CaUC10G184550 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G184550
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein LHCP TRANSLOCATION DEFECT
Location	Ciama_Chr10: 6646081 .. 6648107 (+)
RNA-Seq Expression	CaUC10G184550
Synteny	CaUC10G184550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATGTTGACGAGTGCCCATTAGTGAGATGGCCTGGAGCTTTCATCACTGTCAAGATTCATCCAACGTCCAAGATCTCTTCTGCCAACACTTTCCCACAATCCTTACATACCCATTGGCCCACCGGATTCCGAGTGGATGGATAGAACCTGCAAGAGTGCGATAGCAAAATCACATTTTCTTCTTACAGTACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGGTTCTTTTACTGATTACTCCCTTCTTTCTTTGGATTTTGTGGCTTTCTTGTTATTGTCTTTGGGGACTGTGATTGTTTAAGAGCAGGTGTTTTTTGTTTCATTGCTGGTTTGGGGCTGATTCTTATGATTTTGGAAGTTGAAATTGTTCTTACCCTCTTGCCGTTTTTGTTTTCTTTTAGAAGTTTTGTGAATTCGTAAAGGCTCCTTAGTGAAGGAGTGAAGCTAGATGAATGGACTTAAATTGGGAGGTTTTTGTATGGATGGCCTTTCTTAGCAGGGTTAATGGTTTTATGAAAATTAACCTTTTGCTTAGTCATAGAGCATGTTCTAGGCGACTAGGTGCTATATGACGTAAGTAAAAGATTAGTTTTTATTGGTTTTTGTAGGAGGGGGTCATTCTGCATTAACGTTGTTGGTTCAAGGCAATTTGTACAAAAATCTCTTTAAATTGGTTAGTCAAAATAAGAAACGCTTTGTGATATGAGATTGTGAGAAGGGCACCTTAAATGTTATAACCAACCTCATAACTTAGTGCATTTGTGTAACAAACTCTGCTCTCACATTAGGAAACTAAAATAAGGTGTTCCATTGCCACTATGAAAAGTGCATAGAACTTCCTACTTCCCTCAAACAAAACTTAGCAAACATTACTGATTTGCTGTAGCCTTTAGGTTTAGGGGAGAATCAAAAGTATTCCTTCATCCTTCTGCTCTTTTGCTTTGCAAATGTGCTGAATCACCTTGTCCATAGTTTAAAGACTCGAGCAAGCCACGTTTTCCTTACGGCCTCTCAGCACTTTTTTTAAGCATTCACAAAGTCCATCCAGACAGACTCCTAGTATGTAACAAGAAGAGAGAAATACACCATATGAACAATGAAAACCAATAAACATAATAGCTTGATTTGACTCATTGCATTAGTCATGACTTGAGATTTAAGATGACTCCCAATTATATCAAGCTTCTCAAAGAGATTAATCATGATGAACAATAATATTCCAACATGTTCCTATCCCAAATTAGGTACAGAAGAAGTCTACTTTTAGTGTTCTTAGTCCAATGCCAATCATTCATCTCAACTAGTCTATGATAGCATGTCTTATATAATTAGTTAATGAGTATCATGGCATTAAAGTGACAACTTGGCACATATTCTATAAGATAGAATCTTAATCTAAGTACTCAAATTAAAAGTGAGATTATGTCGACACTTTTCGAGTCAATTGTGGATACCAAAAACTCTGAACCATGAGATTAACATCATTCCTAGAAACAAATTTTAAAGGAAAGTGAACATTTTGGTTGTGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACAGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

mRNA sequence

CAAAATGTTGACGAGTGCCCATTAGTGAGATGGCCTGGAGCTTTCATCACTGTCAAGATTCATCCAACGTCCAAGATCTCTTCTGCCAACACTTTCCCACAATCCTTACATACCCATTGGCCCACCGGATTCCGAGTGGATGGATAGAACCTGCAAGAGTGCGATAGCAAAATCACATTTTCTTCTTACAGTACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACAGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

Coding sequence (CDS)

ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACAGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

Protein sequence

MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Homology

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BLAST of CaUC10G184550 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-85
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of CaUC10G184550 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 322.8 bits (826), Expect = 1.8e-84
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQ 60
           MASLSCT S+NLTPRSFNSRPP KL S FLGLQS+LRWVSPVAIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGANYDVKDVDGRTAIDR PNEEIKDFILN SVK A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

[Close]

BLAST of CaUC10G184550 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQ 60
           MASLSCTTSINLTPRSFNSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of CaUC10G184550 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 313.9 bits (803), Expect = 8.3e-82
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLR 60
           MAS+SCT TSINL+P SFNSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of CaUC10G184550 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLR 60
           MAS+SCT TSINL+P S NSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

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BLAST of CaUC10G184550 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-55
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 3   SLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF   +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of CaUC10G184550 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-46
Identity = 104/175 (59.43%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATC 60
           MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of CaUC10G184550 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-46
Identity = 104/175 (59.43%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATC 60
           MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of CaUC10G184550 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of CaUC10G184550 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.6e-84
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQ 60
           MASLSCTTSINLTPRSFNSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of CaUC10G184550 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.6e-84
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQ 60
           MASLSCTTSINLTPRSFNSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of CaUC10G184550 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-82
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLR 60
           MAS+SCT TSINL+P SFNSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of CaUC10G184550 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MASLSCT-TSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLR 60
           MAS+SCT TSINL+P S NSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK 168
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of CaUC10G184550 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-56
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 3   SLSCTTSINLTPRSFNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF   +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:

BLAST of CaUC10G184550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152919.1	6.1e-85	94.05	protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro...	[more]
XP_038903413.1	1.8e-84	94.64	protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]	[more]
XP_008463435.1	1.2e-83	93.45	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei...	[more]
XP_022985270.1	8.3e-82	92.86	protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]	[more]
XP_022932181.1	4.1e-81	92.26	protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]	[more]

BLAST of CaUC10G184550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY88	1.8e-55	65.09	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV...	[more]
A2YLX7	2.0e-46	59.43	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ...	[more]
A3BKF2	2.0e-46	59.43	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT...	[more]

BLAST of CaUC10G184550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309	3.0e-85	94.05	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078...	[more]
A0A5D3BT07	5.6e-84	93.45	Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CJ75	5.6e-84	93.45	protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S...	[more]
A0A6J1JAV9	4.0e-82	92.86	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE...	[more]
A0A6J1EVN2	2.0e-81	92.26	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ...	[more]

BLAST of CaUC10G184550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50900.1	1.3e-56	65.09	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 89..167 e-value: 6.7E-6 score: 27.8
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 90..159
IPR044242	Protein LHCP TRANSLOCATION DEFECT-like	PANTHER	PTHR47317	PROTEIN LHCP TRANSLOCATION DEFECT	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G184550.1	CaUC10G184550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma