CaUC09G172710 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G172710
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr09: 28213885 .. 28214154 (-)
RNA-Seq Expression	CaUC09G172710
Synteny	CaUC09G172710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTAATGATTAGAGAGTCCAACAGATTGGTGGTTTTGGCTGCGTCTAAGTGCATTCCAAATGGAGTTCAGGGGTGGGAGGCGGAAGCTTTAGCCCTCTTGTTCGGTTTGAATGCTGTACATCGGCTGGAAGTTCCAAATCTCTTGGTCAAGCTTTGGTCAACTTCATTTATCCGGTCACTGCACCTAAGATCAATCCGGGTGAAAAGACTATATTGTCCCCAAGTTTTGTTAACTGACGACTACCCAACAAACTCCAACATGTAA

mRNA sequence

ATGGGAGTAATGATTAGAGAGTCCAACAGATTGGTGGTTTTGGCTGCGTCTAAGTGCATTCCAAATGGAGTTCAGGGGTGGGAGGCGGAAGCTTTAGCCCTCTTGTTCGGTTTGAATGCTGTACATCGGCTGGAAGTTCCAAATCTCTTGGTCAAGCTTTGGTCAACTTCATTTATCCGGTCACTGCACCTAAGATCAATCCGGGTGAAAAGACTATATTGTCCCCAAGTTTTGTTAACTGACGACTACCCAACAAACTCCAACATGTAA

Coding sequence (CDS)

ATGGGAGTAATGATTAGAGAGTCCAACAGATTGGTGGTTTTGGCTGCGTCTAAGTGCATTCCAAATGGAGTTCAGGGGTGGGAGGCGGAAGCTTTAGCCCTCTTGTTCGGTTTGAATGCTGTACATCGGCTGGAAGTTCCAAATCTCTTGGTCAAGCTTTGGTCAACTTCATTTATCCGGTCACTGCACCTAAGATCAATCCGGGTGAAAAGACTATATTGTCCCCAAGTTTTGTTAACTGACGACTACCCAACAAACTCCAACATGTAA

Protein sequence

MGVMIRESNRLVVLAASKCIPNGVQGWEAEALALLFGLNAVHRLEVPNLLVKLWSTSFIRSLHLRSIRVKRLYCPQVLLTDDYPTNSNM

Homology

The following BLAST results are available for this feature:

BLAST of CaUC09G172710 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC09G172710 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC09G172710 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC09G172710 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..63 e-value: 2.6E-6 score: 27.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G172710.1	CaUC09G172710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity