CaUC09G172870 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G172870
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionCRM domain-containing protein
LocationCiama_Chr09: 28948533 .. 28953382 (-)
RNA-Seq ExpressionCaUC09G172870
SyntenyCaUC09G172870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGGGTTGCGCTCTATCCATCACCATTTCAAGGTACTTTTCTCCATCTCTTTAAATCTCATGGGTTTCATTCAATAGTTTTGGAATCGAATATATTTCCATATTTATCAAATTCATCTTAACAGAGTATATCTTCTCGTTTAAATCTGTAGTACTCATTATTTTGCATTATAACTAGAATTTTTTTAAGTAGATTTCATTTTGTCTATCAGATTTTCCATCTATGTATACATTTTCCCTTTGGAGGCATATTGAATTGGATGATTGTGATGTGATGTTTATGCAGGGATTCATTGTTTGGATTCATTTCTTTGATTAGAAATGTGTCACATCTATCTTTATTGAACATACCTGCATCGTTTGGGCAGTCTTCATATGGAAGTTGTGAGCATCAAATAAGTAATCGTACAGTAAAGTCTCTCCAAGAATCAACATATATACACTGTCCGTCTGGCTTCCTTTTTACTAGGAGATATAGTATGTGGGAGAGCTTTAGTGGGTTTAAAAAATGGCAATCTGTTAGGTATTTTAGCAATGCAGCTGTGGAGCTTAAGACAGACTGCAATATTGTCAGGTTTTCTTTTGGTGAGCCTTCTAGTAGTAACGGTTCCCCACTAAAACAAAAGAAGGTGGCAAAAACCAAATTTTCTAAGAAGGCCAAATTGAATGAACTCCGACTCTATCGTCTTAAGGCAAAAAAGAAGAAGACATCCCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGTTGGATACCATCTTTAATTTATAGTTATACTTCCAGCTTATAAGTTATAATTGAGTGTTAGTCTACTCTTCCTCTATAGAAACGTGTGCCACAATCTTCTTGTGAGAGGAGTATTAGATTTCAATGTTTACTTTTCAGCTTTTCATCCATATATCATATGTTTGTTACAAGTATGAAGGTGATTGAAGTTTGATCATTTTTCATATGAACTATTTGCCACTTTTTCTCCGAATTCTTTTGCTTGACACATTTGTAAAACTATGAAAGTTTATTCTTTTGTCTGGTCTGTGTATTGACCGTGCATGACTGATGATTCATAATGTCCTGTGATTGTCATGAAAGTTTAACTTAAAGTTTCATGTAAAATCTTTTCTTTTTTATAAGAATCGTTTGTAGTAAACAAAAAGAAGTATTTCATAGAAAAATTTCAAAGCAAGAGCAAGAAGAAAAACAATTTATTTGAATCTTAAACCTTCAATGCAATGTAAGTGCATATTAAAGGTTCAGTTGAATTTTAAATTAATATTTAGGACTAATTGAATTGTTCTGAAACCTCTTAATGATCATTTTTCATATGAACTATGATGTTTTTTGATCTTTGAAGAAGCAAGTAATATATGTAGGCCAAAAGGAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTCGAGGTTCCAAAGTCTGTTATAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTATGTTCTATTGGGGAGGCGAGGAGTCTTTGGTGGTGTTGTTCTCAATATGCATTTGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTGCTCGATTAAGCAAAGGCATTGTGATTGATATTAAACCCAATAATAGCATAATTCTTTATCGGGGAAAGAACTATGTGCAACCCGAAGTAATGTCACCTCCAGATACGCTATCAAAAGACAAGGTAAGCATATTTCACTCCTTATCTGGTTTGTAAATAAGAGAGGTCCAGACCTGAGTGTAGAAGGGGAGTGATGTAACTTGTAACTAATTTTTGTGTGAAGGATTGTGTTAGGATACTTAGTAACTAGAATCAAGATCTAGAATACTTTGAAATAGAAAAATAATTACAAGATAAATCAAGTATAAAGGCACTTGAAACCAAACTCTTGAGTATGCTAACCCAAGCCCTAGATCACCCCACGAATTGCCTACCTTCACTCGCTCACCCTCCTATTTATAACAAGATTCACTAACTTCCTATTTAATTACTCGTATACCCTTTATTAATGCCATACTAATATTCTTATCTGGGTATCTTACAAAATGGCACCCAATAAGTTTGTAATTTTGTTTGTTTAGAGAAGGATGAAAGAGGAGAGACATCAGAGTAGATAATGATAGATCGAATCATGAAAGTCTATAGTTTTCCTTTAATGTTGCAATTTTCCAATTTAAGAAGCTATTGGAAAATGACTCTAGCTTTAAACAAGAAACATAACTTTTCCTATTTTTTATTGCAGGCCTTGGAAAAATACAAGTATGAACAATCACTTGAACATACAAGTCAGTTCATTGAAAAATTGGAGAAAGAACTGGAAGATTTTCAGAAGCATCTTGCTCAGTTCAAGAAGAGGAAAAAGGAAGATGCTTAGAATCCATGGTTAACTCATGATCAGTAATGTTTACCTTTTACTTGCATTTCCCACTCACCGATTGTCGTAGATGGTTGATAGCTTTGCCAAAGAGCATTTTTTTTTTTTTTAAATCTTTTTTTCTAAATCTTGTTAGTTCTAGAGTATCTAGTGTTTAAATGGGTTTTATTCCAGGAAATTGAACTTAAGAGATCGTTGGGACGTTTTAGGTGAAATTCGAGCCAAACTGGAGCACTTACCAGTTACCAGTCAATTGGAGCAACTAGGCTAAAAAAGTTTAAAATGACCAAATTGCCCTACGAAAGAGTATTGCAATGCCAAGCAATATTGGAAGGTAGTTACTATTGTGTCCTAAATCTTGTAATTTGTAAATTGTAAATAAATTATTGAATAAATAAAGTGTTATTTATTATTTGCATAACTTAAATCCAATGGTATTTAATAAGTTATCCAATGGTATTTAATGTAACTTGAATGGTATGTGGTTGGCAAATAAGTGAATTGTGTTCAAGTAATAACTTAAAAAGTGTATAGTATATGGACAAGGTTGAGTGTCTTATCTTGTTTTTTTACAAATGATTTGATTTAAATTGTTCATTTGGAGACATGTGAGTGAGGTATTTTACACAATTAGTTTGTATAAGACTAGACCATGAAATATATAATTTTTCTTTATAAACAACATAAATTGAAGAAATTAATCTATTTCAATTGTGAATGAGTTATGAATTTCTAGTTCACGTGGATCGTTTTGATTTATATGGGCGAGAGTGGCTCTAGTCACCGACTCAATATGCCTACTAGTTTGGGAATGAAGTCAAGTGGGAACTTGAGAACATAATTATACAAATAGAATTCACCACTTCCTACCTTCAAAGGGTAAGTAGATAAGTTGTTCATTGAGGATCGATAGATTGTTTATGTTTATTAGATCATGTTAGAAACCTCACAGGAAAAGTGACAGAATGCCCAAATTTCTCGAAAGTTGGCGTGTATTTGGGCATTCTGACTTTTTCTGTTAATTCCATCAACTTACGGAAAACATGAACTTACGAGAAAAATGACAGCGATCAAAAACGGCATTTCGAATTCTTTTTCTTGGTGATTTTAGATATTCTTACACATTATTAGACTTTTTTTACATGAAAATTTTGGATTTTCTTTTCCGTTTTTTATCGTTTTTTACCACGATGTATTCGAAAATCCAAAATTTTCAGAAATTAGCGTTTCAATGGACTCTAGTGAAGGAACAAGATTTTTGGGGGTGTTTATGTCATTTCACTACGTGGGACCTATCTCTGCAAAGTTGAAAATGGGTTAGAAAAATAACTTTTTTAGGTTAGTTTTGTCCCATCATAGCAATTTCCCCGATAACTTGATTTAAAACATTTTATCAGAGGTTGAGTATTAGGGTTTGCCTATATTCCATTACTATAGACAGTTTGTTTTTTTAATTTTCAATTGAGAAGGGGAATTAATGCGCTCCAAGCCAGTTCATCTTTGTGTTAACCACCGACAGAACTTCAATAAATTTGTCTTTGCTCAAAATCTAAATGATTTATTGAAAGTATGGAAACTAGAATGGAATATGTGAAAGTCCAAAGAGTAAATTATATTATAACAAAAAAAAAATAATGTTGGATTCTTCAAATGAAGATTTTTTTTTTTCTTTTGAATTTAGAAAACTCTTTTTTACTTTATTATGAATATTTTATTTTTATTTTTATTATTATTTTTTTTTATCAGGATTGAAAACTGAATTTTAAGATGGAAAATTTAGGAGCTTGAATTTAATTGGGAGTTTTTGGAGGATTTGAGTTAATTTAGAATTCTAGTGGGAAAGAGGAAATATATAGGATTTAAGTAGGAAAGAGTAAAAAGGGTAGATTTGTCTTATAAAAATAATTAGGGTTTTTAAATATTAGGTCGTATTGGGAAGCGCGTGCAAAACTCTCTCCTTCATCATCTTCTTCGTGTTTTCTTCGCCGACGTGGAAGCTTCCAAGATCGGTTTTCAAACCCCCACCGTTTTCCTCGCCGGAGTCGTGGTCGCCGCTGGTTGCTCGACTCGTTTGCCCTTAGTCGCGAAATCCGCTGCTACCTGACGTTCGTGGGTGTTCCAGTCCACCGTCCGTTCACTGTTCAAGTTGGCAGCACGCCGCCGTGCGATTCGTTCGGCCGTACGTCATCAGCGCTGCCCATTTCGTCGTCGCCGTTGTGGCCGGCCGTGGGAGTGAGTTCTCTTCTTGATTTCTTTTCCTCTCCGTTTTTCCTCCCCGATTTCACCCTTCCTCACAGGTCCGCAGCCCTTCACGCGAGACCCAGTCGTGTTCTGCCCAGCTTGTCGCCGGAAGTTTCCGGCACCGTTCTTCACTAG

mRNA sequence

ATGCCTCGGGGTTGCGCTCTATCCATCACCATTTCAAGGGATTCATTGTTTGGATTCATTTCTTTGATTAGAAATGTGTCACATCTATCTTTATTGAACATACCTGCATCGTTTGGGCAGTCTTCATATGGAAGTTGTGAGCATCAAATAAGTAATCGTACAGTAAAGTCTCTCCAAGAATCAACATATATACACTGTCCGTCTGGCTTCCTTTTTACTAGGAGATATAGTATGTGGGAGAGCTTTAGTGGGTTTAAAAAATGGCAATCTGTTAGGTATTTTAGCAATGCAGCTGTGGAGCTTAAGACAGACTGCAATATTGTCAGGTTTTCTTTTGGTGAGCCTTCTAGTAGTAACGGTTCCCCACTAAAACAAAAGAAGGTGGCAAAAACCAAATTTTCTAAGAAGGCCAAATTGAATGAACTCCGACTCTATCGTCTTAAGGCAAAAAAGAAGAAGACATCCCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGCCAAAAGGAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTCGAGGTTCCAAAGTCTGTTATAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTATGTTCTATTGGGGAGGCGAGGAGTCTTTGGTGGTGTTGTTCTCAATATGCATTTGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTGCTCGATTAAGCAAAGGCATTGTGATTGATATTAAACCCAATAATAGCATAATTCTTTATCGGGGAAAGAACTATGTGCAACCCGAAGTAATGTCACCTCCAGATACGCTATCAAAAGACAAGGGTTTGCCTATATTCCATTACTATAGACAGTCGTATTGGGAAGCGCGTGCAAAACTCTCTCCTTCATCATCTTCTTCGTGTTTTCTTCGCCGACGTGGAAGCTTCCAAGATCGGTTTTCAAACCCCCACCGTTTTCCTCGCCGGAGTCGTGGTCGCCGCTGGTTGCTCGACTCGTTTGCCCTTAGTCGCGAAATCCGCTGCTACCTGACGTTCGTGGGTGTTCCAGTCCACCGTCCGTTCACTGTTCAAGTTGGCAGCACGCCGCCGTGCGATTCGTTCGGCCGTACGTCATCAGCGCTGCCCATTTCGTCGTCGCCGTTGTGGCCGGCCGTGGGAGTGAGTTCTCTTCTTGATTTCTTTTCCTCTCCGTTTTTCCTCCCCGATTTCACCCTTCCTCACAGGTCCGCAGCCCTTCACGCGAGACCCAGTCGTGTTCTGCCCAGCTTGTCGCCGGAAGTTTCCGGCACCGTTCTTCACTAG

Coding sequence (CDS)

