Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATTCCCCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA
mRNA sequence
ATGCTTATTCCCCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA
Coding sequence (CDS)
ATGCTTATTCCCCAGATACCGTCATTGTTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTAAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA
Protein sequence
MLIPQIPSLFLLREKKFTTRRPSTSTRHCSVRLSPIAENSPLLPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR
Homology
BLAST of CaUC10G181670 vs. NCBI nr
Match:
PHU30032.1 (Photosystem II protein D1 [Capsicum chinense])
HSP 1 Score: 250.8 bits (639), Expect = 9.5e-63
Identity = 133/172 (77.33%), Postives = 139/172 (80.81%), Query Frame = 0
Query: 18 TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAY 77
T PS + C LSP + PL P +LP+QLANQTRAPPR DSSFCSSAY
Sbjct: 5 TRLSPSKESGLC---LSPSVVDHPLGPATDHRLGKILPYQLANQTRAPPRVDSSFCSSAY 64
Query: 78 GVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVR 137
GVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGV
Sbjct: 65 GVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVH 124
Query: 138 SQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK 183
SQKYSHP PLTSIPRASYPFS + GGGA+ RKT IG RDNQARTDDF HVK
Sbjct: 125 SQKYSHPCPLTSIPRASYPFSLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173
BLAST of CaUC10G181670 vs. NCBI nr
Match:
KAF3622464.1 (Flavonol sulfotransferase-like protein [Capsicum annuum])
HSP 1 Score: 247.3 bits (630), Expect = 1.1e-61
Identity = 123/144 (85.42%), Postives = 129/144 (89.58%), Query Frame = 0
Query: 43 LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 102
L +LP+QLANQTRAPPR DSSFCSS YGVLAAVSSCCSPPKGRIELSMRFIVALLIASL
Sbjct: 65 LGKILPYQLANQTRAPPRVDSSFCSSTYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 124
Query: 103 FVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNR 162
FVDKANSELSFIP+HNLY CA YSPGVRSQKYSHP PLTSIPRASYPFS ++GGGA+ R
Sbjct: 125 FVDKANSELSFIPKHNLYLCALYSPGVRSQKYSHPFPLTSIPRASYPFSLNNGGGANPTR 184
Query: 163 KTHIGFRDNQARTDDFRHVKATLY 187
KT IG RDNQA TDDF HVK TLY
Sbjct: 185 KTRIGLRDNQALTDDFHHVKLTLY 208
BLAST of CaUC10G181670 vs. NCBI nr
Match:
PHT34490.1 (hypothetical protein CQW23_26290 [Capsicum baccatum])
HSP 1 Score: 238.4 bits (607), Expect = 4.9e-59
Identity = 127/162 (78.40%), Postives = 130/162 (80.25%), Query Frame = 0
Query: 33 LSPIAENSPL-------LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKG 92
LSP N PL L LLPHQLANQTR PP DSSFC SAY VLA VSS SPPKG
Sbjct: 169 LSPNVVNHPLGLATNHHLGKLLPHQLANQTRDPPWVDSSFCHSAYVVLATVSSFSSPPKG 228
Query: 93 RIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
RIELSMRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSP VRSQKYSHP PLTSIPR
Sbjct: 229 RIELSMRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPR 288
Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
ASYPFS + GGA+ RKTHIG RDNQARTDDF HVK LYR
Sbjct: 289 ASYPFSLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330
BLAST of CaUC10G181670 vs. NCBI nr
Match:
KAF3622520.1 (30S ribosomal protein S12, chloroplastic [Capsicum annuum])
HSP 1 Score: 234.2 bits (596), Expect = 9.2e-58
Identity = 116/141 (82.27%), Postives = 125/141 (88.65%), Query Frame = 0
Query: 43 LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 102
L LLPHQL+NQ +APPR DSSFCSS Y VLAAVSSC SPPKGRIEL++RFIV LLIASL
Sbjct: 326 LGKLLPHQLSNQMQAPPRVDSSFCSSTYEVLAAVSSCFSPPKGRIELALRFIVILLIASL 385
Query: 103 FVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNR 162
FVDKA+SELSFIPRHNLYPCA YSPGVRSQKYSHP PLTSIP+ASYPFS + GGGA+ R
Sbjct: 386 FVDKADSELSFIPRHNLYPCALYSPGVRSQKYSHPCPLTSIPQASYPFSLNDGGGANPTR 445
Query: 163 KTHIGFRDNQARTDDFRHVKA 184
KTHIG RDNQARTDDF HVK+
Sbjct: 446 KTHIGLRDNQARTDDFHHVKS 466
BLAST of CaUC10G181670 vs. NCBI nr
Match:
VVA28225.1 (PREDICTED: conserved [Prunus dulcis])
HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 120/162 (74.07%), Postives = 126/162 (77.78%), Query Frame = 0
Query: 33 LSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKG 92
LSP + PL P LLPHQLANQTRAPPRADSSFCSSAYG LAAVSSCCSPPKG
Sbjct: 142 LSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGELAAVSSCCSPPKG 201
Query: 93 RIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
R +R + KA+SELSFIPRHNL PC+SYSPGVRSQKYSHP+PLTSIPR
Sbjct: 202 RF---LRVTHPSATGTTTSHKADSELSFIPRHNLDPCSSYSPGVRSQKYSHPYPLTSIPR 261
Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
ASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Sbjct: 262 ASYPFSFHHGGKASKNRKTHIRFRDNQARTDDFHHVKVTLYR 300
BLAST of CaUC10G181670 vs. ExPASy TrEMBL
Match:
A0A2G3DGB3 (Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=3 SV=1)
HSP 1 Score: 250.8 bits (639), Expect = 4.6e-63
Identity = 133/172 (77.33%), Postives = 139/172 (80.81%), Query Frame = 0
Query: 18 TTRRPSTSTRHCSVRLSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAY 77
T PS + C LSP + PL P +LP+QLANQTRAPPR DSSFCSSAY
Sbjct: 5 TRLSPSKESGLC---LSPSVVDHPLGPATDHRLGKILPYQLANQTRAPPRVDSSFCSSAY 64
Query: 78 GVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVR 137
GVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGV
Sbjct: 65 GVLAAVSSCCSPPKGRIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVH 124
Query: 138 SQKYSHPHPLTSIPRASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVK 183
SQKYSHP PLTSIPRASYPFS + GGGA+ RKT IG RDNQARTDDF HVK
Sbjct: 125 SQKYSHPCPLTSIPRASYPFSLNDGGGANPTRKTRIGLRDNQARTDDFHHVK 173
BLAST of CaUC10G181670 vs. ExPASy TrEMBL
Match:
A0A2G2VND6 (Uncharacterized protein ycf68 OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=3 SV=1)
HSP 1 Score: 238.4 bits (607), Expect = 2.4e-59
Identity = 127/162 (78.40%), Postives = 130/162 (80.25%), Query Frame = 0
Query: 33 LSPIAENSPL-------LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKG 92
LSP N PL L LLPHQLANQTR PP DSSFC SAY VLA VSS SPPKG
Sbjct: 169 LSPNVVNHPLGLATNHHLGKLLPHQLANQTRDPPWVDSSFCHSAYVVLATVSSFSSPPKG 228
Query: 93 RIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
RIELSMRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSP VRSQKYSHP PLTSIPR
Sbjct: 229 RIELSMRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPRVRSQKYSHPCPLTSIPR 288
Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
ASYPFS + GGA+ RKTHIG RDNQARTDDF HVK LYR
Sbjct: 289 ASYPFSLNDSGGANPTRKTHIGLRDNQARTDDFHHVKVKLYR 330
BLAST of CaUC10G181670 vs. ExPASy TrEMBL
Match:
A0A5E4FJV7 (PREDICTED: conserved OS=Prunus dulcis OX=3755 GN=ALMOND_2B024298 PE=4 SV=1)
HSP 1 Score: 227.3 bits (578), Expect = 5.5e-56
Identity = 120/162 (74.07%), Postives = 126/162 (77.78%), Query Frame = 0
Query: 33 LSPIAENSPLLP-------PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKG 92
LSP + PL P LLPHQLANQTRAPPRADSSFCSSAYG LAAVSSCCSPPKG
Sbjct: 142 LSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGELAAVSSCCSPPKG 201
Query: 93 RIELSMRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPR 152
R +R + KA+SELSFIPRHNL PC+SYSPGVRSQKYSHP+PLTSIPR
Sbjct: 202 RF---LRVTHPSATGTTTSHKADSELSFIPRHNLDPCSSYSPGVRSQKYSHPYPLTSIPR 261
Query: 153 ASYPFSFDHGGGASKNRKTHIGFRDNQARTDDFRHVKATLYR 188
ASYPFSF HGG ASKNRKTHI FRDNQARTDDF HVK TLYR
Sbjct: 262 ASYPFSFHHGGKASKNRKTHIRFRDNQARTDDFHHVKVTLYR 300
BLAST of CaUC10G181670 vs. ExPASy TrEMBL
Match:
A0A2P5Y1J4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 5.1e-54
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0
Query: 43 LPPLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 102
L LLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL
Sbjct: 214 LGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIASL 273
Query: 103 FVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASKNR 162
FVDK S+LSFIPRHNLYPCA YSPGVRSQKYSHP+PLTSIP+ASYPF FDHGGG K
Sbjct: 274 FVDKTGSDLSFIPRHNLYPCALYSPGVRSQKYSHPYPLTSIPQASYPFLFDHGGGQGKIE 333
Query: 163 KTHIG 168
K +G
Sbjct: 334 KLTLG 338
BLAST of CaUC10G181670 vs. ExPASy TrEMBL
Match:
A0A6N2K292 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20803 PE=3 SV=1)
HSP 1 Score: 204.5 bits (519), Expect = 3.8e-49
Identity = 121/203 (59.61%), Postives = 131/203 (64.53%), Query Frame = 0
Query: 1 MLIPQIPSLFLLREKKF-------------TTRRPSTSTRHCSVRLSPIAENSPLLP--- 60
MLIPQIPSL LL E+ ++ RP HC L P + PL P
Sbjct: 1 MLIPQIPSLLLLWERSSRPVGLLPPRGIAPSSFRPLRKIPHCC--LPPSVADHPLGPATD 60
Query: 61 ----PLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRIELSMRFIVALLIA 120
LLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGR
Sbjct: 61 HRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGR-------------- 120
Query: 121 SLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDH-GGGAS 180
F+ + + LYPCASYS VRS+KYSHP+PLTSIPRASYPFSFDH GGGAS
Sbjct: 121 --FLRVTHPSATGNTTSRLYPCASYSLRVRSKKYSHPYPLTSIPRASYPFSFDHGGGGAS 180
Query: 181 KNRKTHIGFRDNQARTDDFRHVK 183
+NRKTHIGFRDNQARTDDF HVK
Sbjct: 181 QNRKTHIGFRDNQARTDDFHHVK 185
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| PHU30032.1 | 9.5e-63 | 77.33 | Photosystem II protein D1 [Capsicum chinense] | [more] |
| KAF3622464.1 | 1.1e-61 | 85.42 | Flavonol sulfotransferase-like protein [Capsicum annuum] | [more] |
| PHT34490.1 | 4.9e-59 | 78.40 | hypothetical protein CQW23_26290 [Capsicum baccatum] | [more] |
| KAF3622520.1 | 9.2e-58 | 82.27 | 30S ribosomal protein S12, chloroplastic [Capsicum annuum] | [more] |
| VVA28225.1 | 1.1e-55 | 74.07 | PREDICTED: conserved [Prunus dulcis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A2G3DGB3 | 4.6e-63 | 77.33 | Photosystem II protein D1 OS=Capsicum chinense OX=80379 GN=BC332_02125 PE=3 SV=1 | [more] |
| A0A2G2VND6 | 2.4e-59 | 78.40 | Uncharacterized protein ycf68 OS=Capsicum baccatum OX=33114 GN=CQW23_26290 PE=3 ... | [more] |
| A0A5E4FJV7 | 5.5e-56 | 74.07 | PREDICTED: conserved OS=Prunus dulcis OX=3755 GN=ALMOND_2B024298 PE=4 SV=1 | [more] |
| A0A2P5Y1J4 | 5.1e-54 | 87.20 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV... | [more] |
| A0A6N2K292 | 3.8e-49 | 59.61 | Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20803 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
