CaUC10G181700 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G181700
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Ciama_Chr10: 2703326 .. 2705633 (+)
RNA-Seq Expression	CaUC10G181700
Synteny	CaUC10G181700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCATAATCCCTTCATCCTCCCCTTCCTGTTTTTACGCTCTTGTTCTTTTTGAAAGAAAATGTTTGTCAACTCCAAGTTAGCGCAGAAAAATGATTATTAACCTTGGGACCTTTTCCATGTAATAGTAGATCATAATGAATTGCTTGCATTTTCCAGGGTGGCGAGAAGTTGGGCTATGAGACTGAAGCATTTGCGATATATGATGTTATGAGGTTGTGATGTGAATGTTTATGTATAATTGGTTTGGTATTCTGTTCTTTAGAATCCCGTTCTTTTATTGGGCATTCAAGACATGTTGAGTACTTGTTTAATGTTCATCACTTGGTATTCTTTTTGACTGCAGGTATGTTAAACCTCCTATATTCACATTATGCGTCGGTAATGCCTGGGGAGAAGCAGCACTTCTTCTGGCAGCTGGTGCTCAGGGAAACCGATCTGCGTTGCCCTCATCAACAATAATGATAAAGCAGGTATTCTATCAACAGATATCTTTACAATTATTTTCTCTCTACTCGTTTCCTAACTTCAGAAAGGTGTTAGTATTTTGCTTGGACTTGTCTCACACTACATGTAAGCTGGTCTTTAGAAATACTTTTGTGGAGTTATAGAATTCTTTTGTTTTTTCTCTTTCAATCTGCAGCCAATTGCAAGGTTTCAGGGTCAAGCAACAGACATTGAGCTTGCCAGAAGAGAAGTACGGAATGTGAAGGCAGAACTGGTAAGATCATGTGTACTGGATTTGCCTTCTCTTCATTCTCGTACTCTTGTCTTTGTTTTCTTCCTTCCTGAAATGAGAGGTACGGATGTGCGTTTGCTAAGGTACACTGGAGTTTTCAATTGGCTGGGATTTATTTTTGGATAAGAAACCAAAACCATGTATAAAATAAAGATAGAGGTGATAACCACTTGGGTTCAACTTCAAGCTATGGCCACAACCTACCTATAAGTTACGTTAGCAACCAAATGTAGTAGAGTTAGATGGTTGTCCTATAAAAATTATCAACATGCGACTGCATGTAAGTTGGCTCAGACACTCACACATATAGAATATTTTCAGAAAAATAAAGACAAAGGTTATAGAAAGGGGAAGAACAGGGAGGTGCCTTCCTAGCTCAACTTAGGATTTACAGGCAGGAAGTTCCCTATTTAGATTACCAAGAAAGTAGGGTTAGTTACAACAATGCTGTCAAGAGAGGCACAAGAAGTGGCTACATAATTGAACAAACCAAAAAATCCTCCCAGCTTCTAGAACAGTGTTGAGAAGTTTTAGTTATTTCACAAGCTCACATTCCACCAAAGAACAGCAGCTTGGTTCAGGAGTGTACCATCAATGCCTTCAAAATTTGAAAAGAAGTAATAATTGGTGTATAGGGTTATTTTTAGAAAGTAGAAATTTTACATTGTTCCCTCTAAACAAGCATAGGTAAATGAACTCACAGTTCTTTCCTTTTCAAAATCGATATTGAAGGTTACGCTTTATGCCAAGCATACTGGAAAGTCGACTGAGGAGATTGAAGCCGATATCAGGCGGCCAAAATATTTTAGTCCCAGCGAAGCAGTTGAATATGGTATCATAGATAAGGTACCTGAATTGCAAAGTGTACTAATTTATCATAATATTATTGTGGCTGTGCATTAAATTGAATATCATATCATTTACTTTCATCAGGTACTATACAACGAAAGAGCAACCGAGGACCGGGGAGTTGTATCTGACCTGAAAAAGGCACAACTTATTTAGTGTAGAAAAATGTGGATTGGTAAAATAATACCAAGGTAAAGTTCAATTACAAATCACTGCAGAGATATAGCGGAAGTACTTCTACTTAATTAGTGATTATGCACTCCTTGTTCTGCTTTTACATGGGCTTACATTAACTGTCAGTAGACTTGTAATTCGAGGACATGAACTGAATCTTATAAACCAAATCATCTAAAGAAACATTAACTACCCTCTCCTGTTCTAGCTTTTCTGTTGTAAAATAGTCAAAATCTTCATTTGGGAGTTTCATAGCATCTAATACATTGTTCCTACTTTCTCAGATTGAAGGAAAGTTGTAGCATTCTGTTTTGCTCATCTTCAACCAAGAAACTCATGCCTTTTATGTGCTCTTCTGCTGTATCTTAAAGTTTTTTCCCAATGTGCAGTGAAAATTCTTCCTTCTGGTGTAGAGGAACAATCTTTCAAAGTTTTAATTTATTAACTTGAACACATGGTTTATACGATGAATAAATATTAGTCATTGCTACAAGCAAAGTTTGAAAAGCGGATGTTGATGGAAATGTCAAGGTCTCAATTTTATAGAA

