
CaUC10G181400 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTATTTTTCTTAAAAATATAAAAAAATCGAAACTTCATCGCCTCTGTTTTTTGAGAGCCAAAAACCCCCTCTCCCCCTTCGCTTCCTTCTTCCCCTTCCCCTCTGTAAACCCAAAAAAAAGGAAAACCCAACAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAACCCCATTTTATATTATTCAATTTCTAGATCTTAGAAAACAAAAAAAATCAAATCAAAATCAAGTTTTTCTGTACAATACGTTGGAGGTTTCTGTGTAAATCACGAGGCGGAGCTGTTTTTTGTGTGTTCCATTTTAAGGGGAAGAATCTGAAAGGAATTGGTTGTTGGGTTTTTTCTTAGATCGCCATATTGACCTGCATTGTTCAGATCTCTCTGAATTCGGGTTTCAAATCTTTTTTTTTCCTGGTTTGTTTGTAGCTGGCTTTTTTTGGATCTGTTCGCTGATGTTTCGAAGTTTTGGCTTCGTTTTTCCAATTGGGTGTTCGTGAGAGATGACGATGATCTGATTGAATTCGTTTGTGATTTTCGGTTCGCATTGGCATTTGTTTTTTGGGTTTTTCGCCATTGACATTGATTAACCGGAGTCTGAGAATTTCGGGAGGTGGGAGCTTAAGATCTCGAAGAATTATTGAAAATTTTCAGCTATTTGTAATCTTGTAATGTGCCTTAATCTCTGAGGAGGACAAGAATCGTTGTATTTTGTTTCTTGGAGGTTCGAATTTGAAGATGGATTCCTTATCTTCAATCAGCGAGGAACTTGCAGATATCGAGGGACAAATCAATGATATCTTCCGAGCTTTGTCGTAAGGATTCTTTGATTTTGTTTTGTTTTTCCCCCCTTCGCGAACCCTGTTCTAGAAACTGAAGTATTTTCTCTCATTGCTGTTTTTTGAAATGATGGATTTGAATGAACTTTGATCATCATTTGCTGTGAGCTTGTTTTATGAGCTTAAACCTCAACTTTGGTTTTTGTTACATCTACAGCAATGGATTTCAGAAGTTGGAGAAGATTAAGGACTCTACTAGACGGAGTAGACAATTGGAAGAGTTGACAGATAAGATGCGAGAATGCAAGAGGTATATCACATCTAATTCTTTCTTTCTTTCTACTGTAGTTTTCATGGTGTCTTCATATTCTCTACTGGAATTTCTTCCAATAATTCAAGTTCTAGTAGAAGGTGTTTATGAATTTTAATCTCTCCACCTCTTTTGGGCTGTGTTTGGGTGAAGCAAATGTCTTAAAAGACTTTTGCTCTAGGCTCGCCTTGAGACAAGGATCAAACTATTAAGCAGAGGCTTGTTTCTCTATGAATACACAATGAAGCTCAATGACAATTAGAGGAATTATATAAATCTCAGTTTCCTAAAAAGATGTAAAGTTTCCTTGTGTATGGAATGCTGATATATTATAAGTTGTGTAATTCCAACTTTAAGTTTTACTACTTCTACTACCTAGGTTTTGTTTAACATGGATAACAATAAATTTTAAAAGTATGTGGACCCTATTAGTGATAATAATGATTCAATGATGATGTTAAGAATGAACTTTTTATAATCTTTATTTAAGAAAGTGACAATGGATAGGTATGGTGTCCAAATATGTTTATATACTTTTTGTACTTTCACACCATCATTATATTTAGTAATACGTGATTATACATATTCATGATTTGGTTATATATATGCGTGTGTATATTTGTGTGTGTAAAATTATAATTGAGGCGTCATTCTATCTCAAGGCTTACACCTCGCTTGTTTGAGAGGGAACTCATTGAAGCTTGAAATCACTGTTTCTTTATGTTCTATTCTACTCTACCCATTGGTATATGGCAATGGATAAATGGGTAACTATAGCATTTGATATGTATTTTTTTTCTTAGTTAATGATCCTTTGTCATTCATGGATGGAGAACATTGGGCAGTCTGTACAAATATTTTTGTTTCTTCAAGTTTCTGTACTTAGTCAACAATATGCTATTAAACAATTCACCTGTATCATTCATTCATCTTTAATTAAAATTCTTTTCGATTTTGATGATGGTGGCTTATCATTAAAGATATAGTTCCTTTGTCTTGTTCCTGTTTCTTTTGGTAAACACTTTCTGTTTGTTTCTTTTACAGGCTTATTAAAGAGTTTGACAGAGAAGTCAAGGATTTAGAAGGAAGGAACAACTCTAACACTAACAAAATGCTGAGTGAGAAAAAGCAGTCTATGGTGAGATGTGAACTTTGAATTCTTTGTAAAGGAATTTTCCCTTATTATTTCAGAAATATACCTTCTTATTTCTGTTTTGGTAGTGCATTGTTATTAAATATTCTGTATCTTTATGCAGATCAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAGTAAGATTCAATATCTATTATCAACTTTGTTATTTGTTACCTTTAACAGTGAAAGCTAATTCCATGAATATTATTTACATTTCTTCAAAAGGTGTCCAGTATGTCGCGTGTTTCCGAATTGCATATTGCCTTGTCATTAATATAAAATTTTCATTTTCATTTACTAAATATCTTAGTTCTTCTGTCTTAAAACAAATGTATTTGGTTGCTTGTAAGAACGTATTTTCTTAATTTGACTCAGGTTCCTTTCCCTTACCCTTTCCCCACTTAATACAGTTGAAAAGTATTTGCTTTGACTCGGGAGCTTATGTAATGAATGAATGCTATTTTACTTAGTTGAAAACCCTTTCTTTAGTGGGATTTTTGTAAGCTCGGTTTTTTGTATGCCTTCGTATCCTTTGCAATTGTTTCTATAAAAAAAAAAATGAACAAATAACATAACACATCAGTCATCAACATCGGCATCTCTGTTTATATATGAAATGTTTATAATCAATAATGGTTGTTGTTGATGATGATGCAGACATGCAAGCACTCTCGACAACAAGCGTATCGATCTCTTTGATGGACCTGGTGAAAGTTATGGGGAAGAAAATGTGTTGCTAGCTTCAAGTATGCATATTTAGTTTTTGTTATTTAGTTCCTGATTGAAACCACTTCTGAACATTGTTGCTGTAATATATGAGCTGTAGCCTGAAATACTATAATGGGCAAAAAACTGAATATTTTGGTCTAAATGTTGGTCTCAGCATAGGTTTCACATGTTTAAACCGATAGTTAAGTTCGACCAAACCCGGGGTCGCTTGTTACCTATATGATGTCTGCAGGATTTAAACTAAAAAAAAAAGAAGTTGCAATAACTTAACATTACTGCTAATATATGTTATTGCAGATATGACAAATCAACAATTGATTGATAAAGGAAACAGGATGATGGATGAGACTGATGAAGCAATTGAGAGGTCAAAAAAGGTTAGTTTGTCTTTGGAAGATCAAATTTCTGCATTCTTTCTATTCGATTTCAATCGTGACCGATTGGCAATGAACAAAACTGTCAGCTTGTTAGCCGTTGAAATAAAATGATAGGTTGTGGTTCTATGTATGCGATAGGTAGTTCAAGAAACAGTGAATGTGGGAACGGAGACAGCCGCAGCTCTGAAGGCGCAGACAGAGCAAATGAGCAGGATAGTGAACGAGCTTGACTCCATACATTTCTCACTGAAGAAAGCCTCAAAACTTGTGAAGGAATTAGGGAGACAAGTTGCGACCGATAAGTGTATAATGGCCCTACTCTTCATCATTGTCCTTGGTGTCATTGCCATTATCATTGTCAAGGTACCTACCATTTCCTCATTCTTCTTTCTTTCTTTCTATATTTAGCTGAACATTCTGGTTCTGTACTCCTTCTCCTTAGCTGGTGAATCCAAATAACAAGGACATTCGGGACATCCCGGGGCTGGCACCGCCCGTTCAGAGTCGAAAACTGCTATGGAATTCCGGTTAGAAACCCAAGTTACAAAAAAGAATCATCATCCATATCTGAAACTCACTCACTCTTCTGGGAATGCTCTACACAATTAGCTAGCTATGTGAAATTCTTCTAGCCTTTTGTAGCTTTGTGAGATAATAAGCTCTAATGGGCTGAATGAAGGAAGGAAAGGGAAGGGGTTTGCTGACTTCATTCAAACATAATAGGCAAAAGGAGGGGGGGACAGCTTAGCCAGGTTCTTTCATATACCTATCCATATTCAAAAGTGTTACTCTTTACTTTAAAGCTACAAATTATATTCACTCTCATTGTGTCCTGTCCTATCCTGTCTTTGAGATTTTATTGATTTTTATGTATGGTCCTGTCTTGTATAATGTAATCTTAATCACTCATATATTCTATCATTTTGCATA TTTATTTTTCTTAAAAATATAAAAAAATCGAAACTTCATCGCCTCTGTTTTTTGAGAGCCAAAAACCCCCTCTCCCCCTTCGCTTCCTTCTTCCCCTTCCCCTCTGTAAACCCAAAAAAAAGGAAAACCCAACAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAACCCCATTTTATATTATTCAATTTCTAGATCTTAGAAAACAAAAAAAATCAAATCAAAATCAAGTTTTTCTGTACAATACGTTGGAGGTTTCTGTGTAAATCACGAGGCGGAGCTGTTTTTTGTGTGTTCCATTTTAAGGGGAAGAATCTGAAAGGAATTGGTTGTTGGGTTTTTTCTTAGATCGCCATATTGACCTGCATTGTTCAGATCTCTCTGAATTCGGGTTTCAAATCTTTTTTTTTCCTGGTTTGTTTGTAGCTGGCTTTTTTTGGATCTGTTCGCTGATGTTTCGAAGTTTTGGCTTCGTTTTTCCAATTGGGTGTTCGTGAGAGATGACGATGATCTGATTGAATTCGTTTGTGATTTTCGGTTCGCATTGGCATTTGTTTTTTGGGTTTTTCGCCATTGACATTGATTAACCGGAGTCTGAGAATTTCGGGAGGTGGGAGCTTAAGATCTCGAAGAATTATTGAAAATTTTCAGCTATTTGTAATCTTGTAATGTGCCTTAATCTCTGAGGAGGACAAGAATCGTTGTATTTTGTTTCTTGGAGGTTCGAATTTGAAGATGGATTCCTTATCTTCAATCAGCGAGGAACTTGCAGATATCGAGGGACAAATCAATGATATCTTCCGAGCTTTGTCCAATGGATTTCAGAAGTTGGAGAAGATTAAGGACTCTACTAGACGGAGTAGACAATTGGAAGAGTTGACAGATAAGATGCGAGAATGCAAGAGGCTTATTAAAGAGTTTGACAGAGAAGTCAAGGATTTAGAAGGAAGGAACAACTCTAACACTAACAAAATGCTGAGTGAGAAAAAGCAGTCTATGATCAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAACATGCAAGCACTCTCGACAACAAGCGTATCGATCTCTTTGATGGACCTGGTGAAAGTTATGGGGAAGAAAATGTGTTGCTAGCTTCAAATATGACAAATCAACAATTGATTGATAAAGGAAACAGGATGATGGATGAGACTGATGAAGCAATTGAGAGGTCAAAAAAGGTAGTTCAAGAAACAGTGAATGTGGGAACGGAGACAGCCGCAGCTCTGAAGGCGCAGACAGAGCAAATGAGCAGGATAGTGAACGAGCTTGACTCCATACATTTCTCACTGAAGAAAGCCTCAAAACTTGTGAAGGAATTAGGGAGACAAGTTGCGACCGATAAGTGTATAATGGCCCTACTCTTCATCATTGTCCTTGGTGTCATTGCCATTATCATTGTCAAGCTGGTGAATCCAAATAACAAGGACATTCGGGACATCCCGGGGCTGGCACCGCCCGTTCAGAGTCGAAAACTGCTATGGAATTCCGGTTAGAAACCCAAGTTACAAAAAAGAATCATCATCCATATCTGAAACTCACTCACTCTTCTGGGAATGCTCTACACAATTAGCTAGCTATGTGAAATTCTTCTAGCCTTTTGTAGCTTTGTGAGATAATAAGCTCTAATGGGCTGAATGAAGGAAGGAAAGGGAAGGGGTTTGCTGACTTCATTCAAACATAATAGGCAAAAGGAGGGGGGGACAGCTTAGCCAGGTTCTTTCATATACCTATCCATATTCAAAAGTGTTACTCTTTACTTTAAAGCTACAAATTATATTCACTCTCATTGTGTCCTGTCCTATCCTGTCTTTGAGATTTTATTGATTTTTATGTATGGTCCTGTCTTGTATAATGTAATCTTAATCACTCATATATTCTATCATTTTGCATA ATGGATTCCTTATCTTCAATCAGCGAGGAACTTGCAGATATCGAGGGACAAATCAATGATATCTTCCGAGCTTTGTCCAATGGATTTCAGAAGTTGGAGAAGATTAAGGACTCTACTAGACGGAGTAGACAATTGGAAGAGTTGACAGATAAGATGCGAGAATGCAAGAGGCTTATTAAAGAGTTTGACAGAGAAGTCAAGGATTTAGAAGGAAGGAACAACTCTAACACTAACAAAATGCTGAGTGAGAAAAAGCAGTCTATGATCAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAACATGCAAGCACTCTCGACAACAAGCGTATCGATCTCTTTGATGGACCTGGTGAAAGTTATGGGGAAGAAAATGTGTTGCTAGCTTCAAATATGACAAATCAACAATTGATTGATAAAGGAAACAGGATGATGGATGAGACTGATGAAGCAATTGAGAGGTCAAAAAAGGTAGTTCAAGAAACAGTGAATGTGGGAACGGAGACAGCCGCAGCTCTGAAGGCGCAGACAGAGCAAATGAGCAGGATAGTGAACGAGCTTGACTCCATACATTTCTCACTGAAGAAAGCCTCAAAACTTGTGAAGGAATTAGGGAGACAAGTTGCGACCGATAAGTGTATAATGGCCCTACTCTTCATCATTGTCCTTGGTGTCATTGCCATTATCATTGTCAAGCTGGTGAATCCAAATAACAAGGACATTCGGGACATCCCGGGGCTGGCACCGCCCGTTCAGAGTCGAAAACTGCTATGGAATTCCGGTTAG MDSLSSISEELADIEGQINDIFRALSNGFQKLEKIKDSTRRSRQLEELTDKMRECKRLIKEFDREVKDLEGRNNSNTNKMLSEKKQSMIKELNSYVALKKQHASTLDNKRIDLFDGPGESYGEENVLLASNMTNQQLIDKGNRMMDETDEAIERSKKVVQETVNVGTETAAALKAQTEQMSRIVNELDSIHFSLKKASKLVKELGRQVATDKCIMALLFIIVLGVIAIIIVKLVNPNNKDIRDIPGLAPPVQSRKLLWNSG Homology
BLAST of CaUC10G181400 vs. NCBI nr
Match: XP_038903142.1 (novel plant SNARE 11 isoform X1 [Benincasa hispida]) HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131 Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0
BLAST of CaUC10G181400 vs. NCBI nr
Match: XP_008448761.1 (PREDICTED: novel plant SNARE 11 [Cucumis melo] >XP_008448762.1 PREDICTED: novel plant SNARE 11 [Cucumis melo] >TYK12073.1 putative plant SNARE 11 [Cucumis melo var. makuwa]) HSP 1 Score: 477.2 bits (1227), Expect = 8.8e-131 Identity = 256/261 (98.08%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. NCBI nr
Match: KGN55810.1 (hypothetical protein Csa_010107 [Cucumis sativus]) HSP 1 Score: 474.2 bits (1219), Expect = 7.4e-130 Identity = 253/261 (96.93%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. NCBI nr
Match: XP_031738015.1 (novel plant SNARE 11 isoform X1 [Cucumis sativus]) HSP 1 Score: 471.9 bits (1213), Expect = 3.7e-129 Identity = 252/260 (96.92%), Postives = 257/260 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. NCBI nr
Match: XP_031738016.1 (novel plant SNARE 11 isoform X2 [Cucumis sativus]) HSP 1 Score: 471.9 bits (1213), Expect = 3.7e-129 Identity = 252/260 (96.92%), Postives = 257/260 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy Swiss-Prot
Match: Q944A9 (Novel plant SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=NPSN11 PE=1 SV=2) HSP 1 Score: 397.9 bits (1021), Expect = 8.9e-110 Identity = 205/263 (77.95%), Postives = 245/263 (93.16%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy Swiss-Prot
Match: Q9LRP1 (Novel plant SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=NPSN13 PE=1 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 1.4e-91 Identity = 179/262 (68.32%), Postives = 220/262 (83.97%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy Swiss-Prot
Match: Q9LNH6 (Novel plant SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=NPSN12 PE=2 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 1.3e-89 Identity = 176/262 (67.18%), Postives = 218/262 (83.21%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy Swiss-Prot
Match: P58200 (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus OX=10116 GN=Vti1b PE=1 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 5.9e-05 Identity = 49/225 (21.78%), Postives = 106/225 (47.11%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy Swiss-Prot
Match: O88384 (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus OX=10090 GN=Vti1b PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04 Identity = 55/227 (24.23%), Postives = 105/227 (46.26%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy TrEMBL
Match: A0A1S3BLC3 (novel plant SNARE 11 OS=Cucumis melo OX=3656 GN=LOC103490829 PE=4 SV=1) HSP 1 Score: 477.2 bits (1227), Expect = 4.2e-131 Identity = 256/261 (98.08%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy TrEMBL
Match: A0A5D3CJJ3 (Putative plant SNARE 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00890 PE=4 SV=1) HSP 1 Score: 477.2 bits (1227), Expect = 4.2e-131 Identity = 256/261 (98.08%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy TrEMBL
Match: A0A0A0L1D9 (t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G017040 PE=4 SV=1) HSP 1 Score: 474.2 bits (1219), Expect = 3.6e-130 Identity = 253/261 (96.93%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy TrEMBL
Match: A0A6J1HN11 (novel plant SNARE 11-like OS=Cucurbita maxima OX=3661 GN=LOC111465090 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 3.7e-127 Identity = 245/261 (93.87%), Postives = 257/261 (98.47%), Query Frame = 0
BLAST of CaUC10G181400 vs. ExPASy TrEMBL
Match: A0A6J1E6L5 (novel plant SNARE 11-like OS=Cucurbita moschata OX=3662 GN=LOC111431082 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 3.7e-127 Identity = 245/261 (93.87%), Postives = 257/261 (98.47%), Query Frame = 0
BLAST of CaUC10G181400 vs. TAIR 10
Match: AT2G35190.1 (novel plant snare 11 ) HSP 1 Score: 397.9 bits (1021), Expect = 6.3e-111 Identity = 205/263 (77.95%), Postives = 245/263 (93.16%), Query Frame = 0
BLAST of CaUC10G181400 vs. TAIR 10
Match: AT3G17440.1 (novel plant snare 13 ) HSP 1 Score: 337.4 bits (864), Expect = 1.0e-92 Identity = 179/262 (68.32%), Postives = 220/262 (83.97%), Query Frame = 0
BLAST of CaUC10G181400 vs. TAIR 10
Match: AT1G48240.1 (novel plant snare 12 ) HSP 1 Score: 330.9 bits (847), Expect = 9.4e-91 Identity = 176/262 (67.18%), Postives = 218/262 (83.21%), Query Frame = 0
BLAST of CaUC10G181400 vs. TAIR 10
Match: AT3G17440.2 (novel plant snare 13 ) HSP 1 Score: 255.8 bits (652), Expect = 3.9e-68 Identity = 137/212 (64.62%), Postives = 174/212 (82.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|