CaUC09G159470 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G159470
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	Ciama_Chr09: 1781857 .. 1783257 (+)
RNA-Seq Expression	CaUC09G159470
Synteny	CaUC09G159470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTATCTTTCACTGAACACTTTATTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTCCATCTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTTCATCTAGGTTCATATCGTTTATCATCTTCATCTTCCTTTCGCTCTTTCAACTACATTACAAATTCCTCCCACACCCTTAAACGTTTTCGCCCTCTTACTTTCCGTAGAGCCCAAATCAGAGCTGTTGGCACTGTTCCACAGAATCAATCTGAAACCACTGACCCTGAGGAGCCTCCGATTGTCGATTTGGCTTTCGTTAATGTAAGTTGTAATGTCGAATTTTAGGGGGGTTTTGTGGATTTTCGGAGTATGATTGTGTGTTTTTTTTCAGTCTGTGTTGCTTCCTGATGGAACCCCAGATGTGCATTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCCAATATTGAGTTGTATGGACCTTATGTGAGTTTCCCTGTTCATTAACTTGATAAAGAACTTGGGTTTTCAATTAGTTTTGATTATTATATGGTTTTGATGTTCTTTTACAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGGTGATTTTACTGCATTAGATCATGTTCTCAACAGGATTTAATCAATACCCTTTTCATTTCTACTTTCTGAATCTTTGTTTATTTGATCATTATGGTAAAATTATTCAGTTCATGACTCAGATAGACAGACATAGAAGTTAAAAGAGTTCAAAATTTGGTGCCATTGGAAAATGAAAGAAATGAAGAAGGAATTCAATGTCAACGTTCTGCTATAAGTCTTCTGAATGAAATTTTTACCATTTCAGATCATTGAAGGGATAGAGCTACTGAACCCTCGTACAGACATAGAGAAAGACAAACTTAAAAGGGTAAGAATACAGATGCCATTAGAAATCAAAATGAGTCAATGACTATGGACACTGCCATGTAAATGTTAAGTTCATATGTATTTTACATTCAATTTGTTTGAACATCATTTGTGGCTGAATAAAACAATAGCTCGAGGCAATGCGATGATAAAAGTATAATGAATCTTGTTGTCACATACAGAAACCCAAAAACTGGAGATTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGGTAATTAGTCGAAATTTGATTGATGATGTTGTTGAATAGAACAGTCTCAGATCAGTCTCCTCCTTTTCACAAAAAATTGATGAGTTTATTGTTTGTTTTCTTTGGATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATCAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTGCATAGTTTAACTCTTTT

mRNA sequence

ATGATTTATCTTTCACTGAACACTTTATTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTCCATCTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTTCATCTAGGTTCATATCGTTTATCATCTTCATCTTCCTTTCGCTCTTTCAACTACATTACAAATTCCTCCCACACCCTTAAACGTTTTCGCCCTCTTACTTTCCGTAGAGCCCAAATCAGAGCTGTTGGCACTGTTCCACAGAATCAATCTGAAACCACTGACCCTGAGGAGCCTCCGATTGTCGATTTGGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCAGATGTGCATTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCCAATATTGAGTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATCATTGAAGGGATAGAGCTACTGAACCCTCGTACAGACATAGAGAAAGACAAACTTAAAAGGAAACCCAAAAACTGGAGATTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATCAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTGCATAGTTTAACTCTTTT

Coding sequence (CDS)

ATGATTTATCTTTCACTGAACACTTTATTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTCCATCTTCTTCAACCCCTTTCCCAATTTCTCAAAATGGAGGCTCTTCATCTAGGTTCATATCGTTTATCATCTTCATCTTCCTTTCGCTCTTTCAACTACATTACAAATTCCTCCCACACCCTTAAACGTTTTCGCCCTCTTACTTTCCGTAGAGCCCAAATCAGAGCTGTTGGCACTGTTCCACAGAATCAATCTGAAACCACTGACCCTGAGGAGCCTCCGATTGTCGATTTGGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCAGATGTGCATTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCCAATATTGAGTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATCATTGAAGGGATAGAGCTACTGAACCCTCGTACAGACATAGAGAAAGACAAACTTAAAAGGAAACCCAAAAACTGGAGATTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATCAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTGCATAG

Protein sequence

MIYLSLNTLFLQPLSQFLKMEALHLLQPLSQFLKMEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYQKVELSESSESA

Homology

[Close]

BLAST of CaUC09G159470 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           MEALHLGSYRLSSSSSFRSFNYIT+SS TLKRFRPL+FRRA IRAVGTVPQNQSETTDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEIIEG ELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY+KVE+SESSESA
Sbjct: 181 HEWGYEKVEISESSESA 197

[Close]