ATGCCTCGGGGTTGCGCTCTATCCATCACCATTTCAAGGGATTCATTGTTTGGATTCATTTCTTTGATTAGAAATGTGTCACATCTATCTTTATTGAACATACCTGCATCGTTTGGGCAGTCTTCATATGGAAGTTGTGAGCATCAAATAAGTAATCGTACAGTAAAGTCTCTCCAAGAATCAACATATATACACTGTCCGTCTGGCTTCCTTTTTACTAGGAGATATAGTATGTGGGAGAGCTTTAGTGGGTTTAAAAAATGGCAATCTGTTAGGTATTTTAGCAATGCAGCTGTGGAGCTTAAGACAGACTGCAATATTGTCAGGTTTTCTTTTGGTGAGCCTTCTAGTAGTAACGGTTCCCCACTAAAACAAAAGAAGGTGGCAAAAACCAAATTTTCTAAGAAGGCCAAATTGAATGAACTCCGACTCTATCGTCTTAAGGCAAAAAAGAAGAAGACATCCCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGCCAAAAGGAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTCGAGGTTCCAAAGTCTGTTATAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTATGTTCTATTGGGGAGGCGAGGAGTCTTTGGTGGTGTTGTTCTCAATATGCATTTGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTGCTCGATTAAGCAAAGGCATTGTGATTGATATTAAACCCAATAATAGCATAATTCTTTATCGGGGAAAGAACTATGTGCAACCCGAAGTAATGTCACCTCCAGATACGCTATCAAAAGACAAGGGTTTGCCTATATTCCATTACTATAGACAGTCGTATTGGGAAGCGCGTGCAAAACTCTCTCCTTCATCATCTTCTTCGTGTTTTCTTCGCCGACGTGGAAGCTTCCAAGATCGGTTTTCAAACCCCCACCGTTTTCCTCGCCGGAGTCGTGGTCGCCGCTGGTTGCTCGACTCGTTTGCCCTTAGTCGCGAAATCCGCTGCTACCTGACGTTCGTGGGTGTTCCAGTCCACCGTCCGTTCACTGTTCAAGTTGGCAGCACGCCGCCGTGCGATTCGTTCGGCCGTACGTCATCAGCGCTGCCCATTTCGTCGTCGCCGTTGTGGCCGGCCGTGGGAGTGAGTTCTCTTCTTGATTTCTTTTCCTCTCCGTTTTTCCTCCCCGATTTCACCCTTCCTCACAGGTCCGCAGCCCTTCACGCGAGACCCAGTCGTGTTCTGCCCAGCTTGTCGCCGGAAGTTTCCGGCACCGTTCTTCACTAG

Protein sequence

MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSKDKGLPIFHYYRQSYWEARAKLSPSSSSSCFLRRRGSFQDRFSNPHRFPRRSRGRRWLLDSFALSREIRCYLTFVGVPVHRPFTVQVGSTPPCDSFGRTSSALPISSSPLWPAVGVSSLLDFFSSPFFLPDFTLPHRSAALHARPSRVLPSLSPEVSGTVLH
Homology
BLAST of CaUC09G172870 vs. NCBI nr
Match: XP_022967603.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita maxima])

HSP 1 Score: 525.0 bits (1351), Expect = 6.5e-145
Identity = 269/309 (87.06%), Postives = 278/309 (89.97%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG ALSI ISRDSL+GFISLIRNVS LSL NIP SFGQSSY SCEHQISN   KSLQE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF FT+RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAK K SKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSI+ YRGKNYVQPEVMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DKGLPIFHY 310
           DK L  + Y
Sbjct: 301 DKALEKYKY 309

BLAST of CaUC09G172870 vs. NCBI nr
Match: XP_038886903.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 520.8 bits (1340), Expect = 1.2e-143
Identity = 268/304 (88.16%), Postives = 277/304 (91.12%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           MP G ALSI ISRDSLFG ISLIRNV HLSLLNIP SFGQSSYGSCEHQIS+ T KSLQE
Sbjct: 1   MPLGRALSIAISRDSLFGLISLIRNVPHLSLLNIPTSFGQSSYGSCEHQISSCTAKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           S  I  P GF F RRYSM ESF GFKKWQSVRYFSNAAVELKTD + VRFSFG  S++NG
Sbjct: 61  SASIPYPPGFYFARRYSMCESFGGFKKWQSVRYFSNAAVELKTDSDTVRFSFGGSSNNNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQ KVAKTK SKKAK+NELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQ-KVAKTKLSKKAKVNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+EKYDPE+LTEEEKHYLKR GEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVVEKYDPEVLTEEEKHYLKRIGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHE+AEELARLSKGIVIDIKPNNSII YRGKNYVQPEVMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEFAEELARLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DKGL 305
           DK L
Sbjct: 301 DKAL 303

BLAST of CaUC09G172870 vs. NCBI nr
Match: XP_038886904.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 518.8 bits (1335), Expect = 4.6e-143
Identity = 267/302 (88.41%), Postives = 276/302 (91.39%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           MP G ALSI ISRDSLFG ISLIRNV HLSLLNIP SFGQSSYGSCEHQIS+ T KSLQE
Sbjct: 1   MPLGRALSIAISRDSLFGLISLIRNVPHLSLLNIPTSFGQSSYGSCEHQISSCTAKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           S  I  P GF F RRYSM ESF GFKKWQSVRYFSNAAVELKTD + VRFSFG  S++NG
Sbjct: 61  SASIPYPPGFYFARRYSMCESFGGFKKWQSVRYFSNAAVELKTDSDTVRFSFGGSSNNNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQ KVAKTK SKKAK+NELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQ-KVAKTKLSKKAKVNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+EKYDPE+LTEEEKHYLKR GEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVVEKYDPEVLTEEEKHYLKRIGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHE+AEELARLSKGIVIDIKPNNSII YRGKNYVQPEVMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEFAEELARLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DK 303
           DK
Sbjct: 301 DK 301

BLAST of CaUC09G172870 vs. NCBI nr
Match: KAG7011409.1 (putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 517.3 bits (1331), Expect = 1.3e-142
Identity = 264/309 (85.44%), Postives = 278/309 (89.97%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG +LSI ISRDSL+GFISLIRNVS LSL NIP+SFGQSSY SCE+QISN   KSLQE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF F +RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFAKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAK K SKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN++LLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFMLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSI+ YRGKNYV+PEVMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVRPEVMSPPDTLSK 300

Query: 301 DKGLPIFHY 310
           DK L  + Y
Sbjct: 301 DKALEKYKY 309

BLAST of CaUC09G172870 vs. NCBI nr
Match: KAG6571683.1 (putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 514.6 bits (1324), Expect = 8.7e-142
Identity = 264/309 (85.44%), Postives = 277/309 (89.64%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG +LSI ISRDSL+GFISLIRNVS LSL NIP+SFGQSSY SCE+QISN   KSLQE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF F +RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFAKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAK K SKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN++LLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFMLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSII YRGKNYV+PEVMSP DTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIIFYRGKNYVRPEVMSPSDTLSK 300

Query: 301 DKGLPIFHY 310
           DK L  + Y
Sbjct: 301 DKALEKYKY 309

BLAST of CaUC09G172870 vs. ExPASy Swiss-Prot
Match: Q67XL4 (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-37
Identity = 92/191 (48.17%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAW 175
           SS +G    + K  K K  K+A +  L+ +R K KK+      E +I   L KA++KE  
Sbjct: 96  SSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEER 155

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L+E ++K E  +S    +DPEILT EE  Y  + G K KNYV +GRRG++ GV+LNMHLH
Sbjct: 156 LMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLH 215

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQP--EVMS 295
           WKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+II+YRGKNYVQP  E+MS
Sbjct: 216 WKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMS 275

Query: 296 PPDTLSKDKGL 305
           P  TL + K L
Sbjct: 276 PRITLPRKKAL 285

BLAST of CaUC09G172870 vs. ExPASy Swiss-Prot
Match: Q9LT57 (CRM-domain containing factor CFM9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM9 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-32
Identity = 82/189 (43.39%), Postives = 122/189 (64.55%), Query Frame = 0

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAW 175
           S+S G  ++ K  ++ +      L E+R  R K  KKK   + E R+ Y+L++AK+K A 
Sbjct: 13  STSRGRSMRSKVESRMRKESGKTLREIR--RAKKLKKKLMTDEE-RLIYNLKRAKKKVAL 72

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L++KL+K+++P+     +DPE+ T E+    K+ G K KNYV +G RGVFGGVV NMH+H
Sbjct: 73  LLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMH 132

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPP 295
           WK HETV+V C      ++ E A  +ARLS G+VI+I    +II++RG+NY QP+ + P 
Sbjct: 133 WKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPV 192

Query: 296 DTLSKDKGL 305
           +TL+K K L
Sbjct: 193 NTLTKRKAL 198

BLAST of CaUC09G172870 vs. ExPASy Swiss-Prot
Match: Q8L7C2 (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFM2 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-18
Identity = 65/200 (32.50%), Postives = 109/200 (54.50%), Query Frame = 0

Query: 113 GEPSSSNGSPLKQKKVAK-TKFSKKAKLNELRLYRLKAKKKKTS----PNPEVRIRYSLE 172
           G   + N   +K + V +  +   K + + ++ +++K++++ +         +++  +LE
Sbjct: 492 GNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALE 551

Query: 173 KAKRKEAWLIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGG 232
           K    E  L + L   E P+  +   D E +T +EK+ L++ G K K ++LLGRRGVF G
Sbjct: 552 KKANAEKVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDG 611

Query: 233 VVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIK---PNNSIILYRGK 292
            + NMHLHWK  E VK+IC        H+ AE L   S GI++ ++      +II+YRGK
Sbjct: 612 TIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGK 671

Query: 293 NYVQPEVMSPPDTLSKDKGL 305
           NY +P+ + P   LSK + L
Sbjct: 672 NYERPQCLRPQTLLSKREAL 688

BLAST of CaUC09G172870 vs. ExPASy Swiss-Prot
Match: F4J2U9 (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM3A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.3e-18
Identity = 59/150 (39.33%), Postives = 85/150 (56.67%), Query Frame = 0

Query: 166 LEKAKRKEAWLIEKLRKFEVPKSVIE--------KYDPEILTEEEKHYLKRTGEKKKNYV 225
           + K +RK A+   KL K E   + +E        + DPE +T+EE+   ++ G K K ++
Sbjct: 598 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657

Query: 226 LLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDI---KP 285
           LLGRRGVF G V NMHLHWK  E VK+I K      V + A  L   S GI++ I     
Sbjct: 658 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 717

Query: 286 NNSIILYRGKNYVQPEVMSPPDTLSKDKGL 305
             +II+YRG++Y +P ++ P + L+K K L
Sbjct: 718 GYAIIVYRGQDYKRPTMLRPKNLLTKRKAL 747

BLAST of CaUC09G172870 vs. ExPASy Swiss-Prot
Match: Q2R1U8 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=CFM3 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-17
Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = 0

Query: 153 KTSPNPEVRIRYSLEKAK-----RKEAWLIE-KLRKFEVPKSVIEKYD-----------P 212
           K   N E ++  ++E A+     RK  W ++   +K E  + V+ K +           P
Sbjct: 530 KLDENYENKMTRTVEAARHADLVRKLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPP 589

Query: 213 EILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVH 272
           E +T+EE+   ++ G + K ++LLGRRGVF G + NMHLHWK  E VK++ K    G V 
Sbjct: 590 ETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVK 649

Query: 273 EYAEELARLSKGIVID---IKPNNSIILYRGKNYVQPEVMSPPDTLSKDKGL 305
           + A  L   S GI++    +    +I+++RGK+Y +P  + P + LSK K L
Sbjct: 650 KIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPRNLLSKRKAL 701

BLAST of CaUC09G172870 vs. ExPASy TrEMBL
Match: A0A6J1HVJ0 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467053 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 3.1e-145
Identity = 269/309 (87.06%), Postives = 278/309 (89.97%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG ALSI ISRDSL+GFISLIRNVS LSL NIP SFGQSSY SCEHQISN   KSLQE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF FT+RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAK K SKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSI+ YRGKNYVQPEVMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DKGLPIFHY 310
           DK L  + Y
Sbjct: 301 DKALEKYKY 309

BLAST of CaUC09G172870 vs. ExPASy TrEMBL
Match: A0A6J1HK68 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463795 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 4.2e-142
Identity = 264/309 (85.44%), Postives = 277/309 (89.64%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG +LSI ISRDSL+GFISLIRNVS LSL NIP+SFGQSSY SCE+QISN   KSLQE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF F +RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFAKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAK K SKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN++LLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFMLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSII YRGKNYV+PEVMSP DTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIIFYRGKNYVRPEVMSPSDTLSK 300

Query: 301 DKGLPIFHY 310
           DK L  + Y
Sbjct: 301 DKALEKYKY 309

BLAST of CaUC09G172870 vs. ExPASy TrEMBL
Match: A0A1S3C151 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495436 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 2.3e-140
Identity = 262/310 (84.52%), Postives = 276/310 (89.03%), Query Frame = 0

Query: 1   MPRGCALS-ITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQ 60
           MPR    S ITISR SLFGF SLIRN S LSLL++P SFGQSS+GSCEHQ S+R VKSL 
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSN 120
           EST   CP G   T RYSMWES+ GFK+WQSVR+FSNA VELKTD N VRFSFG PSS+N
Sbjct: 61  ESTSRDCPPGSSLTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTN 120

Query: 121 GSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180
           GS LKQKKVAKTK SKK KLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSQLKQKKVAKTKLSKKDKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PKSV+EKYDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKSVVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL+RLSKGIVIDIKPNNSII YRGKNYVQPEVMSPPDTLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLS 300

Query: 301 KDKGLPIFHY 310
           KDK L  + Y
Sbjct: 301 KDKALEKYRY 309

BLAST of CaUC09G172870 vs. ExPASy TrEMBL
Match: A0A6J1CKB1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012231 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 5.7e-139
Identity = 256/309 (82.85%), Postives = 272/309 (88.03%), Query Frame = 0

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           MPRG  LS  ++R+SL GFISLIRNVS  SL NIPASFGQS YGSCEHQ SN  V  LQE
Sbjct: 1   MPRGRNLSNAVTRNSLVGFISLIRNVSRRSLSNIPASFGQSKYGSCEHQRSNHIVTPLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST IH P GFLF+RRY++ E   GFKKWQS R+F + AVELKTD NIVRFSFG PS +NG
Sbjct: 61  STSIHFPPGFLFSRRYNVPEFLGGFKKWQSFRHFRSVAVELKTDSNIVRFSFGRPSVTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAKTK SKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPPKQKKVAKTKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEV K V+EKYDPEILTEEEKH+LKRTGEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVSKPVVEKYDPEILTEEEKHFLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEEL RLSKGIV+DIKPNN+II YRGKNYVQPEVMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVVDIKPNNAIIFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DKGLPIFHY 310
           DK +  + Y
Sbjct: 301 DKAMEKYKY 309

BLAST of CaUC09G172870 vs. ExPASy TrEMBL
Match: A0A5A7SK96 (Putative CRM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002570 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 6.3e-138
Identity = 254/298 (85.23%), Postives = 268/298 (89.93%), Query Frame = 0

Query: 12  SRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQESTYIHCPSGFL 71
           S  SLFGF SLIRN S LSLL++P SFGQSS+GSCEHQ S+R VKSL EST   CP G  
Sbjct: 102 SGGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLNESTSRDCPPGSS 161

Query: 72  FTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPLKQKKVAKT 131
            T RYSMWES+ GFK+WQSVR+FSNA VELKTD N VRFSFG PSS+NGS LKQKKVAKT
Sbjct: 162 LTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTNGSQLKQKKVAKT 221

Query: 132 KFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVPKSVIE 191
           K SKK KLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFE+PKSV+E
Sbjct: 222 KLSKKDKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEIPKSVVE 281

Query: 192 KYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKP 251
           KYDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMH+HWKKHETVKVICKPCKP
Sbjct: 282 KYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKP 341

Query: 252 GQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSKDKGLPIFHY 310
           GQVHEYAEEL+RLSKGIVIDIKPNNSII YRGKNYVQPEVMSPPDTLSKDK L  + Y
Sbjct: 342 GQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLSKDKALEKYRY 398

BLAST of CaUC09G172870 vs. TAIR 10
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 336.7 bits (862), Expect = 3.0e-92
Identity = 173/250 (69.20%), Postives = 200/250 (80.00%), Query Frame = 0

Query: 64  IHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPL 123
           + C S      +   W  F+ +    S RY SN+ +EL+TD N+VRF+F   SSS  + +
Sbjct: 46  VQCKSASFDVSQAQRWNLFA-YDGLFSRRYLSNSTIELRTDDNVVRFAFNNVSSSGNNVV 105

Query: 124 ---KQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 183
              K+KK  + K S+KAK+NELR YRLKAKKK  SPNPEVRIRY LEKAKRKE WLIEKL
Sbjct: 106 PTRKEKKWKRAKLSRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKL 165

Query: 184 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 243
           RK++VPKS  E YDPE LTEEE+HYLKRTGEK+KN+VL+GRRGVFGGVVLN+HLHWKKHE
Sbjct: 166 RKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHE 225

Query: 244 TVKVICKPC-KPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLS 303
           TVKVICKPC KPGQVHEYAEELARLSKGIVID+KPNN+I+LYRGKNYV+PEVMSP DTLS
Sbjct: 226 TVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLS 285

Query: 304 KDKGLPIFHY 310
           KDK L  + Y
Sbjct: 286 KDKALEKYRY 294

BLAST of CaUC09G172870 vs. TAIR 10
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 187.2 bits (474), Expect = 3.0e-47
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0

Query: 123 LKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRK 182
           LK K+  + +    A   + R   +K KKKK   N E RI+Y LEKAK KEA LIE+L++
Sbjct: 90  LKLKRKKEREERNAANRKDPRRLTVKGKKKK-FVNAEERIKYKLEKAKIKEALLIERLKR 149

Query: 183 FEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETV 242
           +EV K    +  P  +T EE+ YLK+ G+K+ NYV +GRRGVFGGV+LNMHLHWKKHETV
Sbjct: 150 YEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETV 209

Query: 243 KVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPPDTLSKDK 302
           KVIC   KPGQV +YAEELA+LS G+ ++I  +++II YRGK YVQP+VMSP DTLSK +
Sbjct: 210 KVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKKR 268

BLAST of CaUC09G172870 vs. TAIR 10
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-38
Identity = 92/191 (48.17%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAW 175
           SS +G    + K  K K  K+A +  L+ +R K KK+      E +I   L KA++KE  
Sbjct: 96  SSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEER 155

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L+E ++K E  +S    +DPEILT EE  Y  + G K KNYV +GRRG++ GV+LNMHLH
Sbjct: 156 LMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLH 215

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQP--EVMS 295
           WKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+II+YRGKNYVQP  E+MS
Sbjct: 216 WKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMS 275

Query: 296 PPDTLSKDKGL 305
           P  TL + K L
Sbjct: 276 PRITLPRKKAL 285

BLAST of CaUC09G172870 vs. TAIR 10
Match: AT3G25440.2 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-38
Identity = 92/191 (48.17%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAW 175
           SS +G    + K  K K  K+A +  L+ +R K KK+      E +I   L KA++KE  
Sbjct: 32  SSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEER 91

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L+E ++K E  +S    +DPEILT EE  Y  + G K KNYV +GRRG++ GV+LNMHLH
Sbjct: 92  LMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLH 151

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQP--EVMS 295
           WKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+II+YRGKNYVQP  E+MS
Sbjct: 152 WKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMS 211

Query: 296 PPDTLSKDKGL 305
           P  TL + K L
Sbjct: 212 PRITLPRKKAL 221

BLAST of CaUC09G172870 vs. TAIR 10
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-34
Identity = 82/189 (43.39%), Postives = 122/189 (64.55%), Query Frame = 0

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAW 175
           S+S G  ++ K  ++ +      L E+R  R K  KKK   + E R+ Y+L++AK+K A 
Sbjct: 13  STSRGRSMRSKVESRMRKESGKTLREIR--RAKKLKKKLMTDEE-RLIYNLKRAKKKVAL 72

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L++KL+K+++P+     +DPE+ T E+    K+ G K KNYV +G RGVFGGVV NMH+H
Sbjct: 73  LLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMH 132

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPEVMSPP 295
           WK HETV+V C      ++ E A  +ARLS G+VI+I    +II++RG+NY QP+ + P 
Sbjct: 133 WKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPV 192

Query: 296 DTLSKDKGL 305
           +TL+K K L
Sbjct: 193 NTLTKRKAL 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022967603.16.5e-14587.06uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
XP_038886903.11.2e-14388.16uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X... [more]
XP_038886904.14.6e-14388.41uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X... [more]
KAG7011409.11.3e-14285.44putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma su... [more]
KAG6571683.18.7e-14285.44putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyro... [more]
Match NameE-valueIdentityDescription
Q67XL41.6e-3748.17Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid... [more]
Q9LT571.2e-3243.39CRM-domain containing factor CFM9, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q8L7C21.3e-1832.50CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
F4J2U96.3e-1839.33CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t... [more]
Q2R1U83.1e-1733.72CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
Match NameE-valueIdentityDescription
A0A6J1HVJ03.1e-14587.06uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb... [more]
A0A6J1HK684.2e-14285.44uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb... [more]
A0A1S3C1512.3e-14084.52uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumi... [more]
A0A6J1CKB15.7e-13982.85uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Momord... [more]
A0A5A7SK966.3e-13885.23Putative CRM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
AT4G13070.13.0e-9269.20RNA-binding CRS1 / YhbY (CRM) domain protein [more]
AT2G28480.13.0e-4756.67RNA-binding CRS1 / YhbY (CRM) domain protein [more]
AT3G25440.11.1e-3848.17RNA-binding CRS1 / YhbY (CRM) domain protein [more]
AT3G25440.21.1e-3848.17RNA-binding CRS1 / YhbY (CRM) domain protein [more]
AT3G27550.18.4e-3443.39RNA-binding CRS1 / YhbY (CRM) domain protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 198..282
e-value: 1.0E-21
score: 88.1
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 198..282
e-value: 4.8E-19
score: 68.3
IPR001890RNA-binding, CRM domainPROSITEPS51295CRMcoord: 196..293
score: 19.866453
IPR035920YhbY-like superfamilyGENE3D3.30.110.60coord: 197..294
e-value: 2.1E-22
score: 81.1
IPR035920YhbY-like superfamilySUPERFAMILY75471YhbY-likecoord: 197..292
NoneNo IPR availablePANTHERPTHR31426:SF3OS06G0304500 PROTEINcoord: 78..309
IPR040286CRM domain-containing protein At3g25440-likePANTHERPTHR31426GROUP II INTRON SPLICING FACTOR CRS1-LIKEcoord: 78..309

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G172870.1CaUC09G172870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding