CaUC09G178250 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGCCTAGCTGGACTTTTGCCTGGTTTAATGACGCTGAATATTTTGATTGATTGGCTTTGTAATGTGAATCGGGTTAAAGAAGGTCTTGTGGCCATGGCAGGGATTTTAAGGAGTGGTTACATTCCTGATACCGTGACATATACGACCTTGATTAAGGGCTTGTGTATGGAGCCTAGGATTAATGAAGTGCCAAAGTTATTTATGAGAATGCAAAAGTTAGGTTGTAGCCCAATGTGGTTACTTATGGGACTTTAGTGAAGGGACTCTATCGAACGTGGAATATTAACATTGCACTTAAGTTGCATCAAGGAATGCTCCATGAGACTAGTCGATATGGGATTAATTGTAAGCCTAATGACATTTGGTATTCTATCATTATAGACGGACTTTGTAAGGATTGACGAAAATACAAGGCAAGAGAACTTTTTGAGGAAATGAAAGCTCATGGAATGATTCCCGATGTTTTTTCTTATAGCTCCTTGATTCGTGGATTTTGCTTAGGTGGAAAGTGGGAGGAAACTAAACGTTTGTTCAATGAGACGGTGGATCAAAGTGTTCAACCAAATATGGTCACAAGTCAGGAAAGATTATCAAGGCTAAGGAGTTGCTAGAAGTGATGCTTCGAGAGATGTATTGTTCCAAATTTGTTTACTTATCATTCACTAATTGAGAGGTTTTGTTTGGTTGGTGACCTGTTGGTGAATAGCTACACTATGCTAATCAATGTGTATTGTAAAACTTCGAAGGTGGAAGAAGCAAAGAAGCTTTACAATGAAATGCTTCAAGTGAGAATGAGGCCAAGTGCGAGAACATATGGTGTCTTGTTAAAAGGTCTTTTTCAGGTAGGCAATGTTAGTGATGCAAAAATGCTATTTGGTGTCTTTAAAGCTTATGGTATTGCGCAAATTTATCTATATATGGCATTTTCTTAAATGGGATGTGTAAGAATGGTTGTTTATTGGGAGCGATAGAACTTTTTAATGACTTGAAATCATACAACTTGAAATTGGACATTGAAGCCTTTAATCGTGTAATTGATGGCCTTTGTAAAGCAGGAAAACTTGAAATGGGAGCTTTTTGAAAAACTGTCCCACTAAGGGGTTCAATTAGATGTTGCTACTTATTCCATTATGATCCATGGGCTTTGTAAGGAGGGACAAGTAGAGAAGGTAGATGGAAGAAAATGGTTGTACATAATTACTTATAATACACTCTTGCATGGTTTCTGCAAGGGTAATAAATCAAAGGAGGTAATTGAAATTCTTCATAGGATGGTTCAGAAGGATGTGTCGCCAAGTGTCATCACTTACACCATAGTCGTTGGCATGCTTTCCAAAAATGAAAAATATCAAGAATGTCTAGACTTACTTCCAAGGTATCCTGTCCAAGAGTGTCAGTTGATAGAACACTTACTGATAAACTCATTAAGAGCTATACGACTTGAAAATTCCTAATCAGCCTCAAGAAAGAACAACACATCATTTCGTGGACTCAATAAGTGTCCTCTTCTTTTCCCTCTATATTCCACTTTTCATTCTTGTAGATTGCTTGCCTTTATAGGTCCTTTTGTTGTGATTTCTGATATGCTTTATTAGAGTTTCAGGAGGATAATAATCATAAAGAGTAGATAAACCAACATTGAACAAATAAGTATGTCCTCTTAGTCATCGTATTTGTTCTTATCTTCTTCCTTGTTTATCTAATTTAGTTTATTGAAATTGTGACGGATTGTTAATGTAATCAACTGTGCAATTGGGCAATCATTGCATCCAAATTGAGTGATAAGACAACAAGACAATGTAGAAGAAGGTAACTGAAAGGATAAAAACAATGCTAACTATTAGATTTAAAGGATTATTGTTGTATTCTGTTACAACCAATAGGACATTTAAAGCAAGGAATAGAATTTTGAATTCTGGAGTGTTGTTTAGTCATGGTACTTACGGTATAAAGAGTTAATAAGGCATGAAATTATTGTTTTTTAGTTGTGAGGTCCACAAATTCCTTAGACCTAACTAATACAACCAATTCTCTTTTCCTTTGGGTTGATAGCGTTTCACTTATGTGAATGGCTTATGAGAATTGCTATTTCAAAAGGATAGACGTAAGTGAATTTTCATTTTAAGGAAAGGAGATGGTCTCTAGAGGATTTGTTTTGATTATTCCCCCAATTTTTAAGACCGGAAAATCCATGAAAAGATAATATGATGTGAGAAAAAAGAAAATAGAATGATTTTGAATTCTCTAAATGCATGATTGAGAGTGATTTTGAAAAAGCTAAAATCATTTGTCATGTTCAAAATTATTTAGATATATGTCTTTAAACTTTTCAATATCAAATTGGTCATTATTTCCTCGACTTTAGAACAAATTGATGATGTGGCTCTAAGTATATAAGTGTACATTTGATAAAATGTTAGTAAACTGTCTCTTTAAAATTTGATAAACACTTTGAAGGGCTTTTTAGCAGTATTGTAAAGTGTTTTTAATTAAATTAAAGATATGGAAGGCTTTTAGGCTTAGCCATTAAACTTTCACCTTTATTAAAGGCAGTTTCACATTAATATTGAATTGTTGGTGATTTTTGAAGGGTAGATCTGTAAATAATTTAAAAATGGACTTTTAATTATTCACTCTATCGAAATAAAAATTTTAAAAGCATTTTTTGAAACTAAAAACCTTAAAATCACTTTTTGAAACTATTTTCATGAGCTCACTTTAAAGATATACGTGGAAGTGATTTTAGAATGGTTATAAACATTTGTCAGGTTCAAAATTATTACAAAATATGTCTTTAATCATTCAATATTATCATTGTTATTTGCTCTCAACTATATAATAAATTGATGACATGACTTTGAATACATATTCTAACTTGATGATATAGATGTGTATTGAATTGAAATACAAAGGTTAGCTAAAGTAATACATAATGAATTTCAAATATGACTTCAATACGACTCAATTATTGCCCTAAAAAATAGAGATTTCAATCACATTAATTAAAGTTGATTCTATACTAAGGAAAGAGGAAAACAAGGAGGAGATGGGGCAATCACAAAAGAAGAGACAAGCCAACATGAGTTTAACAAGCATAAATTATATACTTTTAGAATGTTCAAATCTCTGCCCGAGGGACTCAAAAATAAATAAATAAAGAGAAGCATAGCCAAAGAAAAAGAGAAGCATAGCCAAAGAAGAAAACCCAAAATCTAGGGGTGTTCAAATGACTCGAAGAACCCAAACTACCCAACCCGAATTATAAGGGTTGGGTTGGGTTAGATTTATTTTTTTTTTATTATTATTATTATTTTTTTTTTTTTGTATTTTTTGGGTTAGGTTGAGTCTAGAGTTGCAGTTTGAAAAATTCGAGTTGACCCAACCCAACCCATATATATATATATATATATATATATATATATATATATATATATATATATATTATAAGTTCTCATTTTTTGGTTCTTAAGGTCTCCCAATTCTCTACTCTTAACTTGAAGCTTTTGTCGCCTACCTCCTTGGTGCTAATTGTCGTCATTTGTTTGCTCTTTACCGCTCGTTTGCCACTCAGATTTAGTTCTCTACCGTTCAACTACTGTCGCAGTAACATCGTTCGTCTACTGTCCATTCGTTTGTCGCTTGATCCATCGATTCATTCGCAACTTCATTCATGTATTTTTATTTTTTTATTTTTTTTTAGTTTTAGACCTACACTTATATCTTGTGCTTCTTCATTCTGACTACATTGATCGTGGATCAATGTGTTTTATAATTGCTACTATATTTCTAAATTTACCAAAAAAACAAGGATAAAAGGGGAAAAAACACACACACAACCCGACAACCTAACCCAACCCAACCCGAATTTTAAAGGTTGGGTTGGGTTGGGTACCTTATCCAGGTAGCTATCTTGTCCAATCCGAATTTTTTAGTTAGTCCAAAATATGCCTCCAACCCAACCCATGTACACCCCCTACCAAAATCCGCCAAAATATTTACAAACCATATCAATGAAACACATCGAACCATGAGCAATATGGGCACATATCTTTATTATATGTGGAGCATATCAAAGGAACATGAAAACAAGACTCATGTTGCTTGGTCTCGAGCCTTCGTCTTGTATCATTTTCTTGTGTGATTGTTGAATAATCGAAACCTTTTTTTTTTTAACTAGGTGCCTGTAACTCCGAGTTCCCTTTGAGAACTAAAGTTGTAGAGTAGCCTGCTTCTTCTTCGAGCAAGCTATTTTTCCAAAGTAGTTAGCTTCTAATTTGAGCATCCTCGAATAGTAGCTTGAACCCTGACATGTATCATACTGAGAGCCATGACAATTTTACCAACGACCAAACTTCATTTATACGAGAAAAACTACTAGAACTTCTCCACCCTCTCCACATGCAATGAGCATGACATCAACATTACCACTTGACCTTACAAAAATTTAGCAGTCTAACAAACTTATGAGATATATGACATCTTCATTATGTGATGACCAAAAACCTCAAGGTCACTATGCCTTTATACTACTATCCCCTCTAAAAGAATAATGAATCTCGCTAACAGCCATATATAAGTGAGGTTTTTGTCAAAGCAAATTTCATCACAGGAACTCAAAAATTTCATCGTGA ATGCGCCTAGCTGGACTTTTGCCTGGTTTAATGACGCTGAATATTTTGATTGATTGGCTTTGTAATGTGAATCGGGTTAAAGAAGGTCTTGTGGCCATGGCAGGGATTTTAAGGAGTGGTTACATTCCTGATACCGTGACATATACGACCTTGATTAAGGGCTTGTTGAAGGGACTCTATCGAACGTGGAATATTAACATTGCACTTAAGTTGCATCAAGGAATGCTCCATGAGACTAGTCGATATGGGATTAATTGTGGAAAGTGGGAGGAAACTAAACGTTTGTTCAATGAGACGGTGGATCAAAGTGTTCAACCAAATATGGTCACAAGTCAGGAAAGCTACACTATGCTAATCAATGTGTATTGTAAAACTTCGAAGGTGGAAGAAGCAAAGAAGCTTTACAATGAAATGCTTCAAGTGAGAATGAGGCCAAGTGCGAGAACATATGGTGTCTTGTTAAAAGGTCTTTTTCAGGTAGGCAATGTTAGTGATGCAAAAATGCTATTTGGTGTCTTTAAAGCTTATGATGTTGCTACTTATTCCATTATGATCCATGGGCTTTGTAAGGAGGGACAAGTAGAGAAGGTAGATGGAAGAAAATGGTTGTACATAATTACTTATAATACACTCTTGCATGGTTTCTGCAAGGGTAATAAATCAAAGGAGGTAATTGAAATTCTTCATAGGATGGTTCAGAAGGATGTGTCGCCAAGTGTCATCACTTACACCATAGTCGTTGGCATGCTTTCCAAAAATGAAAAATATCAAGAATGTCTAGACTTACTTCCAAGGTATCCTGTCCAAGAGTGTGCCTGTAACTCCGAGTTCCCTTTGAGAACTAAAGTTGTAGAGAACTCAAAAATTTCATCGTGA ATGCGCCTAGCTGGACTTTTGCCTGGTTTAATGACGCTGAATATTTTGATTGATTGGCTTTGTAATGTGAATCGGGTTAAAGAAGGTCTTGTGGCCATGGCAGGGATTTTAAGGAGTGGTTACATTCCTGATACCGTGACATATACGACCTTGATTAAGGGCTTGTTGAAGGGACTCTATCGAACGTGGAATATTAACATTGCACTTAAGTTGCATCAAGGAATGCTCCATGAGACTAGTCGATATGGGATTAATTGTGGAAAGTGGGAGGAAACTAAACGTTTGTTCAATGAGACGGTGGATCAAAGTGTTCAACCAAATATGGTCACAAGTCAGGAAAGCTACACTATGCTAATCAATGTGTATTGTAAAACTTCGAAGGTGGAAGAAGCAAAGAAGCTTTACAATGAAATGCTTCAAGTGAGAATGAGGCCAAGTGCGAGAACATATGGTGTCTTGTTAAAAGGTCTTTTTCAGGTAGGCAATGTTAGTGATGCAAAAATGCTATTTGGTGTCTTTAAAGCTTATGATGTTGCTACTTATTCCATTATGATCCATGGGCTTTGTAAGGAGGGACAAGTAGAGAAGGTAGATGGAAGAAAATGGTTGTACATAATTACTTATAATACACTCTTGCATGGTTTCTGCAAGGGTAATAAATCAAAGGAGGTAATTGAAATTCTTCATAGGATGGTTCAGAAGGATGTGTCGCCAAGTGTCATCACTTACACCATAGTCGTTGGCATGCTTTCCAAAAATGAAAAATATCAAGAATGTCTAGACTTACTTCCAAGGTATCCTGTCCAAGAGTGTGCCTGTAACTCCGAGTTCCCTTTGAGAACTAAAGTTGTAGAGAACTCAAAAATTTCATCGTGA MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLYRTWNINIALKLHQGMLHETSRYGINCGKWEETKRLFNETVDQSVQPNMVTSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKMLFGVFKAYDVATYSIMIHGLCKEGQVEKVDGRKWLYIITYNTLLHGFCKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECLDLLPRYPVQECACNSEFPLRTKVVENSKISS Homology
BLAST of CaUC09G178250 vs. NCBI nr
Match: XP_038896203.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida]) HSP 1 Score: 271.9 bits (694), Expect = 6.2e-69 Identity = 190/501 (37.92%), Postives = 215/501 (42.91%), Query Frame = 0
BLAST of CaUC09G178250 vs. NCBI nr
Match: KGN45331.2 (hypothetical protein Csa_015776 [Cucumis sativus]) HSP 1 Score: 251.9 bits (642), Expect = 6.7e-63 Identity = 182/501 (36.33%), Postives = 211/501 (42.12%), Query Frame = 0
BLAST of CaUC09G178250 vs. NCBI nr
Match: XP_011659273.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus] >KAE8646303.1 hypothetical protein Csa_016074 [Cucumis sativus]) HSP 1 Score: 250.8 bits (639), Expect = 1.5e-62 Identity = 181/500 (36.20%), Postives = 216/500 (43.20%), Query Frame = 0
BLAST of CaUC09G178250 vs. NCBI nr
Match: XP_022155826.1 (pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia]) HSP 1 Score: 248.4 bits (633), Expect = 7.4e-62 Identity = 180/503 (35.79%), Postives = 213/503 (42.35%), Query Frame = 0
BLAST of CaUC09G178250 vs. NCBI nr
Match: KAA0059713.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 245.0 bits (624), Expect = 8.2e-61 Identity = 180/501 (35.93%), Postives = 216/501 (43.11%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: P0C7R3 (Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g64583 PE=2 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 7.0e-31 Identity = 89/289 (30.80%), Postives = 147/289 (50.87%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q0WKZ3 (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX=3702 GN=At1g64580 PE=2 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.2e-30 Identity = 87/285 (30.53%), Postives = 142/285 (49.82%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q9LUR2 (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g16710 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.8e-29 Identity = 84/285 (29.47%), Postives = 141/285 (49.47%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2) HSP 1 Score: 120.2 bits (300), Expect = 4.0e-26 Identity = 87/296 (29.39%), Postives = 132/296 (44.59%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25 Identity = 80/285 (28.07%), Postives = 134/285 (47.02%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A6J1DSW3 (pentatricopeptide repeat-containing protein At1g63330-like OS=Momordica charantia OX=3673 GN=LOC111022854 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62 Identity = 180/503 (35.79%), Postives = 213/503 (42.35%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61 Identity = 180/501 (35.93%), Postives = 216/501 (43.11%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A6J1GP31 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111456184 PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60 Identity = 177/500 (35.40%), Postives = 214/500 (42.80%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60 Identity = 180/501 (35.93%), Postives = 212/501 (42.32%), Query Frame = 0
BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60 Identity = 180/501 (35.93%), Postives = 212/501 (42.32%), Query Frame = 0
BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G64583.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 136.0 bits (341), Expect = 5.0e-32 Identity = 89/289 (30.80%), Postives = 147/289 (50.87%), Query Frame = 0
BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 135.2 bits (339), Expect = 8.5e-32 Identity = 87/285 (30.53%), Postives = 142/285 (49.82%), Query Frame = 0
BLAST of CaUC09G178250 vs. TAIR 10
Match: AT3G16710.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 130.2 bits (326), Expect = 2.7e-30 Identity = 84/285 (29.47%), Postives = 141/285 (49.47%), Query Frame = 0
BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G62680.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 120.2 bits (300), Expect = 2.8e-27 Identity = 87/296 (29.39%), Postives = 132/296 (44.59%), Query Frame = 0
BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 118.6 bits (296), Expect = 8.2e-27 Identity = 80/285 (28.07%), Postives = 134/285 (47.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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