CaUC09G174020 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G174020
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Phytocyanin domain-containing protein
Location	Ciama_Chr09: 32939393 .. 32940367 (-)
RNA-Seq Expression	CaUC09G174020
Synteny	CaUC09G174020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTTGGTTTTGGGGACATAATTGTACTTTGCCTTTCAAACCTAGGCACAAGTCTCCTCCACCGCCATCACGGCGGCTCCCACCCTCACCACCACCATTACGACGTCCTCGAACCCCACCATTACCACGGTTTCCACCGGCACCATCACGACATCCTCGAACTCCACCATCACGACGGTTTCCGCCATCACCACCACCATCAAGACATCCTCGAACACCACCATCACCACGTTTTTCGCCACCACCACCACGGCGTCCTCGAACACCACCATCACAAAGACTGTCGCCGCCACCACCACCACTAGTGCTATCATCGCCTCCACCACCATCAAGAAGGCCTCGAACACCACCACCACAAAAGTTGCCACCACTTCCACCACCATCACCGATGGTGTCACCACCACCACCACGATCACGACGGCCACGAACACCACCATCTCAACAAATACCACCACCACCACCATCGCCATCATTGCCGTCACCATCGCCATCATTGCCACCATCACCACTACCGACTCCACAAAGTCCAAGAAAGATCATAGTGGGTGGTTCTAACCAATGGCAGCTTGGCTTCAATTATAATGATTGGGCACTCAAAAATGGTCCCTTTTATGTAAACGATATTCTAGGTAATCCTCTTTAAGCTCATCTCCATGGTTAGTATGAGAAAATTTCATTCCCAAACTTATTTTGAAAGTTTTTTTTTTCTTTTTGCAGTGTTCAAATATGATCCTCCAAACACTTCAACTCCTCCTCATAGTGTTTATCAGCTACCAAACATGAGAAGCTTTGCCAATTGTGATTTGGGAAAGGGCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGTTTTGAGTTTGTGCTCAAAGACCAAAATCCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAAATTGGATCCATGAAGTTCACCCTCACACCAATAGTTCGGAGTTAA

mRNA sequence

ATGAGAGTTGGTTTTGGGGACATAATTGTACTTTGCCTTTCAAACCTAGGCACAAGTCTCCTCCACCGCCATCACGGCGGCTCCCACCCTCACCACCACCATTACGACGTCCTCGAACCCCACCATTACCACGTGTTCAAATATGATCCTCCAAACACTTCAACTCCTCCTCATAGTGTTTATCAGCTACCAAACATGAGAAGCTTTGCCAATTGTGATTTGGGAAAGGGCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGTTTTGAGTTTGTGCTCAAAGACCAAAATCCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAAATTGGATCCATGAAGTTCACCCTCACACCAATAGTTCGGAGTTAA

Coding sequence (CDS)

ATGAGAGTTGGTTTTGGGGACATAATTGTACTTTGCCTTTCAAACCTAGGCACAAGTCTCCTCCACCGCCATCACGGCGGCTCCCACCCTCACCACCACCATTACGACGTCCTCGAACCCCACCATTACCACGTGTTCAAATATGATCCTCCAAACACTTCAACTCCTCCTCATAGTGTTTATCAGCTACCAAACATGAGAAGCTTTGCCAATTGTGATTTGGGAAAGGGCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGTTTTGAGTTTGTGCTCAAAGACCAAAATCCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAAATTGGATCCATGAAGTTCACCCTCACACCAATAGTTCGGAGTTAA

Protein sequence

MRVGFGDIIVLCLSNLGTSLLHRHHGGSHPHHHHYDVLEPHHYHVFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFACGEGNGFHCKIGSMKFTLTPIVRS

Homology

[Close]

BLAST of CaUC09G174020 vs. NCBI nr
Match: XP_038902031.1 (extensin-3-like [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVAN+TQGS DGFEFVLKDQNPYYFA
Sbjct: 235 VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANITQGSRDGFEFVLKDQNPYYFA 294

Query: 105 CGEGNGFHCKIGSMKFTLTPIVR 128
           CGEGNGFHCK+GSMKFTLTPIV+
Sbjct: 295 CGEGNGFHCKLGSMKFTLTPIVK 317

[Close]

BLAST of CaUC09G174020 vs. NCBI nr
Match: XP_008459215.1 (PREDICTED: extensin, partial [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN STPPHSVY LPNMRSFANCDLGK KM+AN+ QGSGDGFEFVLKDQNPYYFA
Sbjct: 72  VFKYDPPNMSTPPHSVYLLPNMRSFANCDLGKAKMLANIKQGSGDGFEFVLKDQNPYYFA 131

Query: 105 CGEGNGFHCKIGSMKFTLTPIVR 128
           CGEGNGFHCK+GSMKFT+TPI++
Sbjct: 132 CGEGNGFHCKLGSMKFTITPILK 154

[Close]

BLAST of CaUC09G174020 vs. NCBI nr
Match: TYK13568.1 (extensin [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN STPPHSVY LPNMRSFANCDLGK KM+AN+ QGSGDGFEFVLKDQNPYYFA
Sbjct: 24  VFKYDPPNMSTPPHSVYLLPNMRSFANCDLGKAKMLANIKQGSGDGFEFVLKDQNPYYFA 83

Query: 105 CGEGNGFHCKIGSMKFTLTPIVR 128
           CGEGNGFHCK+GSMKFT+TPI++
Sbjct: 84  CGEGNGFHCKLGSMKFTITPILK 106

[Close]

BLAST of CaUC09G174020 vs. NCBI nr
Match: XP_011649199.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN61733.1 hypothetical protein Csa_006192 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.8e-37
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN STPPH+VY LPNMRS ANCD GK K++AN+TQGSGDGFEFVLKDQNPYYFA
Sbjct: 211 VFKYDPPNRSTPPHNVYLLPNMRSLANCDFGKAKVLANITQGSGDGFEFVLKDQNPYYFA 270

Query: 105 CGEGNGFHCKIGSMKFTLTPIVRS 129
           CGEGNGFHCK+GSMKFTLTPI+++
Sbjct: 271 CGEGNGFHCKLGSMKFTLTPILKA 294

[Close]

BLAST of CaUC09G174020 vs. NCBI nr
Match: XP_023512234.1 (uncharacterized protein LOC111777023 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 44  HVFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGD-GFEFVLKDQNPYY 103
           H+FKYDPPN++TP HSVYQLPNMRSF NCDLGK KM+AN TQGS + GFEF LK QNPYY
Sbjct: 29  HIFKYDPPNSTTPAHSVYQLPNMRSFVNCDLGKAKMLANSTQGSTENGFEFELKHQNPYY 88

Query: 104 FACGEGNGFHCKIGSMKFTLTPIVR 128
           FACGE NGFHC+ GSMKFTLTPI++
Sbjct: 89  FACGEANGFHCQTGSMKFTLTPILQ 113

[Close]

BLAST of CaUC09G174020 vs. ExPASy TrEMBL
Match: A0A5D3CQT7 (Extensin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00480 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN STPPHSVY LPNMRSFANCDLGK KM+AN+ QGSGDGFEFVLKDQNPYYFA
Sbjct: 24  VFKYDPPNMSTPPHSVYLLPNMRSFANCDLGKAKMLANIKQGSGDGFEFVLKDQNPYYFA 83

Query: 105 CGEGNGFHCKIGSMKFTLTPIVR 128
           CGEGNGFHCK+GSMKFT+TPI++
Sbjct: 84  CGEGNGFHCKLGSMKFTITPILK 106

[Close]

BLAST of CaUC09G174020 vs. ExPASy TrEMBL
Match: A0A1S3CAV5 (extensin OS=Cucumis melo OX=3656 GN=LOC103498405 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN STPPHSVY LPNMRSFANCDLGK KM+AN+ QGSGDGFEFVLKDQNPYYFA
Sbjct: 72  VFKYDPPNMSTPPHSVYLLPNMRSFANCDLGKAKMLANIKQGSGDGFEFVLKDQNPYYFA 131

Query: 105 CGEGNGFHCKIGSMKFTLTPIVR 128
           CGEGNGFHCK+GSMKFT+TPI++
Sbjct: 132 CGEGNGFHCKLGSMKFTITPILK 154

[Close]

BLAST of CaUC09G174020 vs. ExPASy TrEMBL
Match: A0A0A0LIT9 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G234585 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN STPPH+VY LPNMRS ANCD GK K++AN+TQGSGDGFEFVLKDQNPYYFA
Sbjct: 211 VFKYDPPNRSTPPHNVYLLPNMRSLANCDFGKAKVLANITQGSGDGFEFVLKDQNPYYFA 270

Query: 105 CGEGNGFHCKIGSMKFTLTPIVRS 129
           CGEGNGFHCK+GSMKFTLTPI+++
Sbjct: 271 CGEGNGFHCKLGSMKFTLTPILKA 294

[Close]

BLAST of CaUC09G174020 vs. ExPASy TrEMBL
Match: A0A6J1FUQ3 (alpha carbonic anhydrase 8-like OS=Cucurbita moschata OX=3662 GN=LOC111448602 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.4e-31
Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 26  GGSHPHHHHYDVLE------PHHYH---VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGK 85
           GGS   H  +D  +      P H +   VFKYDPPN++TP HSVYQLPNMRSF NCDLGK
Sbjct: 135 GGSEHWHLGFDYNDWALKNGPFHINDILVFKYDPPNSTTPAHSVYQLPNMRSFVNCDLGK 194

Query: 86  GKMVANLTQGSGD-GFEFVLKDQNPYYFACGEGNGFHCKIGSMKFTLTPIVR 128
            KM+AN TQGS + GFEF LK QNPYYFACGE NGFHC+ GSMKFTLTPI++
Sbjct: 195 AKMLANSTQGSTENGFEFQLKHQNPYYFACGEANGFHCQTGSMKFTLTPILQ 246

[Close]

BLAST of CaUC09G174020 vs. ExPASy TrEMBL
Match: A0A6J1G5T9 (extensin-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYDPPN+STPPH+VY LPNM+S   CD  + K+VANLTQGSG+GF FVLK Q  YYFA
Sbjct: 166 VFKYDPPNSSTPPHNVYLLPNMQSLNKCDFRRAKLVANLTQGSGNGFNFVLKQQKAYYFA 225

Query: 105 CGEGNGFHCKIGSMKFTLTP 125
           CGEGNGFHC +GSMKF++TP
Sbjct: 226 CGEGNGFHCNLGSMKFSITP 245

[Close]

BLAST of CaUC09G174020 vs. TAIR 10
Match: AT2G15780.1 (Cupredoxin superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 7.0e-23
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKY+PP   T  HSVY LPN  S+  CD+ KGKM+A+  QG+G GFEFVLK   PYY +
Sbjct: 175 VFKYNPPAPFT--HSVYLLPNPSSYEKCDVKKGKMIASPKQGAGKGFEFVLKQMKPYYIS 234

Query: 105 CGEGNGFHCKIGSMKFTLTPIV 127
           CGE +G HC  G+MKFT+ P++
Sbjct: 235 CGEHDGAHCSNGTMKFTVMPML 254

[Close]

BLAST of CaUC09G174020 vs. TAIR 10
Match: AT2G15770.1 (Cupredoxin superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.5e-12
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 45  VFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFA 104
           VFKYD   ++   ++VY   +  S+ NCD+   + + +  +GS + F F LK   PY+FA
Sbjct: 177 VFKYD--KSAKRRNNVYLFKDRWSYMNCDIKNARKIGSTRKGSEESFNFTLKKIQPYFFA 236

Query: 105 CGEGNGFHCKIGSMKFTLTPIV 127
            GE +G +C+  +MKFT+ P++
Sbjct: 237 SGEHDGDYCRNHNMKFTIFPVL 256

[Close]

BLAST of CaUC09G174020 vs. TAIR 10
Match: AT4G33930.1 (Cupredoxin superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 45  VFKY--DPPNTSTPPH------SVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLK 104
           VFKY  D    S   H       VY LP+M+SF  C++ +GK +      S  GF+ +L+
Sbjct: 252 VFKYNNDDQTQSKTKHRNKKKNDVYLLPDMKSFKRCNVARGKKLVARGGSSSRGFKLLLR 311

Query: 105 DQNPYYFACGEGNGFHCKIGSMKFTLTPIVR 128
               YYFA G+ N   C   +MKF++ PI R
Sbjct: 312 KVQTYYFASGDHN--ECN-HNMKFSVHPIPR 339

[Close]

BLAST of CaUC09G174020 vs. TAIR 10
Match: AT4G34300.1 (Cupredoxin superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 24/68 (35.29%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 58  HSVYQLPNMRSFANCDLGKGKMVANLTQGSGDGFEFVLKDQNPYYFACGEGNGFHCKIGS 117
           + VY LP+M+SF  C++ +GK +      S  GF+ +L+  + YYF  G+ N  +    +
Sbjct: 243 NDVYLLPDMKSFKRCNVARGKKLVARGGSSSRGFKLLLRKVHTYYFVSGDHNDCN---HN 302

Query: 118 MKFTLTPI 126
           MKF++ PI
Sbjct: 303 MKFSVHPI 307

The following BLAST results are available for this feature:

BLAST of CaUC09G174020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902031.1	4.1e-41	95.18	extensin-3-like [Benincasa hispida]	[more]
XP_008459215.1	3.3e-38	87.95	PREDICTED: extensin, partial [Cucumis melo]	[more]
TYK13568.1	3.3e-38	87.95	extensin [Cucumis melo var. makuwa]	[more]
XP_011649199.1	2.8e-37	84.52	leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN61733.1 hypoth...	[more]
XP_023512234.1	1.2e-32	78.82	uncharacterized protein LOC111777023 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC09G174020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G174020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQT7	1.6e-38	87.95	Extensin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00480 PE=4 ...	[more]
A0A1S3CAV5	1.6e-38	87.95	extensin OS=Cucumis melo OX=3656 GN=LOC103498405 PE=4 SV=1	[more]
A0A0A0LIT9	1.3e-37	84.52	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G234585...	[more]
A0A6J1FUQ3	5.4e-31	66.07	alpha carbonic anhydrase 8-like OS=Cucurbita moschata OX=3662 GN=LOC111448602 PE...	[more]
A0A6J1G5T9	1.3e-29	73.75	extensin-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111451078 PE=4 SV=1	[more]

BLAST of CaUC09G174020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15780.1	7.0e-23	57.32	Cupredoxin superfamily protein	[more]
AT2G15770.1	9.5e-12	36.59	Cupredoxin superfamily protein	[more]
AT4G33930.1	1.1e-07	37.36	Cupredoxin superfamily protein	[more]
AT4G34300.1	1.2e-06	35.29	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 2..128 e-value: 8.6E-11 score: 43.9
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 45..123
None	No IPR available	PANTHER	PTHR34052:SF1	GLYCINE-RICH PROTEIN-LIKE	coord: 45..127
None	No IPR available	PANTHER	PTHR34052	GLYCINE-RICH PROTEIN-LIKE	coord: 45..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G174020.1	CaUC09G174020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity