78.68%), Postives = 109/136 (80.15%), Query Frame = 0
BLAST of CaUC10G187520 vs. NCBI nr
Match: XP_011654355.1 (uncharacterized protein LOC105435357 [Cucumis sativus]) HSP 1 Score: 174.1 bits (440), Expect = 9.2e-40 Identity = 105/134 (78.36%), Postives = 107/134 (79.85%), Query Frame = 0
BLAST of CaUC10G187520 vs. ExPASy TrEMBL
Match: A0A5A7TLS8 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00030 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.8e-42 Identity = 110/134 (82.09%), Postives = 111/134 (82.84%), Query Frame = 0
BLAST of CaUC10G187520 vs. ExPASy TrEMBL
Match: A0A5D3E045 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00030 PE=4 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 2.4e-41 Identity = 109/134 (81.34%), Postives = 109/134 (81.34%), Query Frame = 0
BLAST of CaUC10G187520 vs. ExPASy TrEMBL
Match: A0A0A0KWI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40 Identity = 105/134 (78.36%), Postives = 107/134 (79.85%), Query Frame = 0
BLAST of CaUC10G187520 vs. ExPASy TrEMBL
Match: A0A6J1J782 (uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34 Identity = 101/134 (75.37%), Postives = 105/134 (78.36%), Query Frame = 0
BLAST of CaUC10G187520 vs. ExPASy TrEMBL
Match: A0A1S3BYT0 (proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494865 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33 Identity = 93/115 (80.87%), Postives = 94/115 (81.74%), Query Frame = 0
BLAST of CaUC10G187520 vs. TAIR 10
Match: AT4G38080.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06 Identity = 56/135 (41.48%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of CaUC10G187520 vs. TAIR 10
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 46.6 bits (109), Expect = 2.1e-05 Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 0
BLAST of CaUC10G187520 vs. TAIR 10
Match: AT1G44224.1 (ECA1 gametogenesis related family protein ) HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 0
BLAST of CaUC10G187520 vs. TAIR 10
Match: AT2G22510.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 41.2 bits (95), Expect = 8.7e-04 Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|