CaUC09G171050 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G171050
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	Ciama_Chr09: 19839070 .. 19840172 (+)
RNA-Seq Expression	CaUC09G171050
Synteny	CaUC09G171050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGCCTGCAACAGGTAAAGATATACATATAACTAAATTAGTAAAGCAAGTGATTGATAAAACTAAAGTGAGCTGATACAAATTCAAAACAGATAATATTGTGTTGATATTCTGACATAAAGATTAATGCACAAATTTTAAGACTCCGTAAATGTTAAACAAAACAGACAACCTAATACATCTACAAAATACATTATAAATTTGTTGCTTTTTTCTCTTCTTTTATTTGATGTACCAATATCCCGTAGTTGGAGAAAAATAGATTTCAAGATATAGTATACTTGTTCTTAGATAGTCTTAGTGCTATGACTTCATGCAATATGTTTTTGCTGAAGAGACTTGATTAGGAAAGCAACAAAGCAACAAATATGAAGTGCTAAAGTTATTTTAGATTTTATAAATATTTTTGAGAGAGGAGGAAGGAAGAAAGCAACAAATTTATAATGTATTTTGTAGATGTATTAGGTTGTCTGTTTTGTTTAACATTTACGGAGTCTTAAAATTTGTGCATTAATCTTTATGTCAGAATATCAACACAATATTATCTGTTTTGAATTTGTATCAGCTCACTTTAGTTTTATCAATCACTTGCTTTACTAATTTAGTTATATGTATATCTTTACCTGTTGCAGGCCAATCATGTTCTTCTGGAAGAAATAAGGGAAATAAACCAGCGTCTTATTGACACTGTGGTTGTAATCAGTGATGAAGTAGTTGATGCAAGTGCTTTAGCGGCTGCTGCTGCTGATGGGAGTGAAGGAACAATTGTCAAATGTTCTTTTAGTGCTGTGGCTCTCAGTCCCAGCTTAAAATCCCAGTACACTTCTGCACAAATGGTGGGGCTATTTTTTGCATATCAGGTTCTTCATTGTCTGCACAATTATCTGTTTCTTACACGTGCATTTTTATTTTGCAGTCTCCAATTCAGCCTCTACTGTTACTTGTTCCTACAAATTATCCAAATTGTTCTCCGATACTCTTAGACAAGTTTCTTGTTGAAGTCAGGTTTGTTGGTTCAGGGTTTTGTTGGTCATCTGTTTTTCTTTTCTTAACAAATACAGTTCTATCTTCCACTAACCCTTCTTCCCAAAACAGATAA

mRNA sequence

ATGATTGGCCTGCAACAGGCCAATCATGTTCTTCTGGAAGAAATAAGGGAAATAAACCAGCGTCTTATTGACACTGTGGTTGTAATCAGTGATGAAGTAGTTGATGCAAGTGCTTTAGCGGCTGCTGCTGCTGATGGGAGTGAAGGAACAATTGTCAAATGTTCTTTTAGTGCTGTGGCTCTCAGTCCCAGCTTAAAATCCCAGTACACTTCTGCACAAATGTCTCCAATTCAGCCTCTACTGTTACTTGTTCCTACAAATTATCCAAATTGTTCTCCGATACTCTTAGACAAGTTTCTTGTTGAAGTCAGGTTTGTTGGTTCAGGGTTTTGTTGGTCATCTGTTTTTCTTTTCTTAACAAATACAGTTCTATCTTCCACTAACCCTTCTTCCCAAAACAGATAA

Coding sequence (CDS)

ATGATTGGCCTGCAACAGGCCAATCATGTTCTTCTGGAAGAAATAAGGGAAATAAACCAGCGTCTTATTGACACTGTGGTTGTAATCAGTGATGAAGTAGTTGATGCAAGTGCTTTAGCGGCTGCTGCTGCTGATGGGAGTGAAGGAACAATTGTCAAATGTTCTTTTAGTGCTGTGGCTCTCAGTCCCAGCTTAAAATCCCAGTACACTTCTGCACAAATGTCTCCAATTCAGCCTCTACTGTTACTTGTTCCTACAAATTATCCAAATTGTTCTCCGATACTCTTAGACAAGTTTCTTGTTGAAGTCAGGTTTGTTGGTTCAGGGTTTTGTTGGTCATCTGTTTTTCTTTTCTTAACAAATACAGTTCTATCTTCCACTAACCCTTCTTCCCAAAACAGATAA

Protein sequence

MIGLQQANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSLKSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVRFVGSGFCWSSVFLFLTNTVLSSTNPSSQNR

Homology

[Close]

BLAST of CaUC09G171050 vs. NCBI nr
Match: XP_038887614.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 99/113 (87.61%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1201 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1260

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVRFVGSGFCWSSVFLF 119
            KSQYTSAQMSPIQPL LLVPTNYPNCSP+LLDKF VEVRFV  G C+  V  F
Sbjct: 1261 KSQYTSAQMSPIQPLRLLVPTNYPNCSPVLLDKFPVEVRFV-HGICFLFVICF 1311

[Close]

BLAST of CaUC09G171050 vs. NCBI nr
Match: XP_008455247.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo] >KAA0031519.1 mediator of RNA polymerase II transcription subunit 15a [Cucumis melo var. makuwa] >TYK06972.1 mediator of RNA polymerase II transcription subunit 15a [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGT+VKCSFSAVALSPSL
Sbjct: 1191 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTVVKCSFSAVALSPSL 1250

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEV 104
            KSQYTSAQMSPIQPL LLVPTNYPNCSPILLDKF VEV
Sbjct: 1251 KSQYTSAQMSPIQPLRLLVPTNYPNCSPILLDKFSVEV 1287

[Close]

BLAST of CaUC09G171050 vs. NCBI nr
Match: XP_022963530.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1104 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1163

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVR 105
            KSQY SAQMSPIQPL LLVPTNYPNCSPILLDKF VEVR
Sbjct: 1164 KSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVR 1201

[Close]

BLAST of CaUC09G171050 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1183 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1242

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVR 105
            KSQY SAQMSPIQPL LLVPTNYPNCSPILLDKF VEVR
Sbjct: 1243 KSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVR 1280

[Close]

BLAST of CaUC09G171050 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1188 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1247

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVR 105
            KSQY SAQMSPIQPL LLVPTNYPNCSPILLDKF VEVR
Sbjct: 1248 KSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVR 1285

[Close]

BLAST of CaUC09G171050 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-20
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISD--EVVDASALAAAAADGSEGTIVKCSFSAVALSP 65
            +  H LLEEI+EINQRLIDTVV ISD  +  D S +A ++  G EGT V+ SF AV+LSP
Sbjct: 1168 ETEHALLEEIKEINQRLIDTVVEISDDEDAADPSEVAISSI-GCEGTTVRFSFIAVSLSP 1227

Query: 66   SLKSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVE 103
            +LK+  +S QMSPIQPL LLVP +YPN SP LLDK  VE
Sbjct: 1228 ALKAHLSSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVE 1265

[Close]

BLAST of CaUC09G171050 vs. ExPASy Swiss-Prot
Match: Q9SHV7 (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-08
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 9   HVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSLKSQ 68
           + LL+EI+E N RL++TVV I DE              S GTIV C+++ VALS + K  
Sbjct: 774 YALLQEIKETNGRLVETVVEICDE-------------DSLGTIVTCTYAPVALSATFKDH 833

Query: 69  YTSAQM----------SPIQPLLLLVPTNYPNCSPILLDK 99
           Y S ++          + IQPL LL P +YP  SPI+L++
Sbjct: 834 YKSGKIIFYVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEE 860

[Close]

BLAST of CaUC09G171050 vs. ExPASy TrEMBL
Match: A0A5D3C6P8 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002870 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGT+VKCSFSAVALSPSL
Sbjct: 1191 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTVVKCSFSAVALSPSL 1250

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEV 104
            KSQYTSAQMSPIQPL LLVPTNYPNCSPILLDKF VEV
Sbjct: 1251 KSQYTSAQMSPIQPLRLLVPTNYPNCSPILLDKFSVEV 1287

[Close]

BLAST of CaUC09G171050 vs. ExPASy TrEMBL
Match: A0A1S3C0H1 (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGT+VKCSFSAVALSPSL
Sbjct: 1191 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTVVKCSFSAVALSPSL 1250

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEV 104
            KSQYTSAQMSPIQPL LLVPTNYPNCSPILLDKF VEV
Sbjct: 1251 KSQYTSAQMSPIQPLRLLVPTNYPNCSPILLDKFSVEV 1287

[Close]

BLAST of CaUC09G171050 vs. ExPASy TrEMBL
Match: A0A6J1HVE4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1104 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1163

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVR 105
            KSQY SAQMSPIQPL LLVPTNYPNCSPILLDKF VEVR
Sbjct: 1164 KSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVR 1201

[Close]

BLAST of CaUC09G171050 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1188 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1247

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVR 105
            KSQY SAQMSPIQPL LLVPTNYPNCSPILLDKF VEVR
Sbjct: 1248 KSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVR 1285

[Close]

BLAST of CaUC09G171050 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSL 65
            +ANHVLLEEIREINQRLIDTVVVISDEVVD SAL AAAADGSEGTIVKCSFSAVALSPSL
Sbjct: 1188 EANHVLLEEIREINQRLIDTVVVISDEVVDPSAL-AAAADGSEGTIVKCSFSAVALSPSL 1247

Query: 66   KSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVEVR 105
            KSQY SAQMSPIQPL LLVPTNYPNCSPILLDKF VEVR
Sbjct: 1248 KSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVR 1285

[Close]

BLAST of CaUC09G171050 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-21
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 6    QANHVLLEEIREINQRLIDTVVVISD--EVVDASALAAAAADGSEGTIVKCSFSAVALSP 65
            +  H LLEEI+EINQRLIDTVV ISD  +  D S +A ++  G EGT V+ SF AV+LSP
Sbjct: 1168 ETEHALLEEIKEINQRLIDTVVEISDDEDAADPSEVAISSI-GCEGTTVRFSFIAVSLSP 1227

Query: 66   SLKSQYTSAQMSPIQPLLLLVPTNYPNCSPILLDKFLVE 103
            +LK+  +S QMSPIQPL LLVP +YPN SP LLDK  VE
Sbjct: 1228 ALKAHLSSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVE 1265

[Close]

BLAST of CaUC09G171050 vs. TAIR 10
Match: AT2G10440.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 1628 Blast hits to 1350 proteins in 149 species: Archae - 0; Bacteria - 39; Metazoa - 480; Fungi - 159; Plants - 187; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9   HVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSLKSQ 68
           + LL+EI+E N RL++TVV I DE              S GTIV C+++ VALS + K  
Sbjct: 694 YALLQEIKETNGRLVETVVEICDE-------------DSLGTIVTCTYAPVALSATFKDH 753

Query: 69  YTSAQMSPIQPLLLLVPTNYPNCSPILLDK 99
           Y S +++ IQPL LL P +YP  SPI+L++
Sbjct: 754 YKSGKIAQIQPLRLLFPMDYPYSSPIVLEE 770

[Close]

BLAST of CaUC09G171050 vs. TAIR 10
Match: AT2G10440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 8319 Blast hits to 5104 proteins in 317 species: Archae - 0; Bacteria - 285; Metazoa - 1706; Fungi - 535; Plants - 320; Viruses - 18; Other Eukaryotes - 5455 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-09
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 9   HVLLEEIREINQRLIDTVVVISDEVVDASALAAAAADGSEGTIVKCSFSAVALSPSLKSQ 68
           + LL+EI+E N RL++TVV I DE              S GTIV C+++ VALS + K  
Sbjct: 774 YALLQEIKETNGRLVETVVEICDE-------------DSLGTIVTCTYAPVALSATFKDH 833

Query: 69  YTSAQM----------SPIQPLLLLVPTNYPNCSPILLDK 99
           Y S ++          + IQPL LL P +YP  SPI+L++
Sbjct: 834 YKSGKIIFYVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEE 860

The following BLAST results are available for this feature:

BLAST of CaUC09G171050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887614.1	1.1e-39	87.61	mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]	[more]
XP_008455247.1	2.2e-37	93.88	PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo...	[more]
XP_022963530.1	2.9e-37	93.94	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi...	[more]
KAG6571702.1	2.9e-37	93.94	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]
XP_022963528.1	2.9e-37	93.94	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

BLAST of CaUC09G171050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	3.3e-20	61.62	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]
Q9SHV7	6.5e-08	40.00	Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ...	[more]

BLAST of CaUC09G171050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6P8	1.1e-37	93.88	Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak...	[more]
A0A1S3C0H1	1.1e-37	93.88	mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ...	[more]
A0A6J1HVE4	1.4e-37	93.94	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1HR60	1.4e-37	93.94	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1HI15	1.4e-37	93.94	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]

BLAST of CaUC09G171050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	2.4e-21	61.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G10440.2	1.7e-11	44.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G10440.1	4.6e-09	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 7..103
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 7..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G171050.1	CaUC09G171050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity