CaUC09G177670 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G177670
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPre-mRNA-splicing factor like
LocationCiama_Chr09: 36947731 .. 36951057 (-)
RNA-Seq ExpressionCaUC09G177670
SyntenyCaUC09G177670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTCAGTATTCAATGGACCCGTCGTCAGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGGTAATGTTCCTTCTTTGATTCTTGTATCTCTTTTCCCCAAATTGGAAATGGGGTTTGTTTGTTTCTTCAAATTGGGTTTCCGTGGATTAGAAATTTTGGAATCTGTAATCGGATTTTGGGAATGTGGTTATGAACCCTAATATTGAATAGTGGGTCTGTTTTTGGGAATATTTTGGATCCATTTAATCTCCTTTTCTGGAATTGTGCTGGAAATTTGTCTACTGATTTTGACCCAATATTGCTGATTGTTTGATGGTCTATACTAAAGATTTCGTTGTTTTGTGTTCTGTGTTTGGTGGTTTGTTCTTTGTACTGATAGAAATTTTGTTTCCCCTGTTTATGAGGCCTTGTTATTATCGTTGCCACTTTATACTCGTACCTTTCCTTCTGAATATAGAAATTTGAGGTTTGGTTGAGTGAATTTTAAGTAGTTACCTTTTGGGAATAGGTATGATGTTCCCAAATTTCAGTACATAGGAAATCGAGCCTTACAAGTTTTGGTTTCTTCTGATTAAGCTCTTAACTTTGGTTAGTAGAAAATTGTTGTCCTCTTCCTAACCAAGTAAGAAAATTGTTCAATAAAATCCAACTGCAGAAAAGTTCAAGCCAAGCAAAAAGTCAAGTATACCAAAAGACTGCCCAAACTGAGAACAAAAGTAGTCTAGTCTGGCTCAGCTACAAGAACACCCACGCATTCTACACATATTTCGAGAGCACAACTTAACAATTAAAGGATGTTGATGTTGCTACTTATTCTTTGGCTTAGGTTCAATTGGAAAGTTGATAGGCTAAATTTGACTCACTTAAGTACGAAGTTACATGAGGGAAATGATTTTTGCTAAAAAAATGTATTCTTCTCTGTCTGGTAGTTTCGGCATGAAAATGGAAAGTGATGTGTTACTTGATGAATAGCTCTTTTCGTATCTTTGCAAGTTATCCCGTGGGATGTGTAGATTAGAATGTAGTTGTTAGTTGAAAGGTTAACTGTGAGGGAGTGTTTATCATTCATTATGTGTAGTTGTTAGCTTGCAAATGGTAAATTTAATAGCATTCTAACATTTTTCTTAGATGGGAAATAATTTTATTGATGTTAAGAGCTTATAAAAAAGGGTGGAGTATGAAAAACTTCTCTCCTTGACCAAAAGCATACAGAGAAAGAGCTGCTAAAGTTAGAAAATCTAAGAATTGTTTAAAGAACTTCTCCTTGGTCTTTCTTTCAAGCCATAAAATTTTAAAAGAAAATTGGCCTGGTGAATTGAAGCCAAAGAACTTCCTTTCCTCTTTTTAGAGGGTGCCCCACCATAATGTGATTTTCTTTTCCTGTTTGGCAAAGAGAACACCATCCCAAGGATACGCCACTTTTTAATCTTGTCATGGGGATTTGGACTTCTATGAATGAGCTCTCATAGGAAGAACTCTACCTTCTTTGGAGGAGAACTCTTCACTTTATCTTTAATTTACTAGTTCAACAAGTGGAGAGCAAACAATAACTTGCCAAATGGACCTAGTAGCCACGTCAATTGATCTATGTAAATGGATTGACTGAAAACTAGATAAGAAATGTGTGGACATCCATTCAAGGATATTGTCGTCCTTGAGCGTTTCTTCTTCTGCCTAGGTTCTGTGAGCTGGTTGAAGAACTCCACAAGTCCTGGGACGATGAAGTGTTTTGAATAGATAAATAGAAGATACTTGGATAAACCACGGCTAAATGGGCATTGCCAGTCCAAAAAACTCCCAGAAGTGCGTGGACGAACCATTGCTCACAGTCAGTTTGATTCTAAATTGAATAAAATCTGTGCCCAGTGGCTTGATAATAAACGAGATTCTAACAATCTGTTACTCTTTTCGTTTCTTGTTTTAATGTTCAGTTCCTTTGGGTGCCTGGATGTTGATATTGTTCTTGAACTATGAATATATGCACTCTGTGAGGAAATTCATATTAATTGTATTCTTACATTTATTTGAACGGTCTATTTAGACTTGATATTTACTTCTCAAATTATTATTATGAATTTAAATACTACTTTTGGCTTTGGTTCATTTTGGTTTATGTGCTTTCAAAATGGTCATTTGGGCCTCTATACTTTTAAAAGTGACTATTTTGGTTGTTTAAAAATGAAATAAGAATGAAATTTAATATATCAAAATAGTCACCTATTAAAAATGCAGGGATCAACATGAATATTTTAAAAGTATAGAAACTAAAATTAACCAAAGTCGAAAATACATAAACTAAAATAAACCAAATCCAAAAGTAGAAAGAACAAAGTGGATAATTTCTTGATTGTCATAAATGCTTTATGAACAATCTGTCATTGTGGGGTTACTACAGTAGATGCTCATGAGCAAGTTACCATCACTTAGTTACCTGCCTCAGTTCTTCCCTAGCTTTTTTCTTTTCTTTTCAAGAATGATTTCCCTCAAAAGAATTGGCATTCCCTTAATATTATTTTTTTCTAATGAGCGCTCCAACTATGAATATGCCTTTACTTTCTCTCTTCTATGCTTTTGTTTGCAATGATTATGGTTTCATTTTTGTTTATCATGGAGAAGCAACATCAAAATATCACTAAAGAAATACTTTTTCAACAGCTTCCTCCAAGTGCTTCCTAAAGAATATACAAACACATTACACACTGAAGTATTTGTTTCAATGATAGTCTCCATGGAGCATGACACTGATTGTAGTGTGTGGTAAATTTTTGTAACAGACACTGATGGGTTCGTAATTCCTAGCTTGGGAATAGAAGAGACAGACCAAACTAAAGTTGGCTCTCCAAAAGTAGAAATTCAAGAACCTCCTCCAAAGGTAGTTATTAGTAAATCCTCTTAATATAAATATCAGCACAACCCACCATGGAGGTTGGCCAAGGAAGCGGATAAGCTGTAAATATCTTATGAAAATGAAAGTCAGACGCCAAATGAGATTCAGGTGATGGCATTTGTCTCAACAATTCTATTCTTGATTTGCTAATGTTTCTTCATGTTCAGGTTAAAGAAGAGACGACGATCTATCTTGGCCCACATGGTGCACCACCATCACAGTCAAAACAAGATTTGAACCCCGCCAATCGTAAGCAACGGTTAAAGCAGAAATTGAAGGAAGCTGATCGGAGGACCACGACAGGACGAGAGAATAAGTTGGAGAATTTAAGAGAGCTTGTAGGTGGTGGGAAATCAAGCACCAATATGGCAAAGGGTTCTTCTAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTCGAGAAGTAA

mRNA sequence

ATGATCGTCAGTATTCAATGGACCCGTCGTCAGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGATAAATAGAAGATACTTGGATAAACCACGGCTAAATGGGCATTGCCAGTCCAAAAAACTCCCAGAAGTGCGTGGACGAACCATTGCTCACAACACTGATGGGTTCGTAATTCCTAGCTTGGGAATAGAAGAGACAGACCAAACTAAAGTTGGCTCTCCAAAAGTAGAAATTCAAGAACCTCCTCCAAAGGTTAAAGAAGAGACGACGATCTATCTTGGCCCACATGGTGCACCACCATCACAGTCAAAACAAGATTTGAACCCCGCCAATCGTAAGCAACGGTTAAAGCAGAAATTGAAGGAAGCTGATCGGAGGACCACGACAGGACGAGAGAATAAGTTGGAGAATTTAAGAGAGCTTGTAGGTGGTGGGAAATCAAGCACCAATATGGCAAAGGGTTCTTCTAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTCGAGAAGTAA

Coding sequence (CDS)

ATGATCGTCAGTATTCAATGGACCCGTCGTCAGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGATAAATAGAAGATACTTGGATAAACCACGGCTAAATGGGCATTGCCAGTCCAAAAAACTCCCAGAAGTGCGTGGACGAACCATTGCTCACAACACTGATGGGTTCGTAATTCCTAGCTTGGGAATAGAAGAGACAGACCAAACTAAAGTTGGCTCTCCAAAAGTAGAAATTCAAGAACCTCCTCCAAAGGTTAAAGAAGAGACGACGATCTATCTTGGCCCACATGGTGCACCACCATCACAGTCAAAACAAGATTTGAACCCCGCCAATCGTAAGCAACGGTTAAAGCAGAAATTGAAGGAAGCTGATCGGAGGACCACGACAGGACGAGAGAATAAGTTGGAGAATTTAAGAGAGCTTGTAGGTGGTGGGAAATCAAGCACCAATATGGCAAAGGGTTCTTCTAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTCGAGAAGTAA

Protein sequence

MIVSIQWTRRQCTKLLQLKKMSGINRRYLDKPRLNGHCQSKKLPEVRGRTIAHNTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETTIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNMAKGSSRDWLDPHCHEAQFEK
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038898121.11.5e-5796.67uncharacterized protein LOC120085905 [Benincasa hispida][more]
XP_004150791.25.5e-5795.00uncharacterized protein LOC101216518 [Cucumis sativus] >KGN44011.1 hypothetical ... [more]
XP_022139462.18.0e-5695.00uncharacterized protein LOC111010385 [Momordica charantia][more]
TYK07949.11.8e-5593.33uncharacterized protein E5676_scaffold265G00660 [Cucumis melo var. makuwa][more]
XP_022975858.14.0e-5594.26uncharacterized protein LOC111476432 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8B72.7e-5795.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G099280 PE=4 SV=1[more]
A0A6J1CE063.9e-5695.00uncharacterized protein LOC111010385 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A5D3CCA98.6e-5693.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1IKG21.9e-5594.26uncharacterized protein LOC111476432 OS=Cucurbita maxima OX=3661 GN=LOC111476432... [more]
A0A1S3CJS13.3e-5592.50uncharacterized protein LOC103501243 OS=Cucumis melo OX=3656 GN=LOC103501243 PE=... [more]
Match NameE-valueIdentityDescription
AT5G55640.18.6e-3261.11unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..141
NoneNo IPR availablePANTHERPTHR36075BNAA10G09820D PROTEINcoord: 51..173
NoneNo IPR availablePANTHERPTHR36075:SF1BNAA10G09820D PROTEINcoord: 51..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G177670.1CaUC09G177670.1mRNA