mRNA sequence

CCCATAATCCCTTCATCCTCCCCTTCCTGTTTTTACGCTCTTGTTCTTTTTGAAAGAAAATGTTTGTCAACTCCAAGTTAGCGCAGAAAAATGATTATTAACCTTGGGACCTTTTCCATGTAATAGTAGATCATAATGAATTGCTTGCATTTTCCAGGGTGGCGAGAAGTTGGGCTATGAGACTGAAGCATTTGCGATATATGATGTTATGAGGTATGTTAAACCTCCTATATTCACATTATGCGTCGGTAATGCCTGGGGAGAAGCAGCACTTCTTCTGGCAGCTGGTGCTCAGGGAAACCGATCTGCGTTGCCCTCATCAACAATAATGATAAAGCAGGTATTCTATCAACAGATATCTTTACAATTATTTTCTCTCTACTCGTTTCCTAACTTCAGAAAGGTGTTAGTATTTTGCTTGGACTTGTCTCACACTACATGTAAGCTGCCAATTGCAAGGTTTCAGGGTCAAGCAACAGACATTGAGCTTGCCAGAAGAGAAGTACGGAATGTGAAGGCAGAACTGGTAAATGAACTCACAGTTCTTTCCTTTTCAAAATCGATATTGAAGGTTACGCTTTATGCCAAGCATACTGGAAAGTCGACTGAGGAGATTGAAGCCGATATCAGGCGGCCAAAATATTTTAGTCCCAGCGAAGCAGTTGAATATGGTATCATAGATAAGGTACTATACAACGAAAGAGCAACCGAGGACCGGGGAGTTGTATCTGACCTGAAAAAGGCACAACTTATTTAGTGTAGAAAAATGTGGATTGGTAAAATAATACCAAGATTGAAGGAAAGTTGTAGCATTCTGTTTTGCTCATCTTCAACCAAGAAACTCATGCCTTTTATGTGCTCTTCTGCTGTATCTTAAAGTTTTTTCCCAATGTGCAGTGAAAATTCTTCCTTCTGGTGTAGAGGAACAATCTTTCAAAGTTTTAATTTATTAACTTGAACACATGGTTTATACGATGAATAAATATTAGTCATTGCTACAAGCAAAGTTTGAAAAGCGGATGTTGATGGAAATGTCAAGGTCTCAATTTTATAGAA

Coding sequence (CDS)

ATGAGGTATGTTAAACCTCCTATATTCACATTATGCGTCGGTAATGCCTGGGGAGAAGCAGCACTTCTTCTGGCAGCTGGTGCTCAGGGAAACCGATCTGCGTTGCCCTCATCAACAATAATGATAAAGCAGGTATTCTATCAACAGATATCTTTACAATTATTTTCTCTCTACTCGTTTCCTAACTTCAGAAAGGTGTTAGTATTTTGCTTGGACTTGTCTCACACTACATGTAAGCTGCCAATTGCAAGGTTTCAGGGTCAAGCAACAGACATTGAGCTTGCCAGAAGAGAAGTACGGAATGTGAAGGCAGAACTGGTAAATGAACTCACAGTTCTTTCCTTTTCAAAATCGATATTGAAGGTTACGCTTTATGCCAAGCATACTGGAAAGTCGACTGAGGAGATTGAAGCCGATATCAGGCGGCCAAAATATTTTAGTCCCAGCGAAGCAGTTGAATATGGTATCATAGATAAGGTACTATACAACGAAAGAGCAACCGAGGACCGGGGAGTTGTATCTGACCTGAAAAAGGCACAACTTATTTAG

Protein sequence

MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSFPNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSILKVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQLI

Homology

[Close]

BLAST of CaUC10G181700 vs. NCBI nr
Match: XP_038902969.1 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-54
Identity = 127/182 (69.78%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATDIELAR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDIELARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LYAKH GKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNER TEDRGVVSDLKKAQ
Sbjct: 294 ---LYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERTTEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. NCBI nr
Match: XP_008448778.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis melo] >KAA0041047.1 ATP-dependent Clp protease proteolytic subunit-related protein 4 [Cucumis melo var. makuwa] >TYK12057.1 ATP-dependent Clp protease proteolytic subunit-related protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-53
Identity = 124/182 (68.13%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+ELAR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDVELARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              L+AKH GKSTEEIEADIRRPKYF+PSEAVEYGIIDKVLYNER TEDRGVVSDLKKAQ
Sbjct: 294 ---LFAKHVGKSTEEIEADIRRPKYFTPSEAVEYGIIDKVLYNERTTEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. NCBI nr
Match: XP_022155521.1 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 6.7e-53
Identity = 124/182 (68.13%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIM+KQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGARGNRSALPSSTIMMKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATDIELAR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDIELARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LYAKH GKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNER+ EDRGVVSDLKKAQ
Sbjct: 294 ---LYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSPEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. NCBI nr
Match: XP_004147236.1 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis sativus] >KGN55823.1 hypothetical protein Csa_011232 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 123/182 (67.58%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M YVKPPIFTLCVGNAWGEAALLLAAGA GNRSALPSSTIMIK+                
Sbjct: 174 MSYVKPPIFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKE---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+E+AR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDVEIARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LYAKH GKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ
Sbjct: 294 ---LYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. NCBI nr
Match: KAF3448243.1 (hypothetical protein FNV43_RR08956 [Rhamnella rubrinervis])

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 122/182 (67.03%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLA+GA+GNRSALPSSTIMIKQ                
Sbjct: 180 MRYVKPPIFTLCVGNAWGEAALLLASGAKGNRSALPSSTIMIKQ---------------- 239

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARF+GQATDIELAR+EV+NVKAELVN            
Sbjct: 240 --------------------PIARFEGQATDIELARKEVKNVKAELVN------------ 299

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              L AKH GKSTEE+EADIRRPKYFSPSEAVEYGIIDKVLYNER+TEDRGVVSDLKKAQ
Sbjct: 300 ---LLAKHVGKSTEEVEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDRGVVSDLKKAQ 310

Query: 181 LI 183
           LI
Sbjct: 360 LI 310

[Close]

BLAST of CaUC10G181700 vs. ExPASy Swiss-Prot
Match: Q8LB10 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-49
Identity = 107/182 (58.79%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M YVKPPIFTLCVGNAWGEAALLL AGA+GNRSALPSSTIMIKQ                
Sbjct: 175 MGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ---------------- 234

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+E+AR+E++++K E+V             
Sbjct: 235 --------------------PIARFQGQATDVEIARKEIKHIKTEMVK------------ 294

