CaUC09G169600 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G169600
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Location	Ciama_Chr09: 13267678 .. 13268597 (-)
RNA-Seq Expression	CaUC09G169600
Synteny	CaUC09G169600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTAGACAGTGAGCCCTCCCCTTTCTGACTAGACTGACTCTCAGGGTCAATCTCCTCCGGAGCATGTTGCACAGCCACTCATTCGGTGTACAATACTAATACGTTATTGTTCTGACATTCGGTCAAGACTGGCAACGAGTTTTATGTTGGTGGGGAGGGGCGAAGCAGCTTTACCGATAGGGAGAGGGGCGCTTTGTTTTCGTTTTCGTTTTCTTAACGCCTCATTTCCCTTTTCTCGAAACACTAACGAAATCGTGGTTTCCTGAAGAATGTTAACTTCGATAATCCATAGAATAAAACAGCATCTTTGGTGAAGCAAAGAGCGGTTCGGTCAGAAGCATCTACCGTGCACTCAATCCAATAAGCAAGTGCATAAGGAAGACGAATCTCTTTCTTTTTCAGTATTCAATTAGGCAATCAGGGCTAAAGCACATACATATAGAGAGGAGCAAAAGACAGATGTGCTAGTTAGATAATAATTTCCAGGATCCGCCGACGGTATTTGATTGATCTCGTGGGTACGAATGACTTTCTGAAATTCTACCCCGAAGAATACATTCTAGTAACTTCGAACTTTGTTGAATCAACTATCTTGAATGCAAAGCCCCTTTTTCAAAAGAGCTAGAAATGGGTATTAAACAAAGGACATAGTGGGATAGGTAAAAAAAAGAATAGCTTATTCCTCCGTCTCTCATATGGGTTTCATAATTATAGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCACTGTGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATAGCCCCCAATTCCAAAAAGCTTTACGACTTACAATATCTTATCGATGGCTTCCCTTGCATTGCC

mRNA sequence

ATGCAGTCTAGACAGATCCGCCGACGGTATTTGATTGATCTCGTGGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCACTGTGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATAGCCCCCAATTCCAAAAAGCTTTACGACTTACAATATCTTATCGATGGCTTCCCTTGCATTGCC

Coding sequence (CDS)

ATGCAGTCTAGACAGATCCGCCGACGGTATTTGATTGATCTCGTGGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATTGGCACTGTGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATAGCCCCCAATTCCAAAAAGCTTTACGACTTACAATATCTTATCGATGGCTTCCCTTGCATTGCC

Protein sequence

MQSRQIRRRYLIDLVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKLYDLQYLIDGFPCIA

Homology

[Close]

BLAST of CaUC09G169600 vs. NCBI nr
Match: AES68444.1 (NADH-ubiquinone/plastoquinone (complex I) protein [Medicago truncatula])

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-15
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLYD 73
           ++GIGSISD GLNG +LQIISHGFIG  LFFLAGTSYD++R +YLDE   I PN+K + D
Sbjct: 62  ILGIGSISDIGLNGTVLQIISHGFIGATLFFLAGTSYDKLRFLYLDEMDGIGPNAKNIQD 121

Query: 74  LQYL 75
           L++L
Sbjct: 122 LKFL 125

[Close]

BLAST of CaUC09G169600 vs. NCBI nr
Match: YP_009473667.1 (NdhD [Impatiens piufanensis] >AVI69923.1 NdhD [Impatiens piufanensis])

HSP 1 Score: 90.1 bits (222), Expect = 9.5e-15
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLY 70
           ++GIGSI+DTGLNGAILQIISHGFIGT LFFLAGTSYDRIRL YLDE   IA   KK++
Sbjct: 317 IIGIGSITDTGLNGAILQIISHGFIGTALFFLAGTSYDRIRLAYLDEMGGIAIPMKKIF 375

[Close]

BLAST of CaUC09G169600 vs. NCBI nr
Match: QLI53753.1 (NADH dehydrogenase subunit 4 [Schefflera digitata])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           L+GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 307 LIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 354

[Close]

BLAST of CaUC09G169600 vs. NCBI nr
Match: YP_009669617.1 (NADH dehydrogenase subunit D [Oxalis drummondii] >ADD29827.1 NADH-plastoquinone oxidoreductase subunit 4 protein [Oxalis latifolia] >QCW94902.1 NADH dehydrogenase subunit D [Oxalis drummondii])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL 69
           ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Sbjct: 317 ILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIKI 371

[Close]

BLAST of CaUC09G169600 vs. NCBI nr
Match: YP_009973537.1 (NADH-plastoquinone oxidoreductase subunit 4 [Oxalis corniculata] >QNH92988.1 NADH-plastoquinone oxidoreductase subunit 4 [Oxalis corniculata] >QPK76653.1 NADH-plastoquinone oxidoreductase subunit 4 [Oxalis corniculata])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL 69
           ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Sbjct: 317 ILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIKI 371

[Close]

BLAST of CaUC09G169600 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 317 IIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 364

[Close]

BLAST of CaUC09G169600 vs. ExPASy Swiss-Prot
Match: Q7YJT3 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=ndhD PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-17
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           L+GIGSI+DTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 319 LIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 366

[Close]

BLAST of CaUC09G169600 vs. ExPASy Swiss-Prot
Match: Q68RV6 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng OX=4054 GN=ndhD PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-17
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           L+GIGSI+DTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 317 LIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 364

[Close]

BLAST of CaUC09G169600 vs. ExPASy Swiss-Prot
Match: Q0G9R2 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Daucus carota OX=4039 GN=ndhD PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           L+GIGSI+DTGLNGAILQI+SHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 317 LIGIGSINDTGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLDEM 364

[Close]

BLAST of CaUC09G169600 vs. ExPASy Swiss-Prot
Match: Q49KU8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhD PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.2e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           ++GIGSI+DTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 318 IIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 365

[Close]

BLAST of CaUC09G169600 vs. ExPASy TrEMBL
Match: G7IVM5 (NADH-ubiquinone/plastoquinone (Complex I) protein OS=Medicago truncatula OX=3880 GN=MTR_3g008330 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-15
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLYD 73
           ++GIGSISD GLNG +LQIISHGFIG  LFFLAGTSYD++R +YLDE   I PN+K + D
Sbjct: 62  ILGIGSISDIGLNGTVLQIISHGFIGATLFFLAGTSYDKLRFLYLDEMDGIGPNAKNIQD 121

Query: 74  LQYL 75
           L++L
Sbjct: 122 LKFL 125

[Close]

BLAST of CaUC09G169600 vs. ExPASy TrEMBL
Match: A0A2P1BYE3 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Impatiens piufanensis OX=1752765 GN=ndhD PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-15
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLY 70
           ++GIGSI+DTGLNGAILQIISHGFIGT LFFLAGTSYDRIRL YLDE   IA   KK++
Sbjct: 317 IIGIGSITDTGLNGAILQIISHGFIGTALFFLAGTSYDRIRLAYLDEMGGIAIPMKKIF 375

[Close]

BLAST of CaUC09G169600 vs. ExPASy TrEMBL
Match: A0A7G7YER8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oxalis corniculata OX=212256 GN=ndhD PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL 69
           ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Sbjct: 317 ILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIKI 371

[Close]

BLAST of CaUC09G169600 vs. ExPASy TrEMBL
Match: D3WEQ7 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oxalis latifolia OX=245239 GN=ndhD PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL 69
           ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Sbjct: 317 ILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIKI 371

[Close]

BLAST of CaUC09G169600 vs. ExPASy TrEMBL
Match: A0A7D5YJV3 (NADH dehydrogenase subunit 4 OS=Schefflera digitata OX=50324 GN=ndhD PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           L+GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 307 LIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 354

[Close]

BLAST of CaUC09G169600 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-16
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 14  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI 62
           ++GI SI+D GLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Sbjct: 323 IIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEM 370

The following BLAST results are available for this feature:

BLAST of CaUC09G169600 vs. NCBI nr


Match Name	E-value	Identity	Description
AES68444.1	5.5e-15	67.19	NADH-ubiquinone/plastoquinone (complex I) protein [Medicago truncatula]	[more]
YP_009473667.1	9.5e-15	77.97	NdhD [Impatiens piufanensis] >AVI69923.1 NdhD [Impatiens piufanensis]	[more]
QLI53753.1	1.2e-14	91.67	NADH dehydrogenase subunit 4 [Schefflera digitata]	[more]
YP_009669617.1	1.2e-14	80.00	NADH dehydrogenase subunit D [Oxalis drummondii] >ADD29827.1 NADH-plastoquinone ...	[more]
YP_009973537.1	1.2e-14	80.00	NADH-plastoquinone oxidoreductase subunit 4 [Oxalis corniculata] >QNH92988.1 NAD...	[more]

BLAST of CaUC09G169600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL8	2.8e-17	89.58	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659...	[more]
Q7YJT3	3.6e-17	89.58	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Calycanthus floridus va...	[more]
Q68RV6	3.6e-17	89.58	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng OX=4054 G...	[more]
Q0G9R2	4.7e-17	87.50	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Daucus carota OX=4039 G...	[more]
Q49KU8	6.2e-17	87.50	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Eucalyptus globulus sub...	[more]

BLAST of CaUC09G169600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G7IVM5	2.7e-15	67.19	NADH-ubiquinone/plastoquinone (Complex I) protein OS=Medicago truncatula OX=3880...	[more]
A0A2P1BYE3	4.6e-15	77.97	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Impatiens piufanensis O...	[more]
A0A7G7YER8	6.0e-15	80.00	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oxalis corniculata OX=2...	[more]
D3WEQ7	6.0e-15	80.00	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Oxalis latifolia OX=245...	[more]
A0A7D5YJV3	6.0e-15	91.67	NADH dehydrogenase subunit 4 OS=Schefflera digitata OX=50324 GN=ndhD PE=3 SV=1	[more]

BLAST of CaUC09G169600 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01050.1	1.1e-16	83.33	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43507:SF1	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4	coord: 14..61
IPR003918	NADH:ubiquinone oxidoreductase	PANTHER	PTHR43507	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4	coord: 14..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G169600.1	CaUC09G169600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0015990	electron transport coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048039	ubiquinone binding