CaUC09G175620 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G175620
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Transmembrane protein
Location	Ciama_Chr09: 34949505 .. 34949993 (+)
RNA-Seq Expression	CaUC09G175620
Synteny	CaUC09G175620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAGCCCATCTCGAGCCACACGGCGGCGTAGATTCGCCGTGGACGACGGCGCCGATCTAATCGACTGTTCCGGCAAGCATTGCCGGTCGTGCACCGCCGGGTTGGTTGCGGATTGTGTCGCCGTCTGCTGCTGCCCGTGCTCGGTGGTCAGCTTCTTGGCTCTGGCGCTGGTCAAACTCCCGTGGATGGTCGGGCGGCGGTGTCTGCAGCAGGCGAGGAAGAAGAGGAAGAAGAGGAAATTGATTCGCCGGAGAGGGGAATGCGACGGCTCTACGGCGGCGGAGAGTGATCGGGGTGCGGCGAGGGAGGAGGGGTTGCCGGAAATTTCGCCGGGATCCGGCGAGGAAGAAGAGACGATGGGGAATTTCAGTGCAAGATTTGAAGCAGAGAGAATTTGGCTGCAATTGTATCAAATGGGTCAGTTGGGATTTGGAAGAGTTTCTTTCACTGGGAATTCTAATCTTTGGCCTAATTCCAATTAG

mRNA sequence

ATGGAAGAAAGCCCATCTCGAGCCACACGGCGGCGTAGATTCGCCGTGGACGACGGCGCCGATCTAATCGACTGTTCCGGCAAGCATTGCCGGTCGTGCACCGCCGGGTTGGTTGCGGATTGTGTCGCCGTCTGCTGCTGCCCGTGCTCGGTGGTCAGCTTCTTGGCTCTGGCGCTGGTCAAACTCCCGTGGATGGTCGGGCGGCGGTGTCTGCAGCAGGCGAGGAAGAAGAGGAAGAAGAGGAAATTGATTCGCCGGAGAGGGGAATGCGACGGCTCTACGGCGGCGGAGAGTGATCGGGGTGCGGCGAGGGAGGAGGGGTTGCCGGAAATTTCGCCGGGATCCGGCGAGGAAGAAGAGACGATGGGGAATTTCAGTGCAAGATTTGAAGCAGAGAGAATTTGGCTGCAATTGTATCAAATGGGTCAGTTGGGATTTGGAAGAGTTTCTTTCACTGGGAATTCTAATCTTTGGCCTAATTCCAATTAG

Coding sequence (CDS)

ATGGAAGAAAGCCCATCTCGAGCCACACGGCGGCGTAGATTCGCCGTGGACGACGGCGCCGATCTAATCGACTGTTCCGGCAAGCATTGCCGGTCGTGCACCGCCGGGTTGGTTGCGGATTGTGTCGCCGTCTGCTGCTGCCCGTGCTCGGTGGTCAGCTTCTTGGCTCTGGCGCTGGTCAAACTCCCGTGGATGGTCGGGCGGCGGTGTCTGCAGCAGGCGAGGAAGAAGAGGAAGAAGAGGAAATTGATTCGCCGGAGAGGGGAATGCGACGGCTCTACGGCGGCGGAGAGTGATCGGGGTGCGGCGAGGGAGGAGGGGTTGCCGGAAATTTCGCCGGGATCCGGCGAGGAAGAAGAGACGATGGGGAATTTCAGTGCAAGATTTGAAGCAGAGAGAATTTGGCTGCAATTGTATCAAATGGGTCAGTTGGGATTTGGAAGAGTTTCTTTCACTGGGAATTCTAATCTTTGGCCTAATTCCAATTAG

Protein sequence

MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEETMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN

Homology

[Close]

BLAST of CaUC09G175620 vs. NCBI nr
Match: XP_038891069.1 (uncharacterized protein LOC120080480 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 7.0e-78
Identity = 150/162 (92.59%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPSR TRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALAL+
Sbjct: 1   MQESPSRPTRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALI 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQ+ARKKRKKRKLIRRRGECDG+TAAE+   AA EEGLPEISPGSGEEEE
Sbjct: 61  KLPWMVGRRCLQRARKKRKKRKLIRRRGECDGATAAETGGCAASEEGLPEISPGSGEEEE 120

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T+GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 121 TVGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of CaUC09G175620 vs. NCBI nr
Match: XP_008458773.1 (PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >KAA0037530.1 uncharacterized protein E6C27_scaffold277G001430 [Cucumis melo var. makuwa] >TYK02005.1 uncharacterized protein E5676_scaffold808G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 4.5e-77
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQQARKKRKKRKL+RRRGECDG+TAAE+      E+GLPEISPGSGEE+E
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAAETGGCVGNEKGLPEISPGSGEEDE 120

