CaUC09G162160 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G162160
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	60S ribosomal protein L44
Location	Ciama_Chr09: 4157320 .. 4158711 (+)
RNA-Seq Expression	CaUC09G162160
Synteny	CaUC09G162160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATCTTCCTTCCATTGTTCTTTGCTGTTTGTCTGGATTTTCTCCCTGTTAATGCTTCTATGCTGTGTTTGGTGATGAGAATTTAACTATTAAGTTGGAAAACTAAAGCATGTTCTTCGTCCTTTAATCTTATTCCATTTGATTCCGAACGCTGGAAGGTAAACCCTCGTAAAATTCTTTTTGATGTGCGCTAAAATTCTCGGTTTTACGGAGCCTAGTAGATAAGCGAATGTGTTGCGAATACATTTGTAATCTAGGATATTGGATTGATGAGTTTCGGAATTTTTTATTTGCATTTACGATGGGCTGCCCTTTTAGAAGTCTATTCTGTTCTAAGCAATGTAATTATTTGGGTTTTTTTCCTCTTTTAGTTTGTTGATTTTTGGGAAGTGTTAATGCAGTAGATCTGGTTTTAATATACTCGAATAGAAAAACAAATTGGTAAGTTGACACGAGAGAGATTTGAAATGCCATTGTAAACTGACTTTGAAATTCACTCGAATGTTTTCCTCTGCAAGTGTGGGGGCTATTTATGTATATATATTTGTGTAGAGTTCTATTGTATGATCGTAAAATTATAGTTTTGATTCGAATGATATTAAATTCTTCTGTTAAATAGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCTGTCTTTCATAAGAAGGTGAAAATCTCTTCCATGATCTGTTCAACCCAAAACCGGATTTTGTTTTTTCTCATTGAATAAGTAATCATGAGAGCTTTGAACTTTCCTGCCAGGCCAAAACTACAAAAAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCACCCCATTAAGGTTTGTATTCCAAAAGAAGTTATCGTTCATTAGTGTTTCTATGCTGATATAAACTATATGGATGGGCAGAACGCTTATTTTAGTTATCCTTCAAATTTTTAATGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGGATTAACATTGTCCTTCACTATATATTGCTGTTTAGGGAGTCAGAATTGTGGGGTTTTTCTGCCCTTTGCTTTTTGTTTGGTGTTTCTGATATTTGGGAACATTTTTACCTGTTGAATTTTGTTTAATGTATCAGTTTATAATGGAACAACTAGCTTATCCTCTACCAAATTTCTGTTTATCACTTTGTTTGATATCCACTCTTCATTCTTCGCCGATATGATGCCGAATTGTTTTTTACTTGTTACCA

mRNA sequence

ATGGTAATCTTCCTTCCATTGTTCTTTGCTGTTTGTCTGGATTTTCTCCCTGTTAATGCTTCTATGCTGTGTTTGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCTGTCTTTCATAAGAAGGCCAAAACTACAAAAAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCACCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGGATTAACATTGTCCTTCACTATATATTGCTGTTTAGGGAGTCAGAATTGTGGGGTTTTTCTGCCCTTTGCTTTTTGTTTGGTGTTTCTGATATTTGGGAACATTTTTACCTGTTGAATTTTGTTTAATGTATCAGTTTATAATGGAACAACTAGCTTATCCTCTACCAAATTTCTGTTTATCACTTTGTTTGATATCCACTCTTCATTCTTCGCCGATATGATGCCGAATTGTTTTTTACTTGTTACCA

Coding sequence (CDS)

ATGGTAATCTTCCTTCCATTGTTCTTTGCTGTTTGTCTGGATTTTCTCCCTGTTAATGCTTCTATGCTGTGTTTGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCTGTCTTTCATAAGAAGGCCAAAACTACAAAAAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCACCCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG

Protein sequence

MVIFLPLFFAVCLDFLPVNASMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF

Homology

[Close]

BLAST of CaUC09G162160 vs. NCBI nr
Match: MBA0842590.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 116 SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 175

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 176 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 224

[Close]

BLAST of CaUC09G162160 vs. NCBI nr
Match: MBA0750941.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 544 SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 603

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 604 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 652

[Close]

BLAST of CaUC09G162160 vs. NCBI nr
Match: XP_012460311.1 (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii] >KJB76839.1 hypothetical protein B456_012G133600 [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 64  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 123

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 124 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 172

[Close]

BLAST of CaUC09G162160 vs. NCBI nr
Match: TYI87946.1 (hypothetical protein E1A91_D04G172500v1, partial [Gossypium mustelinum])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 45  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 104

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 105 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 153

[Close]

BLAST of CaUC09G162160 vs. NCBI nr
Match: KAA3463638.1 (60S ribosomal protein L44-like [Gossypium australe])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 55  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 114

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 115 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 163

[Close]

BLAST of CaUC09G162160 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 218.0 bits (554), Expect = 6.2e-56
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CaUC09G162160 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-52
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CaUC09G162160 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-42
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 129
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of CaUC09G162160 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-42
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 129
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of CaUC09G162160 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-42
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 129
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of CaUC09G162160 vs. ExPASy TrEMBL
Match: A0A5D2QY53 (Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A04G143500v1 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 45  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 104

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 105 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 153

[Close]

BLAST of CaUC09G162160 vs. ExPASy TrEMBL
Match: A0A7J9CRB6 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_002317 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 544 SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 603

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 604 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 652

[Close]

BLAST of CaUC09G162160 vs. ExPASy TrEMBL
Match: A0A7J9K7Z2 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_002409 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 116 SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 175

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 176 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 224

[Close]

BLAST of CaUC09G162160 vs. ExPASy TrEMBL
Match: A0A0D2V4Y2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G133600 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 64  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 123

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 124 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 172

[Close]

BLAST of CaUC09G162160 vs. ExPASy TrEMBL
Match: A0A5B6V3B1 (60S ribosomal protein L44-like OS=Gossypium australe OX=47621 GN=rpl-41 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 21  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 80
           S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 55  SAVAMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 114

Query: 81  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 115 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 163

[Close]

BLAST of CaUC09G162160 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-53
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CaUC09G162160 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-53
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 130
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CaUC09G162160 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 181.4 bits (459), Expect = 4.6e-46
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 25  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 84
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 85  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 118
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of CaUC09G162160 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0842590.1	2.1e-53	96.33	hypothetical protein [Gossypium armourianum]	[more]
MBA0750941.1	2.1e-53	96.33	hypothetical protein [Gossypium gossypioides]	[more]
XP_012460311.1	2.1e-53	96.33	PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii] >KJB76839.1 hypo...	[more]
TYI87946.1	2.1e-53	96.33	hypothetical protein E1A91_D04G172500v1, partial [Gossypium mustelinum]	[more]
KAA3463638.1	2.1e-53	96.33	60S ribosomal protein L44-like [Gossypium australe]	[more]

BLAST of CaUC09G162160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	6.2e-56	99.05	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	2.4e-52	92.38	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	1.3e-42	76.92	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	2.3e-42	76.92	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	2.3e-42	76.92	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of CaUC09G162160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2QY53	1.0e-53	96.33	Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A04...	[more]
A0A7J9CRB6	1.0e-53	96.33	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_002317 PE=3 ...	[more]
A0A7J9K7Z2	1.0e-53	96.33	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_002409 PE=3 S...	[more]
A0A0D2V4Y2	1.0e-53	96.33	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G133600 PE=3 ...	[more]
A0A5B6V3B1	1.0e-53	96.33	60S ribosomal protein L44-like OS=Gossypium australe OX=47621 GN=rpl-41 PE=3 SV=...	[more]

BLAST of CaUC09G162160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	1.7e-53	92.38	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	1.7e-53	92.38	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	4.6e-46	91.40	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.80		coord: 25..129 e-value: 6.1E-51 score: 173.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..80
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 16..129
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 43..117 e-value: 1.4E-34 score: 118.4
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 16..129
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 87..98
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 26..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G162160.1	CaUC09G162160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0003735	structural constituent of ribosome