CaUC09G161750 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G161750
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	MATE1
Location	Ciama_Chr09: 3845277 .. 3847974 (+)
RNA-Seq Expression	CaUC09G161750
Synteny	CaUC09G161750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGTAAAACTTGCCAATGAATATGCAGAATACGCAAAATCAGCAGCTCCAAAATTCACTCCGTCGAAAACAAACGCCAGTGAGTTTAACGGCTGTGTAGCTGCAATGAACTGATGAATTTCCAGAGAAAGAGGCGAATCAGATGAGTTCATCAATGGCATTAGAAGGAAGAAAACGAGGTGCGTTTGTTATTTACCGGAAGTCCTAAATGTATGAGGTGCTGCACATTAATGTCTCTTGAAAATATTCCTGCTCCGAAGAACATTCCGATTCCGACGACAATAGCGAGTCCAATACCTAGAATAAAGCTCATCTGTCCAAGAAAATATTTTAGGTTTGTTAGAGGAATTTGGTTTTTGTTTTTCTGTGGTGAGGGAGGATGAAATATTTTAAACGATCTTGGTTTTATAATGTGGCTACGTGAAGTAATCAATCCGTTTTGATTTTAGATGATGCAGATTTTGTTGTGCAAGTGCATGGTGGTTGCTCAAGATCTCTGCAACCTTGATTCTGTATTATCTTTGAAGCAGTAAGAAAATTCTCTCCAATTTGTGAGTTTTTAATTCATCTCTTACCTGCAATACCCTGGTAGCTGTTGCCGTTGTCTTGTTGTAGTCTTTTTCTGCAAATGCACTGGCTAGAATCGCCTAAAAGAGCAAGAAAAATAATCATATACCATGAAAAGAGATAACCGTAAGACTTTCTTTTCCCCAAACATCTACAGATTGTCACTTAGAAAGAAGTTATGCAGTAGAGGTAGAATTAGGTTTTTGTTTCTCACCTGTCCAGCCACTGCTAAACCATCGGACAATAAAGAGGATGTCATCCACACTTGCAAGCAAGTTTGGAACGCAGCCATGGGTGTTGGGCCCAGCCTTGCAGCTAGTGATGCTGCTAGAGTCACACAGAAGGTCACTGCTACAACTCTTGCCAGCAATAGACCCCCTGCTCCCAGTCATTTAATATTCAATTAGAGATAAAGAACGATTGATCTCATAGTTTCCTTAGTATTGGAATATCGAATTAAGAATAGGTTGGGAACAATTTCTTTATACCATTTTTAAGAAATCGACCAAATTTCAAATCTTTAAGACTTGGAGGCATGAGATTGACTTTTTGCATCAGTCTCCAGAAGAGAATGATCACAATGAAATACCTGAAAGGATTGCAGTAAGTCTTAGAGAAGCTTTCTTGGAATGTCAAGACACAAGTTTTATGTCATTTTGGAGCAATGTTGTAAAGTTATAGCAATATGATAGTGCACAGAAATAAAAACTTACTGAGAAAGAACATGAGCAGCAGCTGCACCTTTGACCCCCCAACGGCACACAAAGATGAGAATGGGGTCCAGCATGATGTTTACAGTATATCCAGCAACTACATAAAGACATAAACAAATAGTTGTAGTCAAAGGAAGTTAATATATTAGGTTCTACCATAGAGGAAAAAGGACACAAAAGGCCTACCAATAACATAAAGAGGAGTCCTTGTATCCTTGAACCCTCTAAAGATCCCTTGCATGGCCAATGACAGAAGAACAGCAGGAGCACCAAGTGACCTTAATGTCAAGTACTTGTGAGCAGGGGCAAACATGGGTGAATTCTGTATGGTGAAGTCCCAAACTATTAGAGGAAGACATTTGATCTAAAACTGGACTACATCTTAAGTTATAGGGAGCACTCACATTTTTTACTCCCATTATATTCAGCAAAGATTTGGCTCCAAAAACAAGGAATATGGCTTGCATTAGGCCCAGAATTGTGCCAAATATCAGAGCTGTGGATGCTGATGCAATTTGCTTCTTCTCTTTCCTTTTGGACTTGGCAGAGGTAGACTTGAGTACATTTGCACTCAAATCTGGAAAAAGAAAGAAAAAAAAAGGAAAGGATATCAAAAACTATTAAAATCTCCTAAATATAACCATCAAATTTTGGTTTTACCTTTTCCTGGATCTTGAAGAGCACCATTATCTGGACTCAGTTCCTTTGTTCCCTTTTCCGTTGAAGAGGTTTCCTTGTTTTCTTCTTCTCCATCTTTTTCTATTGTGATTTTACTCGTTGACTCAACATTCAAGTTATTATGATCTTGTTTGGCTGCTAGTTTTTCATCGTTTTCATGATCTTCAGGCACATAAACTTTCACTGAATTATCATCAGCCAAGCACTTCTCTATGTCAACTTTTGCTTTGTTTTTGGCAGCATTGCCAATGGTATCTTCCTCAGCGACGAAAGAAGTCGTAATGCTTACAAGTGGGAATATGGTAATCCTTGAAGCTTGGTTGAATATAGCAATGGATACTCCAACTGCAGCAAGTTCCACAGGTCCAATATGGCCAACAAAAGCAGTGTCTATAAGAGAAGCTACAGGATCAGCTGCAACAGCTAGAGCAGCAGGCACTGCAATGCCCAGTATCTCCCGACCAATTGCATCGAACTTGAAAACACATCTACATGTATAACCATTTAAAACATTAGCAGACTTTGACACAAATTTCTTTGGCGGTTCAAAGATGGGAAAAGGGGCTGTATTATAAGTTATGATCGGAAAAATCATATTGTGGTTCTCAACTTTTAAATTCAACATCAAGTATTTAAAGAAAAGAATTGATTGGAACATGAAACACACCTTGCGTCTTTGAAGAAAACATTGACAGGCATCTTCAACTTGATTCCCCCTTCTGTGGTCAGACTAAG

mRNA sequence

ATGATTCTAATACGCAAAATCAGCAGCTCCAAAATTCACTCCGTCGAAAACAAACGCCAAGAAAGAGGCGAATCAGATGAGTTCATCAATGGCATTAGAAGGAAGAAAACGAGTAGAGGTAGAATTAGGTTTTTGTTTCTCACCTGTCCAGCCACTGCTAAACCATCGGACAATAAAGAGGATGTCATCCACACTTGCAAGCAAGTTTGGAACGCAGCCATGGGTGTTGGGCCCAGCCTTGCAGCTAGTGATGCTGCTAGAGTCACACAGAAGGTCACTGCTACAACTCTTGCCAGCAATAGACCCCCTGCTCCCACATTGCCAATGGTATCTTCCTCAGCGACGAAAGAAGTCGTAATGCTTACAAGTGGGAATATGGTAATCCTTGAAGCTTGGTTGAATATAGCAATGGATACTCCAACTGCAGCAAGTTCCACAGGTCCAATATGGCCAACAAAAGCAGTGTCTATAAGAGAAGCTACAGGATCAGCTGCAACAGCTAGAGCAGCAGGCACTGCAATGCCCAGTATCTCCCGACCAATTGCATCGAACTTGAAAACACATCTACATGTATAACCATTTAAAACATTAGCAGACTTTGACACAAATTTCTTTGGCGGTTCAAAGATGGGAAAAGGGGCTGTATTATAAGTTATGATCGGAAAAATCATATTGTGGTTCTCAACTTTTAAATTCAACATCAAGTATTTAAAGAAAAGAATTGATTGGAACATGAAACACACCTTGCGTCTTTGAAGAAAACATTGACAGGCATCTTCAACTTGATTCCCCCTTCTGTGGTCAGACTAAG

Coding sequence (CDS)

ATGATTCTAATACGCAAAATCAGCAGCTCCAAAATTCACTCCGTCGAAAACAAACGCCAAGAAAGAGGCGAATCAGATGAGTTCATCAATGGCATTAGAAGGAAGAAAACGAGTAGAGGTAGAATTAGGTTTTTGTTTCTCACCTGTCCAGCCACTGCTAAACCATCGGACAATAAAGAGGATGTCATCCACACTTGCAAGCAAGTTTGGAACGCAGCCATGGGTGTTGGGCCCAGCCTTGCAGCTAGTGATGCTGCTAGAGTCACACAGAAGGTCACTGCTACAACTCTTGCCAGCAATAGACCCCCTGCTCCCACATTGCCAATGGTATCTTCCTCAGCGACGAAAGAAGTCGTAATGCTTACAAGTGGGAATATGGTAATCCTTGAAGCTTGGTTGAATATAGCAATGGATACTCCAACTGCAGCAAGTTCCACAGGTCCAATATGGCCAACAAAAGCAGTGTCTATAAGAGAAGCTACAGGATCAGCTGCAACAGCTAGAGCAGCAGGCACTGCAATGCCCAGTATCTCCCGACCAATTGCATCGAACTTGAAAACACATCTACATGTATAA

Protein sequence

MILIRKISSSKIHSVENKRQERGESDEFINGIRRKKTSRGRIRFLFLTCPATAKPSDNKEDVIHTCKQVWNAAMGVGPSLAASDAARVTQKVTATTLASNRPPAPTLPMVSSSATKEVVMLTSGNMVILEAWLNIAMDTPTAASSTGPIWPTKAVSIREATGSAATARAAGTAMPSISRPIASNLKTHLHV

Homology

[Close]

BLAST of CaUC09G161750 vs. ExPASy TrEMBL
Match: J3LLF7 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-08
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 47  LTCPATAKPSDNKEDVIHTCKQVWNAAMGVGPSLAASDAARVTQKVTATTLASNRPP 104
           LTCPATA PS  ++    + +Q+W AAM VGP  AA+D A VTQKVTATTLAS+R P
Sbjct: 4   LTCPATASPSARRDVASQSWQQIWKAAMMVGPWRAANDDASVTQKVTATTLASSRNP 60

[Close]

BLAST of CaUC09G161750 vs. ExPASy TrEMBL
Match: A0A0A9GP85 (MATE1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 137 MDTPTAASSTGPIWPTKAVSIREATGSAATARAAGTAMPSISRPIASNLKTHL 190
           MD PTAASSTGP+WP KAVS  EATGSA  A A GTA+P IS P++S+L T+L
Sbjct: 1   MDIPTAASSTGPMWPMKAVSTSEATGSAMRASAPGTAIPMISWPMSSHLNTNL 53

The following BLAST results are available for this feature:

BLAST of CaUC09G161750 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC09G161750 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC09G161750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J3LLF7	7.4e-08	61.40	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]
A0A0A9GP85	1.3e-07	67.92	MATE1 OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CaUC09G161750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G161750.1	CaUC09G161750.1	mRNA