BLAST of CaUC09G159470 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 384.8 bits (987), Expect = 5.2e-103
Identity = 185/197 (93.91%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           MEA HLGSYRLSSSSS RSFNYITNS+HTLKR RPL FRRA+IRAVGTVPQ+QSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY+KVELSESSES+
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of CaUC09G159470 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           MEALHLGSY L SSSSFRSFNYITNSSHTLKRFRPLTFRR Q+RAVGTVPQ+QSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSES 231
           HEWGY++VELS+SSES
Sbjct: 181 HEWGYEEVELSDSSES 196

[Close]

BLAST of CaUC09G159470 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 379.8 bits (974), Expect = 1.7e-101
Identity = 182/197 (92.39%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTVPQ+QSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY++V+LSE SESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of CaUC09G159470 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 2.9e-101
Identity = 182/197 (92.39%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTV Q+QSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY++V+LSE SESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of CaUC09G159470 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.1e-62
Identity = 121/192 (63.02%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 40  LGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRAQIRAVGTVPQNQSET 99
           +GS +LS S    S     + SH  K  +P ++         R   +RA+ T P +Q   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 100 TD-PEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 159
            D P+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 160 AGGGTCGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 219
           AG GTC TCMVEI+ G ELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 220 PEWKAHEWGYQK 222
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of CaUC09G159470 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.5e-103
Identity = 185/197 (93.91%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           MEA HLGSYRLSSSSS RSFNYITNS+HTLKR RPL FRRA+IRAVGTVPQ+QSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY+KVELSESSES+
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of CaUC09G159470 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.6e-103
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           MEALHLGSY L SSSSFRSFNYITNSSHTLKRFRPLTFRR Q+RAVGTVPQ+QSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSES 231
           HEWGY++VELS+SSES
Sbjct: 181 HEWGYEEVELSDSSES 196

[Close]

BLAST of CaUC09G159470 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.2e-102
Identity = 182/197 (92.39%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTVPQ+QSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY++V+LSE SESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of CaUC09G159470 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.4e-101
Identity = 182/197 (92.39%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           ME LHLGSY LSSSSSFRSFNYITNSSHTLKRFR LTFRR Q+RAVGTV Q+QSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY++V+LSE SESA
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of CaUC09G159470 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.7e-96
Identity = 171/197 (86.80%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 35  MEALHLGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTFRRAQIRAVGTVPQNQSETTDPE 94
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTFRR++IRAVGTVPQ+QS+T++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 95  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 154
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 155 CGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 214
           CGTCMVEI+EG ELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 215 HEWGYQKVELSESSESA 232
           HEWGY+KVELSESSES+
Sbjct: 181 HEWGYEKVELSESSESS 191

[Close]

BLAST of CaUC09G159470 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-63
Identity = 121/192 (63.02%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 40  LGSYRLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRAQIRAVGTVPQNQSET 99
           +GS +LS S    S     + SH  K  +P ++         R   +RA+ T P +Q   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 100 TD-PEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 159
            D P+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 160 AGGGTCGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 219
           AG GTC TCMVEI+ G ELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 220 PEWKAHEWGYQK 222
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of CaUC09G159470 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-29
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 74  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 133
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 134 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNW 193
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G +LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 194 RLACQTTVGKPDSRGMLVVQQLPEWK 214
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of CaUC09G159470 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-24
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 74  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 133
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 134 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGIELLNPRTDIEKDKLKRKPKNW 193
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G +LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 194 RLACQTTVGKPDSRG 203
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

[Close]

BLAST of CaUC09G159470 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-16
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 74  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 133
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 134 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGIELLNPRTDIEKDKLKR 183
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G +LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of CaUC09G159470 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 74  RAQIRAVGTVPQNQSETTDPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 133
           RA++ +  +   + S+ + P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 134 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVE 162
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of CaUC09G159470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899995.1	1.4e-103	94.92	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]
XP_022145222.1	5.2e-103	93.91	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_004141758.1	2.0e-102	93.37	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
KAA0059320.1	1.7e-101	92.39	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]
XP_008462178.1	2.9e-101	92.39	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]

BLAST of CaUC09G159470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	2.1e-62	63.02	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of CaUC09G159470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVZ7	2.5e-103	93.91	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A0A0KC78	9.6e-103	93.37	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A5A7UW39	8.2e-102	92.39	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CGA8	1.4e-101	92.39	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1KDJ1	6.7e-96	86.80	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of CaUC09G159470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	1.5e-63	63.02	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	3.1e-29	43.15	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	1.8e-24	42.22	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	6.8e-16	39.13	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	1.2e-09	36.17	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 147..195 e-value: 2.8E-9 score: 36.8
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 124..195 e-value: 2.21562E-8 score: 48.16
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 108..215 e-value: 1.3E-18 score: 68.7
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 35..222
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 35..222
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 117..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G159470.1	CaUC09G159470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0051536	iron-sulfur cluster binding