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 121 TTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of CaUC09G175620 vs. NCBI nr
Match: XP_011655414.1 (uncharacterized protein LOC105435525 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 145/162 (89.51%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS+ATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQQARKKRKKRKL+ RRGECDG+TAAE+      E+GLPE+SPGSGEE+E
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDE 120

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 121 TTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of CaUC09G175620 vs. NCBI nr
Match: KGN51853.2 (hypothetical protein Csa_008870 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 145/162 (89.51%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS+ATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 456 MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 515

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQQARKKRKKRKL+ RRGECDG+TAAE+      E+GLPE+SPGSGEE+E
Sbjct: 516 KLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDE 575

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 576 TTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 617

[Close]

BLAST of CaUC09G175620 vs. NCBI nr
Match: XP_023536558.1 (uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 7.2e-67
Identity = 139/166 (83.73%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAA-ESDRGAAREEGLPEISPGSG--- 120
           KLPWM+GRRCLQ+A   RKKRKLIRR+ ECDG+ AA E+  G AREE LPEI PGSG   
Sbjct: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETGLGPAREEELPEIMPGSGEEE 120

Query: 121 EEEETMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           EEEE +GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 EEEEEVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 163

[Close]

BLAST of CaUC09G175620 vs. ExPASy TrEMBL
Match: A0A1S3C8M3 (uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.2e-77
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQQARKKRKKRKL+RRRGECDG+TAAE+      E+GLPEISPGSGEE+E
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAAETGGCVGNEKGLPEISPGSGEEDE 120

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 121 TTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of CaUC09G175620 vs. ExPASy TrEMBL
Match: A0A5A7T2E5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001190 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.2e-77
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MQESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQQARKKRKKRKL+RRRGECDG+TAAE+      E+GLPEISPGSGEE+E
Sbjct: 61  KLPWMVGRRCLQQARKKRKKRKLVRRRGECDGATAAETGGCVGNEKGLPEISPGSGEEDE 120

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 121 TTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 162

[Close]

BLAST of CaUC09G175620 vs. ExPASy TrEMBL
Match: A0A0A0KR58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.0e-76
Identity = 145/162 (89.51%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           M+ESPS+ATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 86  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 145

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAAESDRGAAREEGLPEISPGSGEEEE 120
           KLPWMVGRRCLQQARKKRKKRKL+ RRGECDG+TAAE+      E+GLPE+SPGSGEE+E
Sbjct: 146 KLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDE 205

Query: 121 TMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
           T GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSNLWPNSN
Sbjct: 206 TTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN 247

[Close]

BLAST of CaUC09G175620 vs. ExPASy TrEMBL
Match: A0A6J1HEE2 (uncharacterized protein LOC111463206 OS=Cucurbita moschata OX=3662 GN=LOC111463206 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 139/167 (83.23%), Postives = 146/167 (87.43%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAA-ESDRGAAREEGLPEISPGS---- 120
           KLPWM+GRRCLQ+A   RKKRKLIRR+ ECDG+ AA E+  G AREEGLPEI PGS    
Sbjct: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEE 120

Query: 121 GEEEETMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
            EEEE +GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 EEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 164

[Close]

BLAST of CaUC09G175620 vs. ExPASy TrEMBL
Match: A0A6J1JH40 (uncharacterized protein LOC111486958 OS=Cucurbita maxima OX=3661 GN=LOC111486958 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.0e-66
Identity = 139/172 (80.81%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MEESPSRATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60
           MEESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV
Sbjct: 1   MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALV 60

Query: 61  KLPWMVGRRCLQQARKKRKKRKLIRRRGECDGSTAA-ESDRGAAREEGLPEISPGS---- 120
           KLPWM+GRRCLQ+A   RKKRKLIRR+ ECDG+ AA E+  G AREEGLPEI PGS    
Sbjct: 61  KLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETGLGPAREEGLPEIVPGSVEEE 120

Query: 121 -----GEEEETMGNFSARFEAERIWLQLYQMGQLGFGRVSFTGNSNLWPNSN 163
                 EEEE +GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Sbjct: 121 EEEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN 169

[Close]

BLAST of CaUC09G175620 vs. TAIR 10
Match: AT5G14690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 73/188 (38.83%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 10  RRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRR 69
           RRRR       D + CS K CRS  A  +ADCVA+CCCPC++++ L L LVK+PWM+GRR
Sbjct: 28  RRRRHNHHTHGDEVKCSSKRCRSWAAAAIADCVALCCCPCAIINLLTLTLVKVPWMIGRR 87

Query: 70  CLQQARKKRKKRKLIRRR-------------------------------------GEC-- 129
           CL    + +KKR++I RR                                     G C  
Sbjct: 88  CLGGGGRNKKKRRVIHRRKRRGNINGEDEFYHHNNHHRRFETAEEGEKCGCGGGGGGCYG 147

Query: 130 -----DGSTAAESDRGAAREEGLPEISPGSGEEEETMGNFSARFEAERIWLQLYQMGQLG 154
                D     E D    +EE   E +     E+      SAR EAER+WL+LYQ+G LG
Sbjct: 148 GGDYDDHRFVVERDGSLTKEEEEEERTTSCKGEDHDESRISARVEAERVWLELYQIGHLG 207

[Close]

BLAST of CaUC09G175620 vs. TAIR 10
Match: AT3G01516.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-25
Identity = 66/152 (43.42%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 25  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLI 84
           CSGK CRS  A  +ADCVA+CCCPC+VV+   LA VK+PWM+GR+C+ +    +K+ K I
Sbjct: 33  CSGKRCRSWAAAAIADCVALCCCPCAVVNIFTLAFVKVPWMIGRKCIGRGGPSKKRMKKI 92

Query: 85  RRR-----------------GEC----DGSTAAESDRGAAREEG--LPEISPGSGEEEET 144
            R                  G C    DG    +  R     +G    E +  +  +EE 
Sbjct: 93  NREDRFHHHHHHRRSAEMVSGGCCGGGDGDGEFDDHRFVVERDGSLTKEEAKTASLKEEE 152

Query: 145 MGNFSARFEAERIWLQLYQMGQLGFGRVSFTG 154
               SAR EAER+WL+LYQ+G LGFGRVSFTG
Sbjct: 153 ETRISARVEAERVWLELYQIGHLGFGRVSFTG 184

[Close]

BLAST of CaUC09G175620 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 6.4e-05
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 4   SPSRATRRR---RFAVDDGADLIDCSGKHCRSCTAGLVADCVAV-CCCPCSVVSFLALAL 63
           SPSR+ RR+   + ++   +    C G        G  A C AV CCCPC +V+ L LA+
Sbjct: 25  SPSRSNRRQPLLQRSLSSPSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLVNLLVLAI 84

Query: 64  VKLPWMVGRRCLQQARKKR 79
            K+P  + RR ++  R+K+
Sbjct: 85  YKVPKGICRRAIRSRRRKQ 103

[Close]

BLAST of CaUC09G175620 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 35/117 (29.91%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 27  GKHCRSCTAGLVADCVAVC-CCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLIR 86
           G     C  G  A C A+C C PCSVV+ + LA+ KLP  + RR +++ R+KR  +K   
Sbjct: 20  GSTTAECCGGTTASCAALCLCAPCSVVNLVVLAVYKLPRGLCRRAIRRIRRKRLAKKEFV 79

Query: 87  RRGECDGSTAAESDRGAAREEGLPEISPGSGEEEETMGNFSARFEAERIWLQLYQMG 143
             G        E  RG + +  +  +     EEEE   + +     + +W + Y  G
Sbjct: 80  ESGR-------EFGRGGSSQFAVHPLESRDEEEEEEEEDEAVIALEKEMWSRFYSGG 129

The following BLAST results are available for this feature:

BLAST of CaUC09G175620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891069.1	7.0e-78	92.59	uncharacterized protein LOC120080480 [Benincasa hispida]	[more]
XP_008458773.1	4.5e-77	91.36	PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 P...	[more]
XP_011655414.1	1.5e-75	89.51	uncharacterized protein LOC105435525 [Cucumis sativus]	[more]
KGN51853.2	1.5e-75	89.51	hypothetical protein Csa_008870 [Cucumis sativus]	[more]
XP_023536558.1	7.2e-67	83.73	uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC09G175620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G175620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8M3	2.2e-77	91.36	uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=...	[more]
A0A5A7T2E5	2.2e-77	91.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KR58	7.0e-76	89.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1	[more]
A0A6J1HEE2	1.0e-66	83.23	uncharacterized protein LOC111463206 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A6J1JH40	3.0e-66	80.81	uncharacterized protein LOC111486958 OS=Cucurbita maxima OX=3661 GN=LOC111486958...	[more]

BLAST of CaUC09G175620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14690.1	1.3e-26	38.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G01516.1	5.6e-25	43.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11690.1	6.4e-05	35.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G06380.1	4.2e-04	29.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..106
None	No IPR available	PANTHER	PTHR33264	EXPRESSED PROTEIN	coord: 3..158
None	No IPR available	PANTHER	PTHR33264:SF6	OS01G0661650 PROTEIN	coord: 3..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G175620.1	CaUC09G175620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane