CaUC10G187380 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G187380
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionsplicing factor 3B subunit 1
LocationCiama_Chr10: 18246674 .. 18250462 (-)
RNA-Seq ExpressionCaUC10G187380
SyntenyCaUC10G187380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAGAGATTGCCAAAACCCAGGAGGAGAGGAGGAAGATGGAACAGCAGTTGGCTTCTCTCAATTCAGTGACCTTCGATACTGATCTTTATGGTGGGAATGATAAAGCGGGTTATGTGACCTCCATCCCGGTTAACGAGGATGATGAGAATCTTGAATCCTTGGATAACGAGGTTGCTCGGAAGTTGGCATCCTATACAGCACCGAAGTCTCTGCTAAAGGAGATGCCAAGAGGTGGGGATGAAGATGATGATTTGGGGTTTAAGAAGCCGCAGAGGATTATTGATAGAGAGGATGATTATAGGAAACGTAGGTTGAATAGAGTGATATCACCTGAGCGGCATGATGCGTTTGCTGCGGGTGAAAAGACACCGGACCCGTCTGTGAGGACTTATGCAGAGGTGATGAGAGAAGAGGCGTTGAAGAGGGAGAGGGAGGAGACGTTAAGGGCTATAGCTAAGAAGAAGGAGGAAGAGGAAGCCGCTAAGGCATCTGGAGAGAAACCAAAGGAGTCGGTTGTAGCAGCTGCAGCTCCTCAGAAGAGGAGGAATAGGTGGGATCAATCGCAGGATGATGGTGGAGCGAAAAAAGCAAAGACCTCGGATTGGGATTTGCCCGATACAACACCCGGAAGGTGGGATGCTACACCAGGCCGTGTGGGGGATGCCACTCCTGGTGTGGGCAGAAGGAATAGGTGGGATGAGACTCCAACTCCTGGGAGGTTGGCTGATTTGGATGCAACTCCAGCAGGTGGTGTTACACCGGGTGCAACCCCCGCTGGAATGACTTGGGATGCAACTCCTAAACTTGCTGGAATGGCTACACCAACTCCAAAGAGGCAGCGATCACGATGGGATGAAACCCCAGCAACAATGGGAAGCGCCACTCCTATGCCTGGAGCAACCCCTGCTGCTGCATTTACTCCCGGTGTGACTCCTGTTGGAGGGGTTGAGCTGGCTACCCCAACACCTGGGGCTATCAATTTGCGTGGCCCGATGACCCCTGAGCAGTATAATTTGATGAGGTGGGAGAGAGATATTGAGGAGAGGAACCGCCCATTGACTGATGAAGAACTTGATGCTATGTTTCCACAAGAGGGATATAAGATTCTGGACCCTCCTGCTTCCTATGTGCCAATTCGAACCCCTGCAAGGAAGTTGCTTGCCACACCAACTCCAATGGGAACTCCTCTTTATGCCATCCCAGAGGAGAATCGTGGCCAGCAGTTTGATGTTCCAAAGGAAGCACCTGGTGGCTTGCCATTCATGAAGCCTGAGGATTACCAATACTTTGGGGCATTGTTGAACGAGGAAGATGAGGAGGAATTGTCTCCCGAAGAACAGAAAGAGCGGAAGATTATGAAGCTCTTGCTCAAGGTTAAGAATGGAACACCTCCTCAGAGGAAAACAGCTTTAAGGCAGCTTACTGATAAAGCTCGTGAGTTTGGTGCAGGCCCATTGTTCAACCGCATTCTGCCACTCCTTATGCAGCCTACTCTGGAGGACCAGGAGAGGCATCTTCTGGTTAAGGTTATTGACAGAGTGCTTTATAAATTGGATGAATTGGTTCGTCCCTATGTGCACAAAATTCTTGTTGTGATTGAACCGTTGTTGATCGATGAAGATTACTATGCACGTGTAGAAGGTAGAGAAATTATATCCAATCTTAGTAAAGCAGCTGGTTTGGCTACTATGATTGCTGCAATGCGTCCAGATATTGACAACATTGATGAGTATGTTAGGAATACCACCGCAAGGGCTTTTAGTGTTGTTGCTTCTGCCCTTGGAATTCCTGCCCTTCTTCCATTTCTGAAAGCCGTGTGTCAGAGTAAAAAATCGTGGCAAGCTCGGCATACTGGAATTAAGATTGTTCAGCAGATTGCTATTCTCATTGGTTGTGCTGTTCTACCACATCTTAGGTCTCTTGTAGAAATTATAGAACATGGTCTTAATGATGAGAACCAGAAGGTGAGGACAATTACTGCTTTGTCTCTAGCTGCGCTTGCTGAGGCTGCAGCCCCATATGGTATTGAAAGCTTTGATTCAGTCTTGAAGCCACTGTGGAAGGGTATTAGGTCGCACCGTGGTAAGGTGTTGGCTGCTTTCCTGAAGGCAATTGGTTTTATTATTCCTTTGATGGATGCATTGTATGCCTGCTACTATACAAAGGAAGTGATGTACATTCTGATTCGAGAGTTCCAGTCACCCGATGAAGAAATGAAAAAAATTGTTCTCAAAGTGGTCAAGCAGTGTGTGAGCACTGAGGGAGTAGAGGCTGATTATATCCGTAATGATATTCTCCCTGAATTCTTTAGGAATTTCTGGGTTCGCAGAATGGCTTTAGATCGAAGAAATTACAAGCAACTTGTGGACACAACTGTTGAGATAGCAAATAAAGTAGGTGTTGCTGATATCGTAGGTAGAGTTGTTGAAGATCTCAAGGATGAAAGTGAACCTTATAGAAGAATGGTTATGGAAACAATTGAGAAAGTTGTTGCAAACCTGGGTGCATCTGATATTGATGCTAGATTAGAAGAGCTATTGATTGATGGGATTCTTTATGCGTTCCAAGAGCAGACCAGCGATGATGCTAACGTTATGCTTAATGGGTTTGGTGCAGTTGTCAATTCTCTTGGGCAGAGAGTAAAACCGTATCTTCCCCAGATTTGTGGTACCATAAAGTGGCGTCTAAATAACAAGAGTGCGAAGGTGAGACAACAAGCAGCAGATCTTATTTCAAGGATTGCAGTTGTTATGAAGCAGTGCCAAGAGGAACAACTCATGGGCCATCTTGGCGTTGTCTTGTATGAATATTTGGGGGAAGAATACCCAGAAGTTTTGGGTTCAATTTTGGGAGCTCTCAAGGCTATAGTTAATGTTATTGGTATGACAAAGATGACGCCTCCTATCAAGGACTTGCTTCCTAGATTAACACCAATTTTGAAGAACAGACATGAAAAAGTTCAAGAGAACTGCATTGACCTTGTTGGTCGTATTGCTGATCGTGGTGCTGAATTTGTTCCAGCAAGAGAATGGATGAGGATCTGCTTTGAGTTGCTTGAGATGCTCAAAGCTCACAAGAAGGGTATCCGTCGAGCTACAGTGAACACTTTTGGGTATATTGCTAAAGCTATTGGGCCTCAAGATGTTTTGGCAACTTTGTTGAACAATCTAAAAGTGCAGGAGCGTCAGAATCGTGTTTGCACTACTGTTGCCATTGCAATAGTTGCAGAAACCTGTTCGCCGTTCACCGTTCTACCCGCTCTAATGAATGAGTATCGTGTGCCAGAGCTCAATGTGCAAAATGGTGTGTTGAAGTCTCTCTCTTTCCTTTTCGAGTATATTGGTGAAATGGGAAAGGATTACATATATGCTGTGACGCCGTTGCTTGAGGATGCCCTTATGGACCGAGACTTGGTCCACAGACAAACTGCAGCCTCTGCTGTGAAACATATGGCTCTAGGGGTGGCCGGTTTAGGTTGTGAGGATGCCTTAGTCCACTTGCTGAACTACGTATGGCCGAACATATTCGAAACATCACCACACGTCATAAACGCTGTGATGGAAGCCATTGAAGGAATGAGGGTGGCATTGGGCGCAGCCGTTGTGCTCAACTACTGCCTGCAGGGGCTTTTTCACCCCGCTCGGAAAGTTCGAGAAGTATACTGGAAAATCTACAACTCACTGTACATTGGTGCTCAGGATGCTCTCGTTGCATCTTATCCAGCATTAGAGGATGGAGAAAACAATGTGTACAGCCGACCGGAACTGGTGATGTTTATCTGA

mRNA sequence

ATGGATTTAGAGATTGCCAAAACCCAGGAGGAGAGGAGGAAGATGGAACAGCAGTTGGCTTCTCTCAATTCAGTGACCTTCGATACTGATCTTTATGGTGGGAATGATAAAGCGGGTTATGTGACCTCCATCCCGGTTAACGAGGATGATGAGAATCTTGAATCCTTGGATAACGAGGTTGCTCGGAAGTTGGCATCCTATACAGCACCGAAGTCTCTGCTAAAGGAGATGCCAAGAGGTGGGGATGAAGATGATGATTTGGGGTTTAAGAAGCCGCAGAGGATTATTGATAGAGAGGATGATTATAGGAAACGTAGGTTGAATAGAGTGATATCACCTGAGCGGCATGATGCGTTTGCTGCGGGTGAAAAGACACCGGACCCGTCTGTGAGGACTTATGCAGAGGTGATGAGAGAAGAGGCGTTGAAGAGGGAGAGGGAGGAGACGTTAAGGGCTATAGCTAAGAAGAAGGAGGAAGAGGAAGCCGCTAAGGCATCTGGAGAGAAACCAAAGGAGTCGGTTGTAGCAGCTGCAGCTCCTCAGAAGAGGAGGAATAGGTGGGATCAATCGCAGGATGATGGTGGAGCGAAAAAAGCAAAGACCTCGGATTGGGATTTGCCCGATACAACACCCGGAAGGTGGGATGCTACACCAGGCCGTGTGGGGGATGCCACTCCTGGTGTGGGCAGAAGGAATAGGTGGGATGAGACTCCAACTCCTGGGAGGTTGGCTGATTTGGATGCAACTCCAGCAGGTGGTGTTACACCGGGTGCAACCCCCGCTGGAATGACTTGGGATGCAACTCCTAAACTTGCTGGAATGGCTACACCAACTCCAAAGAGGCAGCGATCACGATGGGATGAAACCCCAGCAACAATGGGAAGCGCCACTCCTATGCCTGGAGCAACCCCTGCTGCTGCATTTACTCCCGGTGTGACTCCTGTTGGAGGGGTTGAGCTGGCTACCCCAACACCTGGGGCTATCAATTTGCGTGGCCCGATGACCCCTGAGCAGTATAATTTGATGAGGTGGGAGAGAGATATTGAGGAGAGGAACCGCCCATTGACTGATGAAGAACTTGATGCTATGTTTCCACAAGAGGGATATAAGATTCTGGACCCTCCTGCTTCCTATGTGCCAATTCGAACCCCTGCAAGGAAGTTGCTTGCCACACCAACTCCAATGGGAACTCCTCTTTATGCCATCCCAGAGGAGAATCGTGGCCAGCAGTTTGATGTTCCAAAGGAAGCACCTGGTGGCTTGCCATTCATGAAGCCTGAGGATTACCAATACTTTGGGGCATTGTTGAACGAGGAAGATGAGGAGGAATTGTCTCCCGAAGAACAGAAAGAGCGGAAGATTATGAAGCTCTTGCTCAAGGTTAAGAATGGAACACCTCCTCAGAGGAAAACAGCTTTAAGGCAGCTTACTGATAAAGCTCGTGAGTTTGGTGCAGGCCCATTGTTCAACCGCATTCTGCCACTCCTTATGCAGCCTACTCTGGAGGACCAGGAGAGGCATCTTCTGGTTAAGGTTATTGACAGAGTGCTTTATAAATTGGATGAATTGGTTCGTCCCTATGTGCACAAAATTCTTGTTGTGATTGAACCGTTGTTGATCGATGAAGATTACTATGCACGTGTAGAAGGTAGAGAAATTATATCCAATCTTAGTAAAGCAGCTGGTTTGGCTACTATGATTGCTGCAATGCGTCCAGATATTGACAACATTGATGAGTATGTTAGGAATACCACCGCAAGGGCTTTTAGTGTTGTTGCTTCTGCCCTTGGAATTCCTGCCCTTCTTCCATTTCTGAAAGCCGTGTGTCAGAGTAAAAAATCGTGGCAAGCTCGGCATACTGGAATTAAGATTGTTCAGCAGATTGCTATTCTCATTGGTTGTGCTGTTCTACCACATCTTAGGTCTCTTGTAGAAATTATAGAACATGGTCTTAATGATGAGAACCAGAAGGTGAGGACAATTACTGCTTTGTCTCTAGCTGCGCTTGCTGAGGCTGCAGCCCCATATGGTATTGAAAGCTTTGATTCAGTCTTGAAGCCACTGTGGAAGGGTATTAGGTCGCACCGTGGTAAGGTGTTGGCTGCTTTCCTGAAGGCAATTGGTTTTATTATTCCTTTGATGGATGCATTGTATGCCTGCTACTATACAAAGGAAGTGATGTACATTCTGATTCGAGAGTTCCAGTCACCCGATGAAGAAATGAAAAAAATTGTTCTCAAAGTGGTCAAGCAGTGTGTGAGCACTGAGGGAGTAGAGGCTGATTATATCCGTAATGATATTCTCCCTGAATTCTTTAGGAATTTCTGGGTTCGCAGAATGGCTTTAGATCGAAGAAATTACAAGCAACTTGTGGACACAACTGTTGAGATAGCAAATAAAGTAGGTGTTGCTGATATCGTAGGTAGAGTTGTTGAAGATCTCAAGGATGAAAGTGAACCTTATAGAAGAATGGTTATGGAAACAATTGAGAAAGTTGTTGCAAACCTGGGTGCATCTGATATTGATGCTAGATTAGAAGAGCTATTGATTGATGGGATTCTTTATGCGTTCCAAGAGCAGACCAGCGATGATGCTAACGTTATGCTTAATGGGTTTGGTGCAGTTGTCAATTCTCTTGGGCAGAGAGTAAAACCGTATCTTCCCCAGATTTGTGGTACCATAAAGTGGCGTCTAAATAACAAGAGTGCGAAGGTGAGACAACAAGCAGCAGATCTTATTTCAAGGATTGCAGTTGTTATGAAGCAGTGCCAAGAGGAACAACTCATGGGCCATCTTGGCGTTGTCTTGTATGAATATTTGGGGGAAGAATACCCAGAAGTTTTGGGTTCAATTTTGGGAGCTCTCAAGGCTATAGTTAATGTTATTGGTATGACAAAGATGACGCCTCCTATCAAGGACTTGCTTCCTAGATTAACACCAATTTTGAAGAACAGACATGAAAAAGTTCAAGAGAACTGCATTGACCTTGTTGGTCGTATTGCTGATCGTGGTGCTGAATTTGTTCCAGCAAGAGAATGGATGAGGATCTGCTTTGAGTTGCTTGAGATGCTCAAAGCTCACAAGAAGGGTATCCGTCGAGCTACAGTGAACACTTTTGGGTATATTGCTAAAGCTATTGGGCCTCAAGATGTTTTGGCAACTTTGTTGAACAATCTAAAAGTGCAGGAGCGTCAGAATCGTGTTTGCACTACTGTTGCCATTGCAATAGTTGCAGAAACCTGTTCGCCGTTCACCGTTCTACCCGCTCTAATGAATGAGTATCGTGTGCCAGAGCTCAATGTGCAAAATGGTGTGTTGAAGTCTCTCTCTTTCCTTTTCGAGTATATTGGTGAAATGGGAAAGGATTACATATATGCTGTGACGCCGTTGCTTGAGGATGCCCTTATGGACCGAGACTTGGTCCACAGACAAACTGCAGCCTCTGCTGTGAAACATATGGCTCTAGGGGTGGCCGGTTTAGGTTGTGAGGATGCCTTAGTCCACTTGCTGAACTACGTATGGCCGAACATATTCGAAACATCACCACACGTCATAAACGCTGTGATGGAAGCCATTGAAGGAATGAGGGTGGCATTGGGCGCAGCCGTTGTGCTCAACTACTGCCTGCAGGGGCTTTTTCACCCCGCTCGGAAAGTTCGAGAAGTATACTGGAAAATCTACAACTCACTGTACATTGGTGCTCAGGATGCTCTCGTTGCATCTTATCCAGCATTAGAGGATGGAGAAAACAATGTGTACAGCCGACCGGAACTGGTGATGTTTATCTGA

Coding sequence (CDS)

ATGGATTTAGAGATTGCCAAAACCCAGGAGGAGAGGAGGAAGATGGAACAGCAGTTGGCTTCTCTCAATTCAGTGACCTTCGATACTGATCTTTATGGTGGGAATGATAAAGCGGGTTATGTGACCTCCATCCCGGTTAACGAGGATGATGAGAATCTTGAATCCTTGGATAACGAGGTTGCTCGGAAGTTGGCATCCTATACAGCACCGAAGTCTCTGCTAAAGGAGATGCCAAGAGGTGGGGATGAAGATGATGATTTGGGGTTTAAGAAGCCGCAGAGGATTATTGATAGAGAGGATGATTATAGGAAACGTAGGTTGAATAGAGTGATATCACCTGAGCGGCATGATGCGTTTGCTGCGGGTGAAAAGACACCGGACCCGTCTGTGAGGACTTATGCAGAGGTGATGAGAGAAGAGGCGTTGAAGAGGGAGAGGGAGGAGACGTTAAGGGCTATAGCTAAGAAGAAGGAGGAAGAGGAAGCCGCTAAGGCATCTGGAGAGAAACCAAAGGAGTCGGTTGTAGCAGCTGCAGCTCCTCAGAAGAGGAGGAATAGGTGGGATCAATCGCAGGATGATGGTGGAGCGAAAAAAGCAAAGACCTCGGATTGGGATTTGCCCGATACAACACCCGGAAGGTGGGATGCTACACCAGGCCGTGTGGGGGATGCCACTCCTGGTGTGGGCAGAAGGAATAGGTGGGATGAGACTCCAACTCCTGGGAGGTTGGCTGATTTGGATGCAACTCCAGCAGGTGGTGTTACACCGGGTGCAACCCCCGCTGGAATGACTTGGGATGCAACTCCTAAACTTGCTGGAATGGCTACACCAACTCCAAAGAGGCAGCGATCACGATGGGATGAAACCCCAGCAACAATGGGAAGCGCCACTCCTATGCCTGGAGCAACCCCTGCTGCTGCATTTACTCCCGGTGTGACTCCTGTTGGAGGGGTTGAGCTGGCTACCCCAACACCTGGGGCTATCAATTTGCGTGGCCCGATGACCCCTGAGCAGTATAATTTGATGAGGTGGGAGAGAGATATTGAGGAGAGGAACCGCCCATTGACTGATGAAGAACTTGATGCTATGTTTCCACAAGAGGGATATAAGATTCTGGACCCTCCTGCTTCCTATGTGCCAATTCGAACCCCTGCAAGGAAGTTGCTTGCCACACCAACTCCAATGGGAACTCCTCTTTATGCCATCCCAGAGGAGAATCGTGGCCAGCAGTTTGATGTTCCAAAGGAAGCACCTGGTGGCTTGCCATTCATGAAGCCTGAGGATTACCAATACTTTGGGGCATTGTTGAACGAGGAAGATGAGGAGGAATTGTCTCCCGAAGAACAGAAAGAGCGGAAGATTATGAAGCTCTTGCTCAAGGTTAAGAATGGAACACCTCCTCAGAGGAAAACAGCTTTAAGGCAGCTTACTGATAAAGCTCGTGAGTTTGGTGCAGGCCCATTGTTCAACCGCATTCTGCCACTCCTTATGCAGCCTACTCTGGAGGACCAGGAGAGGCATCTTCTGGTTAAGGTTATTGACAGAGTGCTTTATAAATTGGATGAATTGGTTCGTCCCTATGTGCACAAAATTCTTGTTGTGATTGAACCGTTGTTGATCGATGAAGATTACTATGCACGTGTAGAAGGTAGAGAAATTATATCCAATCTTAGTAAAGCAGCTGGTTTGGCTACTATGATTGCTGCAATGCGTCCAGATATTGACAACATTGATGAGTATGTTAGGAATACCACCGCAAGGGCTTTTAGTGTTGTTGCTTCTGCCCTTGGAATTCCTGCCCTTCTTCCATTTCTGAAAGCCGTGTGTCAGAGTAAAAAATCGTGGCAAGCTCGGCATACTGGAATTAAGATTGTTCAGCAGATTGCTATTCTCATTGGTTGTGCTGTTCTACCACATCTTAGGTCTCTTGTAGAAATTATAGAACATGGTCTTAATGATGAGAACCAGAAGGTGAGGACAATTACTGCTTTGTCTCTAGCTGCGCTTGCTGAGGCTGCAGCCCCATATGGTATTGAAAGCTTTGATTCAGTCTTGAAGCCACTGTGGAAGGGTATTAGGTCGCACCGTGGTAAGGTGTTGGCTGCTTTCCTGAAGGCAATTGGTTTTATTATTCCTTTGATGGATGCATTGTATGCCTGCTACTATACAAAGGAAGTGATGTACATTCTGATTCGAGAGTTCCAGTCACCCGATGAAGAAATGAAAAAAATTGTTCTCAAAGTGGTCAAGCAGTGTGTGAGCACTGAGGGAGTAGAGGCTGATTATATCCGTAATGATATTCTCCCTGAATTCTTTAGGAATTTCTGGGTTCGCAGAATGGCTTTAGATCGAAGAAATTACAAGCAACTTGTGGACACAACTGTTGAGATAGCAAATAAAGTAGGTGTTGCTGATATCGTAGGTAGAGTTGTTGAAGATCTCAAGGATGAAAGTGAACCTTATAGAAGAATGGTTATGGAAACAATTGAGAAAGTTGTTGCAAACCTGGGTGCATCTGATATTGATGCTAGATTAGAAGAGCTATTGATTGATGGGATTCTTTATGCGTTCCAAGAGCAGACCAGCGATGATGCTAACGTTATGCTTAATGGGTTTGGTGCAGTTGTCAATTCTCTTGGGCAGAGAGTAAAACCGTATCTTCCCCAGATTTGTGGTACCATAAAGTGGCGTCTAAATAACAAGAGTGCGAAGGTGAGACAACAAGCAGCAGATCTTATTTCAAGGATTGCAGTTGTTATGAAGCAGTGCCAAGAGGAACAACTCATGGGCCATCTTGGCGTTGTCTTGTATGAATATTTGGGGGAAGAATACCCAGAAGTTTTGGGTTCAATTTTGGGAGCTCTCAAGGCTATAGTTAATGTTATTGGTATGACAAAGATGACGCCTCCTATCAAGGACTTGCTTCCTAGATTAACACCAATTTTGAAGAACAGACATGAAAAAGTTCAAGAGAACTGCATTGACCTTGTTGGTCGTATTGCTGATCGTGGTGCTGAATTTGTTCCAGCAAGAGAATGGATGAGGATCTGCTTTGAGTTGCTTGAGATGCTCAAAGCTCACAAGAAGGGTATCCGTCGAGCTACAGTGAACACTTTTGGGTATATTGCTAAAGCTATTGGGCCTCAAGATGTTTTGGCAACTTTGTTGAACAATCTAAAAGTGCAGGAGCGTCAGAATCGTGTTTGCACTACTGTTGCCATTGCAATAGTTGCAGAAACCTGTTCGCCGTTCACCGTTCTACCCGCTCTAATGAATGAGTATCGTGTGCCAGAGCTCAATGTGCAAAATGGTGTGTTGAAGTCTCTCTCTTTCCTTTTCGAGTATATTGGTGAAATGGGAAAGGATTACATATATGCTGTGACGCCGTTGCTTGAGGATGCCCTTATGGACCGAGACTTGGTCCACAGACAAACTGCAGCCTCTGCTGTGAAACATATGGCTCTAGGGGTGGCCGGTTTAGGTTGTGAGGATGCCTTAGTCCACTTGCTGAACTACGTATGGCCGAACATATTCGAAACATCACCACACGTCATAAACGCTGTGATGGAAGCCATTGAAGGAATGAGGGTGGCATTGGGCGCAGCCGTTGTGCTCAACTACTGCCTGCAGGGGCTTTTTCACCCCGCTCGGAAAGTTCGAGAAGTATACTGGAAAATCTACAACTCACTGTACATTGGTGCTCAGGATGCTCTCGTTGCATCTTATCCAGCATTAGAGGATGGAGAAAACAATGTGTACAGCCGACCGGAACTGGTGATGTTTATCTGA

Protein sequence

MDLEIAKTQEERRKMEQQLASLNSVTFDTDLYGGNDKAGYVTSIPVNEDDENLESLDNEVARKLASYTAPKSLLKEMPRGGDEDDDLGFKKPQRIIDREDDYRKRRLNRVISPERHDAFAAGEKTPDPSVRTYAEVMREEALKREREETLRAIAKKKEEEEAAKASGEKPKESVVAAAAPQKRRNRWDQSQDDGGAKKAKTSDWDLPDTTPGRWDATPGRVGDATPGVGRRNRWDETPTPGRLADLDATPAGGVTPGATPAGMTWDATPKLAGMATPTPKRQRSRWDETPATMGSATPMPGATPAAAFTPGVTPVGGVELATPTPGAINLRGPMTPEQYNLMRWERDIEERNRPLTDEELDAMFPQEGYKILDPPASYVPIRTPARKLLATPTPMGTPLYAIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYACYYTKEVMYILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFRNFWVRRMALDRRNYKQLVDTTVEIANKVGVADIVGRVVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPALEDGENNVYSRPELVMFI
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877302.10.0e+0099.92splicing factor 3B subunit 1 [Benincasa hispida][more]
XP_008462876.10.0e+0099.29PREDICTED: splicing factor 3B subunit 1 [Cucumis melo] >KAA0061166.1 splicing fa... [more]
XP_022941591.10.0e+0098.89splicing factor 3B subunit 1-like [Cucurbita moschata] >XP_022941592.1 splicing ... [more]
XP_022140896.10.0e+0098.73splicing factor 3B subunit 1 [Momordica charantia] >XP_022140897.1 splicing fact... [more]
XP_004137159.10.0e+0099.05splicing factor 3B subunit 1 [Cucumis sativus] >KGN53720.1 hypothetical protein ... [more]
Match NameE-valueIdentityDescription
O755330.0e+0069.77Splicing factor 3B subunit 1 OS=Homo sapiens OX=9606 GN=SF3B1 PE=1 SV=3[more]
Q99NB90.0e+0069.70Splicing factor 3B subunit 1 OS=Mus musculus OX=10090 GN=Sf3b1 PE=1 SV=1[more]
O576830.0e+0069.63Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1[more]
Q101780.0e+0055.24U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ... [more]
P499558.5e-26754.76U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... [more]
Match NameE-valueIdentityDescription
A0A5A7V3S10.0e+0099.29Splicing factor 3B subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3CHY10.0e+0099.29splicing factor 3B subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501154 PE=3 SV=1[more]
A0A6J1FMX50.0e+0098.89splicing factor 3B subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446900 ... [more]
A0A6J1CHE50.0e+0098.73splicing factor 3B subunit 1 OS=Momordica charantia OX=3673 GN=LOC111011453 PE=3... [more]
A0A6J1JKN20.0e+0098.81splicing factor 3B subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111487765 PE... [more]
Match NameE-valueIdentityDescription
AT5G64270.10.0e+0086.71splicing factor, putative [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..253
NoneNo IPR availablePANTHERPTHR12097:SF1BNAA06G23400D PROTEINcoord: 2..1262
IPR034085TOG domainSMARTSM01349TOG_3coord: 839..1074
e-value: 0.0032
score: 19.0
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1013..1230
e-value: 2.9E-12
score: 48.2
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 502..1001
e-value: 1.5E-50
score: 174.5
IPR015016Splicing factor 3B subunit 1PFAMPF08920SF3b1coord: 277..407
e-value: 1.1E-44
score: 152.1
IPR038737Splicing factor 3B subunit 1-likePANTHERPTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDcoord: 2..1262
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 643..681
score: 8.8312
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 457..1250

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G187380.1CaUC10G187380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000245 spliceosomal complex assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0071004 U2-type prespliceosome
molecular_function GO:0003729 mRNA binding