CaUC09G168520 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G168520
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	60S ribosomal protein L3
Location	Ciama_Chr09: 11320609 .. 11324734 (+)
RNA-Seq Expression	CaUC09G168520
Synteny	CaUC09G168520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCAGAAGTAGGGGTCTCGTCGCGAGTTTGGACGAGCGGCTCTAGAGTTAGATCCATATTGATGGAAGAAGGAAGCACATCGAATTCCATGTTAATCGAAATTCAGACGGGCGCTCTATGCTGGTGAGTGACCACTCGCCACTTTGCATATGCATGGGTGTCAAAGAGGAAAGTGTTCAGAATGTACTATAGGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGTCCCTGCGGCCTAAGTGAGTTGCCCCGTGGCACACGAGTGTGTCATGGTGTGGGCGAGCGTTACAAGACGAGAGTCTTGGGCGTCTTCCATCAGGAATGGGATCTTGAGAACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCTCCTTCCCATAGGCTGGATGTTCGATATAGTACCCGGCATGTCGTTTTGGCTCGACATTGACTTAGCATGGACACGGGAGGGTTCATGCCTAGATATGTCCGGATGGATGGATGTCTGGGACGTCTCAAGTGGGAAAATACCCATGGAGTGATTATGATGGTTCTCGATAAGCCGACCCGAGCAGAAGAGAGAAAGTTGATGTTGTCCCGACACTCTGGATGACATTCAGAAGCATCTGTAGGACCTGATAGTCCCCGTTAACACGGTATTTGCCCAAGTTGTCCCGATAAGCAGTATGATGTCCCGGAAAGCCCCGGTAGATTGTTATAAGCCTATTTGGCCCAATGAAGGGTTCAAACTCATCCCGGCAAGGTTCCGAAGCGATGTAGAATTACGGGGGTCGTGTTGTTGAGAATCACGATGACAAAAGAAGTCGTGAAAGAGGGAAGTCGCACGTATAGGCGACGTGTAGGCCGAATGAAGTCAGTTTCGCATGAGTTCAGTTCGGTTGAGGACGAAAGAACCTCGCTTAAGGTCCGACGAAGCCTCAAACAAAATGGGCAAAAAGTAGATAGGGACTTGTGTTCCCCTTAAGGCTGACCATGATCAAGCATGAATCATGGTGCCGCACGGTTGAAGAAGCATGACCGTGACACTTGGCATCCTGCTAGAGTGTCGTTTACTGTTGCCAGGGTTGGTCAGAACGGATACCACCACCGAACTGAAATGAACAAAAAAATCTACAAAATTAGAAAGACAAGACAGGAGACGCATTCTGCCATCACTAGATTCCACCGGACCAAGAAGGACATTACTCCAATGGGTGGTTTCCCTCACTACGGTATTGTGAAGAGTGACTACTTGATGATTAAGGGAGGTTGTGTTGGACCCAAGAAGCGGGTCATGGTCTTTTGTCAGTCTTTTCTCAAATAAATTTCCCACGTGGCTCTCAAGGAGATCAAAATTAAGTTCACTGATACATCCTCTAAGCTCAACCATGGACGCTTCTAGATGACACAGGATAAACATAAGTTCTATGGTCGTGTCAAGGCTTAGCTTTAGTTGCCTTCCTTAATCCATCGTTGTTCTGGTTCCTATTAACAATGAATTTTTGTTATTTATTTCTATTGTTTTGAGGATTTTGAGTAGTTGAGGTGTTTTTGTTATCAAACTTAAATTTTGAATTTATCACTTGCTATTAATGAGACTTGATTTCACCTTCTAAAAAAAGAGCTAGGAAGACAAGAGCTCACAAAAAGAGCACGACAAAAAGAAACAAAGAACCCAGGCTACCCAGCAAAAAAAGCAGAGGGCAAGAGGGAACTCAAAAGAACTACAGTAACAAAATCAAAACAAGATCATAGTTACAAACGAGCCTATTAGTTGACACCCACGGCAAAACACTAAACCTAGCCCCACCATACTTTCTCCCTTGATCTCTCCACCTCCCTAAAAATCTTGTTATTCCACTCAATCTAGATGTTCCAAAAAAAAAAAAAAAAAAAACCATGCAAATTTAATCCTTTCTCACAAAAAGGCAACCTCAAGAGCACTTCAACAATCATTGAGAACCAAATTGTCCTCCTGGAATGTTATTTCTTCTCCAATTAAAATTATGCTAAATCATCAGTTAACCCAATAGTTTAAGGTACTAGGTGAAGGTAAATTAATATTATATGAACACTTTCAACACTCCTCACATATGGGCTTGGAAATTTGTTGAGAAGACCCAACAAGTGGAAATCAATAATGATTAGAGGAGGAAATGGCATTACAGGGTTTTGAACACATGACATTTTGCTCTGATAACATGTTAAATCACCAATTGACCCAAAAGTTTAAGCTAATAGGTGAAAGTAAATTTAATATTATATCAATACTTTAACAAAAATAATGGTGCTAAATTTCCATGGTGTTAACCCTACCATGCAAAACCTAACATAAAAAAACAATAAATAACCTTCTTTGAATTTTACTTTTCAAGTTTGCGGTAATAACATAAGTAACTTGTGCTAGAGAAGGGTCAACAATATGTGTAAAAAGATCGAGTTGAGAAGCCTTTCAAAGGATCAGGAGACTGAAATTTGAAGTCCATCCTACCCAGAAACACATGTGATCTTGCAAAAGGGAGAGAAGCCACCACTCCACATCAGCCACCTCTACATCGAAAAGGAGACGACCAAAGCCAAAGGAGATCAAAGAAGAAGGATATGAAGGAAAAGGCAGAATCGATGCCACCGAATGTAACTTCATTTAAGAGAGGTGATATGAATGAGGAAATGACTAAAAAAAAAAAAGATGTCACCAAACCAACAATCTTCCCAAAAATAGACTTTTGAGCCTTCCCCCACAAAGCATTTTATAAATTGAGAAACTGAGAGAATAAGGGAAAATCAAACGTGATACCTTTCCAAAGGTTCTTTCCAGGACCCTAAGAACCGTTGCTTTTCAACTACCTAAAAAGAATGGATGATATCTACTCACAATAATTTTGTACCACAGAGCACCATGCTCCATGAAGAACCTCCCCAACCATTTAGGCAACAACCCCTCCTTGCGTAATCTTAGGCTCCTAATCCCTAATCCTCCTAGTTCCATGGGTTTCACTGCCAACCCCAATTAACCAAGTGAGACCCTCATCGCTCGTCGATTCTATCCCACATGAAGTTTCTCATAGCTCGATAGGCTTACTCACACCAAAATTTAAGAGAATGACAAGATGGAGCTAGGGATAGCACTCAAGACAGATTGGATGAGAGTAAGTCTTCTTTCTTTTGAGAAAAATGCATGCTTTTACAAGACTCCTGCAATCAAATCTCAATAGGGCAACAAAATGGTATAGCAAAAATCTAACATATTCAGACAAATCGTAGTCAAAGAAACCCATAATATAATCAATGAAGAAATGGATAATCAGGATTAATGGTCTACATCCCATTTGCTTGGCCGCAATCCCAATGGTACACACAGTAAAACATGTAGAGATAAAGTATCACTCCATCCAATAACTAGCTATTGATAAACCTCCCAATATTCAGTTTCCTCCGTTCAGAAAACCAGCTAGCTGATGAGTTCACCAAAACTTTGGCCACACGTCAATAAATTCAATACTTGAGTTCTAACCGAGCTCTGTTATTGTACGGTGTAACCAATTTTCTCATATTATTAGTTTGTTCCTATCACAGCAACAACTGATACTCACATGGGTTTTCCTTCACTATTTGTCCACTTGTTGTTTCCACGAAATATCATGATCCATAAAATCCTATTCTCCCAACTCCCTCCCCACAACGCTCACGCACAAATTAGCTGTTACTTAGCTTCTAAAATCAGTAAGAACTCAAAACTTCCACATAAATGAATTGAATATAATTTCAAGCTGACTTTCTTATCAGCCAGCTGAATAAAATTCAATAACAGATAACCGAAAAATAAATCCAATATCTGTACCTGCTGAGACGATTGAACAGACAGAGGATGAATTTCTGCATGATCCCGCTGAAGCAGAAACAGCTTTGCTTCGGCACTGTAGTCCCGAGGTCTGAACTCCATTCAAGACTTGAGATTCCGCTCCCCTCGCGATAGATTGTGCATTCGATCCAAAGTTGCACTGGGTGGAAATTGGAGTTTTTCTTTAATTATTTCTTTTAATGGTCGACCCAAATTTGATTGGGTTGTGAGAGTATCATTCAGTTTAACTTCCCGAAGCCGCCCATTCGCGATGGCTCGTCTCAAGGTACATCGTGA

mRNA sequence

ATGACCTCAGAAGTAGGGGTCTCGTCGCGAGTTTGGACGAGCGGCTCTAGAGAATGGGATCTTGAGAACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCTCCTTCCCATAGGCTGGATGTTCGATATAGTACCCGGCATGTCGTTTTGGCTCGACATTGACTTAGCATGGACACGGGAGGGTTCATGCCTAGATATGTCCGGATGGATGGATGTCTGGGACGTCTCAATCCCCGTTAACACGGTATTTGCCCAAGTTGTCCCGATAAGCAGTATGATGTCCCGGAAAGCCCCGGTAGATTGTTATAAGCCTATTTGGCCCAATGAAGGGTTCAAACTCATCCCGGCAAGGCGACGTGTAGGCCGAATGAAGTCAGTTTCGCATGAGTTCAGTTCGGTTGAGGACGAAAGAACCTCGCTTAAGAAGCATGACCGTGACACTTGGCATCCTGCTAGAGTGTCGTTTACTGTTGCCAGGGTTGGTCAGAACGGATACCACCACCGAACTGAAATGAACAAAAAAATCTACAAAATTAGAAAGACAAGACAGGAGACGCATTCTGCCATCACTAGATTCCACCGGACCAAGAAGGACATTACTCCAATGGGTGGTTTCCCTCACTACGGTATTGTGAAGAGTGACTACTTGATGATTAAGGGAGATAACCGAAAAATAAATCCAATATCTGTACCTGCTGAGACGATTGAACAGACAGAGGATGAATTTCTGCATGATCCCGCTGAAGCAGAAACAGCTTTGCTTCGGCACTGTAGTCCCGAGTTTAACTTCCCGAAGCCGCCCATTCGCGATGGCTCGTCTCAAGGTACATCGTGA

Coding sequence (CDS)

ATGACCTCAGAAGTAGGGGTCTCGTCGCGAGTTTGGACGAGCGGCTCTAGAGAATGGGATCTTGAGAACAGTGTCGGACGGCACGGGTGTGCCGGCATTGCGCTCCTTCCCATAGGCTGGATGTTCGATATAGTACCCGGCATGTCGTTTTGGCTCGACATTGACTTAGCATGGACACGGGAGGGTTCATGCCTAGATATGTCCGGATGGATGGATGTCTGGGACGTCTCAATCCCCGTTAACACGGTATTTGCCCAAGTTGTCCCGATAAGCAGTATGATGTCCCGGAAAGCCCCGGTAGATTGTTATAAGCCTATTTGGCCCAATGAAGGGTTCAAACTCATCCCGGCAAGGCGACGTGTAGGCCGAATGAAGTCAGTTTCGCATGAGTTCAGTTCGGTTGAGGACGAAAGAACCTCGCTTAAGAAGCATGACCGTGACACTTGGCATCCTGCTAGAGTGTCGTTTACTGTTGCCAGGGTTGGTCAGAACGGATACCACCACCGAACTGAAATGAACAAAAAAATCTACAAAATTAGAAAGACAAGACAGGAGACGCATTCTGCCATCACTAGATTCCACCGGACCAAGAAGGACATTACTCCAATGGGTGGTTTCCCTCACTACGGTATTGTGAAGAGTGACTACTTGATGATTAAGGGAGATAACCGAAAAATAAATCCAATATCTGTACCTGCTGAGACGATTGAACAGACAGAGGATGAATTTCTGCATGATCCCGCTGAAGCAGAAACAGCTTTGCTTCGGCACTGTAGTCCCGAGTTTAACTTCCCGAAGCCGCCCATTCGCGATGGCTCGTCTCAAGGTACATCGTGA

Protein sequence

MTSEVGVSSRVWTSGSREWDLENSVGRHGCAGIALLPIGWMFDIVPGMSFWLDIDLAWTREGSCLDMSGWMDVWDVSIPVNTVFAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKKHDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPMGGFPHYGIVKSDYLMIKGDNRKINPISVPAETIEQTEDEFLHDPAEAETALLRHCSPEFNFPKPPIRDGSSQGTS

