CaUC09G178480 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G178480
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	ankyrin repeat-containing protein NPR4-like
Location	Ciama_Chr09: 37742891 .. 37743250 (-)
RNA-Seq Expression	CaUC09G178480
Synteny	CaUC09G178480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACACAATAGCCCAACGTCAAGCCATTATCCTCTCCTTTGCAAGTCCAAGGCTAGCCTCGCACTGTCTACTATTAATTCCTCTTTTCACCATCCTTCAAGCACTGTCTTAACTGTGAAGCTAGACGATAAGAACTACTCGCCATGGAGAGAATGGTTCTTGCTGTGCTCAAACGACAAAAAGGTAGATGGCTAGGTACTTGGGACAAAGGCATCACCATCCAACACCTCACACCAGCTGAAGGAGCATCTGCGAGTTGATGGATTTCGGTTCAATCATGCATCATGGGACTGCAATGACATAAATTTCAAGACATCTAGAGTTGTATGGAAAGCAATTAAAGATGTGTATGGGAATTCG

mRNA sequence

CTACACAATAGCCCAACGTCAAGCCATTATCCTCTCCTTTGCAAGTCCAAGGCTAGCCTCGCACTGTCTACTATTAATTCCTCTTTTCACCATCCTTCAAGCACTGTCTTAACTGTGAAGCTAGACGATAAGAACTACTCGCCATGGAGAGAATGGTTCTTGCTGTGCTCAAACGACAAAAAGGTACTTGGGACAAAGGCATCACCATCCAACACCTCACACCAGCTGAAGGAGCATCTGCGAGTTGATGGATTTCGGTTCAATCATGCATCATGGGACTGCAATGACATAAATTTCAAGACATCTAGAGTTGTATGGAAAGCAATTAAAGATGTGTATGGGAATTCG

Coding sequence (CDS)

CTACACAATAGCCCAACGTCAAGCCATTATCCTCTCCTTTGCAAGTCCAAGGCTAGCCTCGCACTGTCTACTATTAATTCCTCTTTTCACCATCCTTCAAGCACTGTCTTAACTGTGAAGCTAGACGATAAGAACTACTCGCCATGGAGAGAATGGTTCTTGCTGTGCTCAAACGACAAAAAGGTACTTGGGACAAAGGCATCACCATCCAACACCTCACACCAGCTGAAGGAGCATCTGCGAGTTGATGGATTTCGGTTCAATCATGCATCATGGGACTGCAATGACATAAATTTCAAGACATCTAGAGTTGTATGGAAAGCAATTAAAGATGTGTATGGGAATTCG

Protein sequence

LHNSPTSSHYPLLCKSKASLALSTINSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKKVLGTKASPSNTSHQLKEHLRVDGFRFNHASWDCNDINFKTSRVVWKAIKDVYGNS

Homology

[Close]

BLAST of CaUC09G178480 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-09
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 26  NSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKK----VLGTKASP-----SNTSHQL 85
           N+SF HP  TVLTVKLDDKNYS WR   L     +K    VLGT A P     S  +   
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 86  KEHLRVD--------------GFRFNH--ASWDCNDINFKTSRVVWKAIKDVYG 115
            +HL+V+              G+ F     S  C+ ++F++SR VWKA++D+YG
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYG 144

[Close]

BLAST of CaUC09G178480 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-09
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 26  NSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKK----VLGTKASP-----SNTSHQL 85
           N+SF HP  TVLTVKLDDKNYS WR   L     +K    VLGT A P     S  +   
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 86  KEHLRVD--------------GFRFNH--ASWDCNDINFKTSRVVWKAIKDVYG 115
            +HL+V+              G+ F     S  C+ ++F++SR VWKA++D+YG
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYG 144

[Close]

BLAST of CaUC09G178480 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04
Identity = 42/125 (33.60%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 16  SKASLALSTINSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKK----VLGTKASPS- 75
           S+ +   S IN SF HP ST LTVKLDDKNY+ W+   L     +K    VL TK  PS 
Sbjct: 14  SQQATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSK 73

Query: 76  -------------NTSHQLKEHLRVD----GFRFNH--ASWDCNDINFKTSRVVWKAIKD 117
                          +   +E   VD    G+ F     S   + +N +TS  VW A++ 
Sbjct: 74  YTTTTSDTGMLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAADVVNLQTSNEVWTALEM 133

[Close]

BLAST of CaUC09G178480 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 26  NSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKK----VLGTKASP-----SNTSHQL 85
           N+SF HP  TVLTVKLDDKNYS WR   L     +K    VLGT A P     S  +   
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 86  KEHLRVD--------------GFRFNH--ASWDCNDINFKTSRVVWKAIKDVYG 115
            +HL+V+              G+ F     S  C+ ++F++SR VWKA++D+YG
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYG 144

[Close]

BLAST of CaUC09G178480 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 26  NSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKK----VLGTKASP-----SNTSHQL 85
           N+SF HP  TVLTVKLDDKNYS WR   L     +K    VLGT A P     S  +   
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 86  KEHLRVD--------------GFRFNH--ASWDCNDINFKTSRVVWKAIKDVYG 115
            +HL+V+              G+ F     S  C+ ++F++SR VWKA++D+YG
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREVWKALEDLYG 144

[Close]

BLAST of CaUC09G178480 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 42/125 (33.60%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 16  SKASLALSTINSSFHHPSSTVLTVKLDDKNYSPWREWFLLCSNDKK----VLGTKASPS- 75
           S+ +   S IN SF HP ST LTVKLDDKNY+ W+   L     +K    VL TK  PS 
Sbjct: 14  SQQATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSK 73

Query: 76  -------------NTSHQLKEHLRVD----GFRFNH--ASWDCNDINFKTSRVVWKAIKD 117
                          +   +E   VD    G+ F     S   + +N +TS  VW A++ 
Sbjct: 74  YTTTTSDTGMLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAADVVNLQTSNEVWTALEM 133

The following BLAST results are available for this feature:

BLAST of CaUC09G178480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157748.1	6.4e-09	40.35	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022157750.1	6.4e-09	40.35	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022143579.1	8.1e-04	33.60	ankyrin repeat-containing protein NPR4-like [Momordica charantia]	[more]

BLAST of CaUC09G178480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G178480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU77	3.1e-09	40.35	uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTZ7	3.1e-09	40.35	uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CPQ7	3.9e-04	33.60	ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of CaUC09G178480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G178480.1	CaUC09G178480.1	mRNA