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LY+KH GKS E+IEAD++RPKYFSP+EAVEYGIIDKV+YNER ++DRGVVSDLKKAQ
Sbjct: 295 ---LYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQ 305

Query: 181 LI 183
           LI
Sbjct: 355 LI 305

[Close]

BLAST of CaUC10G181700 vs. ExPASy Swiss-Prot
Match: A1JNN2 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=clpP PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18
Identity = 59/160 (36.88%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M+++KP + T+C+G A    A LL AGA+G R  LP+S +MI Q                
Sbjct: 94  MQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQ---------------- 153

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P+  FQGQATDIE+  +E+  VK+ + NE           
Sbjct: 154 --------------------PLGGFQGQATDIEIHAKEILKVKSRM-NE----------- 202

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKV 161
              L AKHTGKS EEIE D  R ++ S  EAVEYG++D V
Sbjct: 214 ---LMAKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202

[Close]

BLAST of CaUC10G181700 vs. ExPASy Swiss-Prot
Match: Q60107 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica OX=630 GN=clpP PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18
Identity = 59/160 (36.88%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M+++KP + T+C+G A    A LL AGA+G R  LP+S +MI Q                
Sbjct: 94  MQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMIHQ---------------- 153

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P+  FQGQATDIE+  +E+  VK+ + NE           
Sbjct: 154 --------------------PLGGFQGQATDIEIHAKEILKVKSRM-NE----------- 202

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKV 161
              L AKHTGKS EEIE D  R ++ S  EAVEYG++D V
Sbjct: 214 ---LMAKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202

[Close]

BLAST of CaUC10G181700 vs. ExPASy Swiss-Prot
Match: Q5P161 (ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-18
Identity = 58/163 (35.58%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M+++KP + TLC+G A    + LLAAG +G R  LP+S +MI Q                
Sbjct: 97  MQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMIHQ---------------- 156

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P+  FQGQA+DIE+  RE+  ++A+L NE           
Sbjct: 157 --------------------PLGGFQGQASDIEIHAREILGIRAKL-NE----------- 208

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYN 164
              + AKHTG+  E+IE D  R ++ S ++AVEYGI+DKVL N
Sbjct: 217 ---MLAKHTGQPIEQIEKDTDRDRFMSAADAVEYGIVDKVLTN 208

[Close]

BLAST of CaUC10G181700 vs. ExPASy Swiss-Prot
Match: Q6D827 (ATP-dependent Clp protease proteolytic subunit OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-18
Identity = 59/163 (36.20%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M+++KP + T+C+G A    A LL AGA+G R  LP+S +MI Q                
Sbjct: 94  MQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQ---------------- 153

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P+  FQGQATDIE+  +E+  VKA++ NE           
Sbjct: 154 --------------------PLGGFQGQATDIEIHAKEILKVKAKM-NE----------- 205

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYN 164
              L AKHTG+  E IE D  R ++ S SEAVEYG++D V  N
Sbjct: 214 ---LMAKHTGQPLEAIERDTERDRFLSASEAVEYGLVDSVFTN 205

[Close]

BLAST of CaUC10G181700 vs. ExPASy TrEMBL
Match: A0A5A7THF6 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00710 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.5e-54
Identity = 124/182 (68.13%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+ELAR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDVELARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              L+AKH GKSTEEIEADIRRPKYF+PSEAVEYGIIDKVLYNER TEDRGVVSDLKKAQ
Sbjct: 294 ---LFAKHVGKSTEEIEADIRRPKYFTPSEAVEYGIIDKVLYNERTTEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. ExPASy TrEMBL
Match: A0A1S3BJW8 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103490843 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.5e-54
Identity = 124/182 (68.13%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+ELAR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDVELARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              L+AKH GKSTEEIEADIRRPKYF+PSEAVEYGIIDKVLYNER TEDRGVVSDLKKAQ
Sbjct: 294 ---LFAKHVGKSTEEIEADIRRPKYFTPSEAVEYGIIDKVLYNERTTEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. ExPASy TrEMBL
Match: A0A6J1DRW9 (ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN=LOC111022646 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.2e-53
Identity = 124/182 (68.13%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIM+KQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGARGNRSALPSSTIMMKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATDIELAR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDIELARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LYAKH GKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNER+ EDRGVVSDLKKAQ
Sbjct: 294 ---LYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSPEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. ExPASy TrEMBL
Match: A0A0A0L232 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G017170 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.5e-53
Identity = 123/182 (67.58%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M YVKPPIFTLCVGNAWGEAALLLAAGA GNRSALPSSTIMIK+                
Sbjct: 174 MSYVKPPIFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKE---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+E+AR+EVRNVKAELV             
Sbjct: 234 --------------------PIARFQGQATDVEIARKEVRNVKAELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LYAKH GKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ
Sbjct: 294 ---LYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. ExPASy TrEMBL
Match: D0EX73 (ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica OX=32224 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.2e-53
Identity = 123/182 (67.58%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MRYVKPPIFTLCVGNAWGEAALLLAAGA+GNRSALPSSTIM+KQ                
Sbjct: 174 MRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQ---------------- 233

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATDIELARREVRNVK ELV             
Sbjct: 234 --------------------PIARFQGQATDIELARREVRNVKDELVK------------ 293

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              L+AKH GKSTE+IEADIRRPKYFSPSEAVEYGIIDKVLYNER+TEDRGVVSDLKKAQ
Sbjct: 294 ---LFAKHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDRGVVSDLKKAQ 304

Query: 181 LI 183
           LI
Sbjct: 354 LI 304

[Close]

BLAST of CaUC10G181700 vs. TAIR 10
Match: AT4G17040.1 (CLP protease R subunit 4 )

HSP 1 Score: 197.6 bits (501), Expect = 8.7e-51
Identity = 107/182 (58.79%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M YVKPPIFTLCVGNAWGEAALLL AGA+GNRSALPSSTIMIKQ                
Sbjct: 175 MGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ---------------- 234

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               PIARFQGQATD+E+AR+E++++K E+V             
Sbjct: 235 --------------------PIARFQGQATDVEIARKEIKHIKTEMVK------------ 294

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSDLKKAQ 180
              LY+KH GKS E+IEAD++RPKYFSP+EAVEYGIIDKV+YNER ++DRGVVSDLKKAQ
Sbjct: 295 ---LYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQ 305

Query: 181 LI 183
           LI
Sbjct: 355 LI 305

[Close]

BLAST of CaUC10G181700 vs. TAIR 10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7 )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M+Y++ PI T+C+G A   A+LLLAAGA+G R +LP++T+MI Q                
Sbjct: 110 MQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQ---------------- 169

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P   + GQA DI +  +++  V  + +NE           
Sbjct: 170 --------------------PSGGYSGQAKDITIHTKQIVRV-WDALNE----------- 225

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATE 169
              LY KHTG+  + +  ++ R  + +P EA  +GIID+V+ +ER  E
Sbjct: 230 ---LYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVI-DERPLE 225

[Close]

BLAST of CaUC10G181700 vs. TAIR 10
Match: AT1G12410.1 (CLP protease proteolytic subunit 2 )

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13
Identity = 51/169 (30.18%), Postives = 75/169 (44.38%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           M+ +K P+ T CVG A+  A  LLAAG +G+R A+P S I ++                 
Sbjct: 151 MKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQS---------------- 210

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P    +GQA DI+   +E+  ++  L NEL          
Sbjct: 211 --------------------PAGAARGQADDIQNEAKELSRIRDYLFNEL---------- 268

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATED 170
                AK+TG+  E +  D+ R K F+  EA+EYG+IDK++   R  ED
Sbjct: 271 -----AKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKED 268

[Close]

BLAST of CaUC10G181700 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 52/163 (31.90%), Postives = 71/163 (43.56%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           MR+++P + T+CVG A    A LL+AG +G R +LP+S IMI Q                
Sbjct: 176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQ---------------- 235

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P+   QG  TDI++   E+ + KA L   L          
Sbjct: 236 --------------------PLGGAQGGQTDIDIQANEMLHHKANLNGYL---------- 287

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYN 164
                A HTG+S E+I  D  R  + S  EA EYG+ID V+ N
Sbjct: 296 -----AYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMN 287

[Close]

BLAST of CaUC10G181700 vs. TAIR 10
Match: AT5G45390.1 (CLP protease P4 )

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-10
Identity = 46/161 (28.57%), Postives = 73/161 (45.34%), Query Frame = 0


Query: 1   MRYVKPPIFTLCVGNAWGEAALLLAAGAQGNRSALPSSTIMIKQVFYQQISLQLFSLYSF 60
           ++ V+  + T+ +G A   A+++L AG +G R A+P++ IMI Q                
Sbjct: 141 VQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQ---------------- 200

Query: 61  PNFRKVLVFCLDLSHTTCKLPIARFQGQATDIELARREVRNVKAELVNELTVLSFSKSIL 120
                               P+    GQA D+E+  +EV + K    N +T         
Sbjct: 201 --------------------PLGGASGQAIDVEIQAKEVMHNK----NNVT--------- 250

Query: 121 KVTLYAKHTGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVL 162
             ++ A  T +S E++  DI R +Y SP EAVEYG+ID V+
Sbjct: 261 --SIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVI 250

The following BLAST results are available for this feature:

BLAST of CaUC10G181700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902969.1	2.7e-54	69.78	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
XP_008448778.1	1.8e-53	68.13	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chl...	[more]
XP_022155521.1	6.7e-53	68.13	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
XP_004147236.1	1.1e-52	67.58	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
KAF3448243.1	1.1e-52	67.03	hypothetical protein FNV43_RR08956 [Rhamnella rubrinervis]	[more]

BLAST of CaUC10G181700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB10	1.2e-49	58.79	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
A1JNN2	1.5e-18	36.88	ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica seroty...	[more]
Q60107	1.5e-18	36.88	ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica OX=630...	[more]
Q5P161	3.3e-18	35.58	ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum aromaticum (strain...	[more]
Q6D827	3.3e-18	36.20	ATP-dependent Clp protease proteolytic subunit OS=Pectobacterium atrosepticum (s...	[more]

BLAST of CaUC10G181700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THF6	8.5e-54	68.13	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BJW8	8.5e-54	68.13	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1DRW9	3.2e-53	68.13	ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0L232	5.5e-53	67.58	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
D0EX73	7.2e-53	67.58	ATP-dependent Clp protease proteolytic subunit OS=Eriobotrya japonica OX=32224 P...	[more]

BLAST of CaUC10G181700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17040.1	8.7e-51	58.79	CLP protease R subunit 4	[more]
AT5G23140.1	3.2e-13	30.36	nuclear-encoded CLP protease P7	[more]
AT1G12410.1	4.2e-13	30.18	CLP protease proteolytic subunit 2	[more]
AT1G02560.1	1.2e-12	31.90	nuclear encoded CLP protease 5	[more]
AT5G45390.1	7.4e-10	28.57	CLP protease P4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 139..158 score: 44.62 coord: 10..27 score: 48.06 coord: 31..50 score: 35.5
None	No IPR available	GENE3D	3.90.226.10		coord: 1..169 e-value: 2.2E-33 score: 117.5
None	No IPR available	PANTHER	PTHR10381:SF65	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 1..45 coord: 74..181
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 1..44 e-value: 9.1E-11 score: 42.0 coord: 69..162 e-value: 3.7E-12 score: 46.5
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 1..45
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 74..181
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G181700.1	CaUC10G181700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009368	endopeptidase Clp complex
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity