CaUC09G174680 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G174680
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 33805763 .. 33806205 (-)
RNA-Seq ExpressionCaUC09G174680
SyntenyCaUC09G174680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCACCCTAAAATTTTCTCAACTCTTCTCCTTTCATGTTTTCTTCTTCTCTTTTTCTCAAACGGTACTATCATTTTCTTTTCTTTTCTTTTCTATTCCTTTTTCATGGATTGATATAATATATATATTATATATATATTTTTCTTTTTCTTTTTTCTTAAGGATTAAGGGTGGAAGTGATGGCAATTACTGTGGGACATGGAAGCTATGTTAGTAGTAGATCACTGAAGGTATGATTTTGTTTTGAAATAATTAATAAAAGGGTATGATTTTGGAATATATATATTTTATTTATGTAGGTTTAATTTATAATATTTTGGCAGGAAAGTGGTGGAAAAATCAGAAAAATGATGATTGAAGTAATGGACTATGCAGATCCAGGGCCAAATACTAATACTAGAACTGGGTATCTTAATCCTCCTCCCCCTCCACCAGCTTAA

mRNA sequence

ATGGGTCACCCTAAAATTTTCTCAACTCTTCTCCTTTCATGTTTTCTTCTTCTCTTTTTCTCAAACGGATTAAGGGTGGAAGTGATGGCAATTACTGTGGGACATGGAAGCTATGTTAGTAGTAGATCACTGAAGGAAAGTGGTGGAAAAATCAGAAAAATGATGATTGAAGTAATGGACTATGCAGATCCAGGGCCAAATACTAATACTAGAACTGGGTATCTTAATCCTCCTCCCCCTCCACCAGCTTAA

Coding sequence (CDS)

ATGGGTCACCCTAAAATTTTCTCAACTCTTCTCCTTTCATGTTTTCTTCTTCTCTTTTTCTCAAACGGATTAAGGGTGGAAGTGATGGCAATTACTGTGGGACATGGAAGCTATGTTAGTAGTAGATCACTGAAGGAAAGTGGTGGAAAAATCAGAAAAATGATGATTGAAGTAATGGACTATGCAGATCCAGGGCCAAATACTAATACTAGAACTGGGTATCTTAATCCTCCTCCCCCTCCACCAGCTTAA

Protein sequence

MGHPKIFSTLLLSCFLLLFFSNGLRVEVMAITVGHGSYVSSRSLKESGGKIRKMMIEVMDYADPGPNTNTRTGYLNPPPPPPA
Homology
BLAST of CaUC09G174680 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MGHPKIFST-LLLSCFLLLFFSNGLRVEVMAITVGHGSYVS-SRSLKESGGKIRKMMIEV 60
          M HPK+FST LLLSCFLLL F++GL+VE M  ++GHGS V  S SLK  GGK RKMMIE+
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVE-MIESLGHGSNVRISPSLKGIGGKSRKMMIEI 60

Query: 61 MDYADPGPNTNTRTGYLNPPPPP 82
          MDYADPGPNTNTR+GYLNPPPPP
Sbjct: 61 MDYADPGPNTNTRSGYLNPPPPP 82

BLAST of CaUC09G174680 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MGHPKIFSTLLLSCFLLLFFSNGLRVEVMAITVGHGSYVSSRSLKESGGKIRKMMIEVMD 60
          M HPKIF  LLL  F++L F  G  +E  A    H  Y +S S K+SGGK RK+M+EVMD
Sbjct: 1  MDHPKIFPILLL-LFIILGFGVG-AMEAAA----HPGYDTSSSQKKSGGKPRKVMMEVMD 60

Query: 61 YADPGPNTNTRTGYLNPPPPPP 83
          YADPGPNTNTR+GYL PP  PP
Sbjct: 61 YADPGPNTNTRSGYLTPPSSPP 76

BLAST of CaUC09G174680 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 8.4e-11
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 29 MAITVGHGSYVSSRSLKESGGKIRKMMIEVMDYADPGPNTNTR-TGYLNPPPPPPA 84
          M  ++GHGS V S SLK  GGK RKMMIE+MDYADPGPN NTR +GYL PPPPP A
Sbjct: 1  MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 56

BLAST of CaUC09G174680 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 48/81 (59.26%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 4  PKIFSTLLLSCFLLLFFSNGLRVEVMAITVGHGSYVSSRSLKESGGKIRKMMIEVMDYAD 63
          PKIF  L     LLLF   G  V  M      G  +SS S K+SGGK RK+M+EVMDYAD
Sbjct: 2  PKIFPIL-----LLLFIIFGFGVGAMEAAAHAGCDISS-SQKKSGGKPRKVMMEVMDYAD 61

Query: 64 PGPNTNTRTGYLNPP--PPPP 83
          PGPNTNTR+GYL PP  PPPP
Sbjct: 62 PGPNTNTRSGYLTPPSSPPPP 76

BLAST of CaUC09G174680 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 9.3e-10
Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 4  PKIFSTLLLSCFLLLFFSNGLRVEVMAITVGHGSYVSSRSLKESGGKIRKMMIEVMDYAD 63
          PKIF  L     LLLF   G  V  M      G  +SS   ++SGGK RK+M+EVMDYAD
Sbjct: 2  PKIFPIL-----LLLFIIFGFGVGAMEAAAHAGCDISSS--QKSGGKPRKVMMEVMDYAD 61

Query: 64 PGPNTNTRTGYLNPP--PPPP 83
          PGPNTNTR+GYL PP  PPPP
Sbjct: 62 PGPNTNTRSGYLTPPSSPPPP 75

BLAST of CaUC09G174680 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-22
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MGHPKIFST-LLLSCFLLLFFSNGLRVEVMAITVGHGSYVS-SRSLKESGGKIRKMMIEV 60
          M HPK+FST LLLSCFLLL F++GL+VE M  ++GHGS V  S SLK  GGK RKMMIE+
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVE-MIESLGHGSNVRISPSLKGIGGKSRKMMIEI 60

Query: 61 MDYADPGPNTNTRTGYLNPPPPP 82
          MDYADPGPNTNTR+GYLNPPPPP
Sbjct: 61 MDYADPGPNTNTRSGYLNPPPPP 82

BLAST of CaUC09G174680 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 29 MAITVGHGSYVSSRSLKESGGKIRKMMIEVMDYADPGPNTNTR-TGYLNPPPPPPA 84
          M  ++GHGS V S SLK  GGK RKMMIE+MDYADPGPN NTR +GYL PPPPP A
Sbjct: 1  MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 56

BLAST of CaUC09G174680 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 44/86 (51.16%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1  MGHPKIFSTLLLSCFLL-LFFSNG----LRVEVMAITVGHGSYVSSRSLKESGGKIRKMM 60
          MG     S LLL  FL+ L FSNG    LR+ V  +   H S V    L+ESG K R M 
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRV---LLEESGRKWRMMK 60

Query: 61 IEVMDYADPGPNTNTRTGYLNPPPPP 82
          +E MDYADP PNTN + GY++PPPPP
Sbjct: 61 METMDYADPEPNTNVKGGYVSPPPPP 83

BLAST of CaUC09G174680 vs. ExPASy TrEMBL
Match: A0A2P5CWE3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1  MGHPKIFSTLLLSCFLLLFFSNGLRVEVMAITVGH-GSYVSSRSLKESGGKIRKMMIEVM 60
          MG     + LL+S F+LLFFS+G     +    GH   + SS  +KE+GG   + MIEV 
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYADPGPNTNTRTGYLNPPPP 81
          DY++P PNTN R GY+  PPP
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPP 81

BLAST of CaUC09G174680 vs. ExPASy TrEMBL
Match: A0A5J5U1X7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G105900v1 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.9e-07
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 0

Query: 1  MGHPKIFSTLLLSCFLLLFFSNGLRVEVMAITVGHGSYVSSRSLKESGGKIRKMMIEVMD 60
          MG     + LLLS  LLL FS G  +  M  TV      S+  L++      + MIE+MD
Sbjct: 1  MGRSCFLNLLLLSMLLLLSFSQGFSIREMMETVEFEE--STAQLEQENADTSREMIEIMD 60

Query: 61 YADPGPNTNTRTGYLNPPPP 81
          Y DPGPN N RTGY+  PPP
Sbjct: 61 YKDPGPNVNPRTGYIFSPPP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52468.11.8e-2174.70hypothetical protein Csa_007886 [Cucumis sativus][more]
KAG6602500.12.0e-1259.76hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0039487.18.4e-1171.43hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
XP_023527249.11.1e-1059.26uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023527257.19.3e-1056.79uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSB78.7e-2274.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT54.1e-1171.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCS03.2e-0851.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1[more]
A0A2P5CWE32.7e-0745.68Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE... [more]
A0A5J5U1X77.9e-0745.00Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G105900v1 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..83
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G174680.1CaUC09G174680.1mRNA