Homology

[Close]

BLAST of CaUC09G168520 vs. NCBI nr
Match: XP_008463090.1 (PREDICTED: 60S ribosomal protein L3 [Cucumis melo] >KAA0035026.1 60S ribosomal protein L3 [Cucumis melo var. makuwa] >TYK02359.1 60S ribosomal protein L3 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-30
Identity = 76/138 (55.07%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKKIYKI KT QE+H+AIT F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKTGQESHTAITEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 322 GGFPHYGIVKSDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. NCBI nr
Match: XP_011656458.1 (60S ribosomal protein L3 [Cucumis sativus] >KGN45859.1 hypothetical protein Csa_005287 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-30
Identity = 75/138 (54.35%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKK+YKI KT QE+H+AIT F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKTGQESHTAITEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 322 GGFPHYGIVKSDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. NCBI nr
Match: BAA83471.1 (Csf-3 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-30
Identity = 75/138 (54.35%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 32  FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 91

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKK+YKI KT QE+H+AIT F RT+KDITPM
Sbjct: 92  ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKTGQESHTAITEFDRTEKDITPM 151

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 152 GGFPHYGIVKSDYLMIKG 160

[Close]

BLAST of CaUC09G168520 vs. NCBI nr
Match: XP_038885416.1 (60S ribosomal protein L3 [Benincasa hispida])

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-30
Identity = 76/138 (55.07%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKKIYKI KT QE+HSAIT F RT+KDITP+
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKTGQESHSAITEFDRTEKDITPI 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 322 GGFPHYGIVKSDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. NCBI nr
Match: XP_022898145.1 (60S ribosomal protein L3-2-like [Olea europaea var. sylvestris])

HSP 1 Score: 142.9 bits (359), Expect = 4.2e-30
Identity = 73/140 (52.14%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 82  TVFAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSL 141
           ++F + +P+ ++  +   +D    +   +G++ + +R  V R+   +H        R   
Sbjct: 200 SLFEKQIPVDAVFQKDEMIDII-GVTKGKGYEGVVSRWGVTRLPRKTH--------RGLR 259

Query: 142 KKHDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDIT 201
           K      WHPARVSFTVAR GQNGYHHRTEMNKKIYK+ KT QE+HSA+T F RT+KDIT
Sbjct: 260 KVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKTAQESHSAMTEFDRTEKDIT 319

Query: 202 PMGGFPHYGIVKSDYLMIKG 222
           PMGGFPHYGIVK DYLMIKG
Sbjct: 320 PMGGFPHYGIVKDDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy Swiss-Prot
Match: P22738 (60S ribosomal protein L3-2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=2 SV=4)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-31
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 82  TVFAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSL 141
           ++F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   
Sbjct: 200 SLFEKQVPVDAIFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLR 259

Query: 142 KKHDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDIT 201
           K      WHPARVS+TVAR GQNGYHHRTEMNKK+Y++ K  QETHSA+T + RT+KDIT
Sbjct: 260 KVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDIT 319

Query: 202 PMGGFPHYGIVKSDYLMIKG 222
           PMGGFPHYGIVK DYLMIKG
Sbjct: 320 PMGGFPHYGIVKEDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy Swiss-Prot
Match: P35684 (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL3 PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 3.9e-31
Identity = 69/138 (50.00%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + +P+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKEIPVDAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVS+TVAR GQNGYHHRTEMNKK+YKI K+ QE+H+A T F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYG+VK DYLMIKG
Sbjct: 322 GGFPHYGVVKGDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy Swiss-Prot
Match: P17094 (60S ribosomal protein L3-1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=1 SV=5)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + +PI ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQIPIEAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVS+TVAR GQNGYHHRTE+NKKIY++ K   E H+A+T + RT+KD+TPM
Sbjct: 262 ACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVK DYLMIKG
Sbjct: 322 GGFPHYGIVKDDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy Swiss-Prot
Match: P49149 (60S ribosomal protein L3 OS=Toxocara canis OX=6265 GN=RPL3 PE=2 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 88  VPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKKHDRD 147
           VP+ S+ ++   +DC   +   +GFK + +R    ++   +H        +   K     
Sbjct: 205 VPVDSVFAQDEMIDCI-GVTKGKGFKGVTSRWHTKKLPRKTH--------KGLRKVACIG 264

Query: 148 TWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRK---TRQETHSAITRFHRTKKDITPMG 207
            WHP+RV FTVAR GQ GYHHRTE+NKKIY++ K   T +   +  T +  T+K + PMG
Sbjct: 265 AWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMG 324

Query: 208 GFPHYGIVKSDYLMIKG--DNRKINPISVPAETIEQTEDEFLHD 247
           GFPHYG+V  D++MI+G     K  PI++    I QT+  F H+
Sbjct: 325 GFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTK-RFAHE 358

[Close]

BLAST of CaUC09G168520 vs. ExPASy Swiss-Prot
Match: Q759R7 (60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPL3 PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-20
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 149 WHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPMGGFPH 208
           WHPA V +TVAR GQNGYHHRT +N K+Y+I K   E ++A T F RTKK ITPMGGF H
Sbjct: 255 WHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVH 314

Query: 209 YGIVKSDYLMIKG 222
           YG V +D++M+KG
Sbjct: 315 YGAVNNDFVMVKG 326

[Close]

BLAST of CaUC09G168520 vs. ExPASy TrEMBL
Match: A0A5A7SYQ0 (60S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00600 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.1e-31
Identity = 76/138 (55.07%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKKIYKI KT QE+H+AIT F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKTGQESHTAITEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 322 GGFPHYGIVKSDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy TrEMBL
Match: A0A1S3CIE8 (60S ribosomal protein L3 OS=Cucumis melo OX=3656 GN=LOC103501323 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.1e-31
Identity = 76/138 (55.07%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKKIYKI KT QE+H+AIT F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKTGQESHTAITEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 322 GGFPHYGIVKSDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy TrEMBL
Match: Q9SXL7 (Csf-3 protein OS=Cucumis sativus OX=3659 GN=Csf-3 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 75/138 (54.35%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 32  FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 91

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKK+YKI KT QE+H+AIT F RT+KDITPM
Sbjct: 92  ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKTGQESHTAITEFDRTEKDITPM 151

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 152 GGFPHYGIVKSDYLMIKG 160

[Close]

BLAST of CaUC09G168520 vs. ExPASy TrEMBL
Match: A0A0A0KAJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014790 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 75/138 (54.35%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVEAVFQKDEMIDLI-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKK+YKI KT QE+H+AIT F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKTGQESHTAITEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVKSDYLMIKG
Sbjct: 322 GGFPHYGIVKSDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. ExPASy TrEMBL
Match: A0A059BZL9 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F04208 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 74/138 (53.62%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQVPVDAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVSFTVAR GQNGYHHRTEMNKK+YKI KT QE+H+AIT F RT+KDITPM
Sbjct: 262 ACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKTSQESHTAITEFDRTEKDITPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVK DYLMIKG
Sbjct: 322 GGFPHYGIVKDDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. TAIR 10
Match: AT1G61580.1 (R-protein L3 B )

HSP 1 Score: 138.7 bits (348), Expect = 7.3e-33
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 82  TVFAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSL 141
           ++F + VP+ ++  +   +D    +   +G++ +  R  V R+   +H        R   
Sbjct: 200 SLFEKQVPVDAIFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLR 259

Query: 142 KKHDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDIT 201
           K      WHPARVS+TVAR GQNGYHHRTEMNKK+Y++ K  QETHSA+T + RT+KDIT
Sbjct: 260 KVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDIT 319

Query: 202 PMGGFPHYGIVKSDYLMIKG 222
           PMGGFPHYGIVK DYLMIKG
Sbjct: 320 PMGGFPHYGIVKEDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. TAIR 10
Match: AT1G43170.1 (ribosomal protein 1 )

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-30
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + +PI ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQIPIEAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVS+TVAR GQNGYHHRTE+NKKIY++ K   E H+A+T + RT+KD+TPM
Sbjct: 262 ACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVK DYLMIKG
Sbjct: 322 GGFPHYGIVKDDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. TAIR 10
Match: AT1G43170.2 (ribosomal protein 1 )

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-30
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + +PI ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQIPIEAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVS+TVAR GQNGYHHRTE+NKKIY++ K   E H+A+T + RT+KD+TPM
Sbjct: 262 ACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVK DYLMIKG
Sbjct: 322 GGFPHYGIVKDDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. TAIR 10
Match: AT1G43170.3 (ribosomal protein 1 )

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-30
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + +PI ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 202 FEKQIPIEAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 261

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVS+TVAR GQNGYHHRTE+NKKIY++ K   E H+A+T + RT+KD+TPM
Sbjct: 262 ACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPM 321

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVK DYLMIKG
Sbjct: 322 GGFPHYGIVKDDYLMIKG 330

[Close]

BLAST of CaUC09G168520 vs. TAIR 10
Match: AT1G43170.4 (ribosomal protein 1 )

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-30
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 84  FAQVVPISSMMSRKAPVDCYKPIWPNEGFKLIPARRRVGRMKSVSHEFSSVEDERTSLKK 143
           F + +PI ++  +   +D    +   +G++ +  R  V R+   +H        R   K 
Sbjct: 119 FEKQIPIEAVFQKDEMIDII-GVTKGKGYEGVVTRWGVTRLPRKTH--------RGLRKV 178

Query: 144 HDRDTWHPARVSFTVARVGQNGYHHRTEMNKKIYKIRKTRQETHSAITRFHRTKKDITPM 203
                WHPARVS+TVAR GQNGYHHRTE+NKKIY++ K   E H+A+T + RT+KD+TPM
Sbjct: 179 ACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPM 238

Query: 204 GGFPHYGIVKSDYLMIKG 222
           GGFPHYGIVK DYLMIKG
Sbjct: 239 GGFPHYGIVKDDYLMIKG 247

The following BLAST results are available for this feature:

BLAST of CaUC09G168520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463090.1	1.9e-30	55.07	PREDICTED: 60S ribosomal protein L3 [Cucumis melo] >KAA0035026.1 60S ribosomal p...	[more]
XP_011656458.1	2.4e-30	54.35	60S ribosomal protein L3 [Cucumis sativus] >KGN45859.1 hypothetical protein Csa_...	[more]
BAA83471.1	2.4e-30	54.35	Csf-3 [Cucumis sativus]	[more]
XP_038885416.1	2.4e-30	55.07	60S ribosomal protein L3 [Benincasa hispida]	[more]
XP_022898145.1	4.2e-30	52.14	60S ribosomal protein L3-2-like [Olea europaea var. sylvestris]	[more]

BLAST of CaUC09G168520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22738	1.0e-31	50.00	60S ribosomal protein L3-2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=2 SV=4	[more]
P35684	3.9e-31	50.00	60S ribosomal protein L3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL3 PE=2 S...	[more]
P17094	2.1e-29	47.83	60S ribosomal protein L3-1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=1 SV=5	[more]
P49149	1.9e-22	37.80	60S ribosomal protein L3 OS=Toxocara canis OX=6265 GN=RPL3 PE=2 SV=2	[more]
Q759R7	3.1e-20	63.01	60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FG...	[more]

BLAST of CaUC09G168520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYQ0	9.1e-31	55.07	60S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CIE8	9.1e-31	55.07	60S ribosomal protein L3 OS=Cucumis melo OX=3656 GN=LOC103501323 PE=3 SV=1	[more]
Q9SXL7	1.2e-30	54.35	Csf-3 protein OS=Cucumis sativus OX=3659 GN=Csf-3 PE=2 SV=1	[more]
A0A0A0KAJ9	1.2e-30	54.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014790 PE=3 SV=1	[more]
A0A059BZL9	2.6e-30	53.62	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F04208 PE=3 SV...	[more]

BLAST of CaUC09G168520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61580.1	7.3e-33	50.00	R-protein L3 B	[more]
AT1G43170.1	1.5e-30	47.83	ribosomal protein 1	[more]
AT1G43170.2	1.5e-30	47.83	ribosomal protein 1	[more]
AT1G43170.3	1.5e-30	47.83	ribosomal protein 1	[more]
AT1G43170.4	1.5e-30	47.83	ribosomal protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 148..221 e-value: 1.3E-30 score: 106.6
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 133..225 e-value: 6.8E-26 score: 92.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..278
None	No IPR available	PANTHER	PTHR11363:SF14	60S RIBOSOMAL PROTEIN L3-2	coord: 147..221
IPR045077	Ribosomal protein L3, archaeal/eukaryotic type	PANTHER	PTHR11363	60S RIBOSOMAL PROTEIN L3-RELATED	coord: 147..221
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 148..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G168520.1	CaUC09G168520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome