CaUC08G142280 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G142280
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
LocationCiama_Chr08: 3037893 .. 3038850 (-)
RNA-Seq ExpressionCaUC08G142280
SyntenyCaUC08G142280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGATATGTAAACAAGCGGTAGGAAAAACTACGAGCATCTGTGGGGTGAGTTTGAGGATAGTAAACTTGTGGAGTCACTAACAGAGCTTGTACAAAATGGAGGTTGGCGAGCTGATAATGGTACATTTAGGCCTGGTTATTTGCAACAATTGGAAAAGATGATGAGTGAGAAAATTCCAGGTTGCAACCTAAAAGCAACCCCACACCTTGAGTCTAGAATAAAGGTCCTAAAGAGGCAATGCAATGCAATAGCTAAACTGTTGGGTCCAACATGTAGTGGATTTTGTTGGAATGAAGAGGTAAAGAGTGTCGATGTTGAACAGAATATTTATGATGAGTGGGTAAAGGTAAGGATGTGTTTGCAAAATATTAAATAAAAATCATGCTTATATGTAATAATTATATATTTTCTATAATTAACATCCAAAGTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGTGGAGACACCTACTGATATGACATTCGATATGAATGAGACAGAGTAGAACATGCAATTACAATTGGATGAGTTTGAAATCCCAAATGTAGTACTCGGGAAAATATGTTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGATCATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTGTTGATATGGTGAAATTTATGAGTATGCAAACCATTGAGCTTCAAAGAATTTCTCCTTAGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA

mRNA sequence

ATGGATGTAGATATTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGTGGAGACACCTACTGATATGACATTCGATATGAATGAGACAGATACTCGGGAAAATATGTTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGATCATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTGTTGATATGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA

Coding sequence (CDS)

ATGGATGTAGATATTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGTGGAGACACCTACTGATATGACATTCGATATGAATGAGACAGATACTCGGGAAAATATGTTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGATCATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTGTTGATATGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA

Protein sequence

MDVDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENMLGDETPTIPTSRINGVGSFSRGSKRKQSSPINSVDMHKDEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDYN
Homology
BLAST of CaUC08G142280 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-08
Identity = 45/156 (28.85%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 6   HPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENMLGDETPTIP 65
           HPNAKG+ +K F H+++L+ +FGKDR       TP        E+   ++ + +E     
Sbjct: 111 HPNAKGMWKKPFPHYDDLSAVFGKDRA---DCHTP---EVRQTESPLNQDEIDEEPAEQS 170

Query: 66  TSRINGVGSFSRGSKRKQSS-PINSVDMHKDEKEVEALR----------------RQALD 125
           T R +     SRGSKRK+SS  +  +D+ K   E+++                  ++ ++
Sbjct: 171 TGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVEMQSTHMGRLASWQNEKYELELKEVVN 230

Query: 126 KLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDY 145
            +  + DL  ND+V + + +  D+ K D FLA P++
Sbjct: 231 AIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAVPEH 260

BLAST of CaUC08G142280 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 52/180 (28.89%), Postives = 83/180 (46.11%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNET------------ 62
           V  HPNAKGLR K   H+++L V FGKDR     ++ P DM      T            
Sbjct: 25  VKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAEDAHFEAQDF 84

Query: 63  --------DTRENMLGDETPTIPTSRINGVGSFSRGSKRK------------------QS 122
                   +T E+ + ++ P  PTS+   +G+ S GSKRK                  Q+
Sbjct: 85  YIPDPPMFNTTEDAIEEDLPNTPTSKPT-IGTSSGGSKRKRSGYTSEMVDVVRTNMRMQT 144

Query: 123 SPINSVDMHKDEKEVEALRRQAL--DKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP 143
           + +  +    D+KE + + R+ +  D+L+++ +L +ND V++   L  +V K   FL  P
Sbjct: 145 AHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVP 202

BLAST of CaUC08G142280 vs. NCBI nr
Match: VVA26458.1 (PREDICTED: At2g29880 [Prunus dulcis])

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-06
Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENMLGDETP 62
           V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ + +T  N  GD   
Sbjct: 116 VKVHNSAKGLRNKPFPHYDTLVEVFGKDRANGKGAEGPAEVIEDLTDNNT-FNFEGD--- 175

Query: 63  TIPTSRINGVGSFSRGSKRKQSSPINSVDMHK-----------DEKEVEALRRQALDKLQ 122
                   G+G  +       S+  + VDM K            E      R + +D+LQ
Sbjct: 176 --------GLGDMA-------STLRSFVDMTKTHLETMKWVLMSENATSERRAKIVDELQ 235

Query: 123 EMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
           ++  L+  D +  A A+  D  KIDL    PD
Sbjct: 236 KIQGLSDMDFIDAAAAIISDDAKIDLLFTLPD 248

BLAST of CaUC08G142280 vs. NCBI nr
Match: KAG6468192.1 (hypothetical protein ZIOFF_072763 [Zingiber officinale])

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-06
Identity = 47/158 (29.75%), Postives = 77/158 (48.73%), Query Frame = 0

Query: 4   DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMN----ETDTRENMLGD 63
           D HP A GLR K F H ++L  ++GKD   R   ETP+D   ++N    ETDT E+   +
Sbjct: 126 DSHPAAIGLRNKEFPHLDDLMFVWGKDHATRAKAETPSDAVEEINLCDEETDTFEHEKDE 185

Query: 64  ETPTIPTSRINGVGSFSRGSKRKQSSPINSV-----DMHKD--------EKEVEA--LRR 123
            T        +      R S+   SS  + V     + +++        +K++E+   + 
Sbjct: 186 HTKCQKDEESDYANQSIRKSETLDSSIYSQVCYCCYEANEEMKGISTYFKKQIESGDRKM 245

Query: 124 QALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP 143
           +  D+L E+ + +  + + V E +FKD +KID F A P
Sbjct: 246 KIYDELIELSEFSKQEIMDVGEYIFKDEHKIDNFFALP 283

BLAST of CaUC08G142280 vs. NCBI nr
Match: XP_038877524.1 (uncharacterized protein LOC120069782 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 4   DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTF------------------ 63
           D HPNAKGL+ K F++++EL+++FGKDR   EG ETP D                     
Sbjct: 43  DSHPNAKGLKHKPFLYYDELSIVFGKDRATSEGSETPYDQASATDEHLEDIRLGSQVNEQ 102

Query: 64  -----DMNETDTRENMLGDETPTIPTSRINGVGSFSRGSKRKQS 85
                DMN T    + + +  P  P SR  G  +  RG+KRK++
Sbjct: 103 QESIPDMNITTV--DGMNEVFPDTPISRYTGSSNDMRGTKRKRT 144

BLAST of CaUC08G142280 vs. ExPASy TrEMBL
Match: A0A5E4FL81 (PREDICTED: At2g29880 OS=Prunus dulcis OX=3755 GN=ALMOND_2B024138 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENMLGDETP 62
           V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ + +T  N  GD   
Sbjct: 116 VKVHNSAKGLRNKPFPHYDTLVEVFGKDRANGKGAEGPAEVIEDLTDNNT-FNFEGD--- 175

Query: 63  TIPTSRINGVGSFSRGSKRKQSSPINSVDMHK-----------DEKEVEALRRQALDKLQ 122
                   G+G  +       S+  + VDM K            E      R + +D+LQ
Sbjct: 176 --------GLGDMA-------STLRSFVDMTKTHLETMKWVLMSENATSERRAKIVDELQ 235

Query: 123 EMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
           ++  L+  D +  A A+  D  KIDL    PD
Sbjct: 236 KIQGLSDMDFIDAAAAIISDDAKIDLLFTLPD 248

BLAST of CaUC08G142280 vs. ExPASy TrEMBL
Match: A0A6P5U2X6 (uncharacterized protein At2g29880-like OS=Prunus avium OX=42229 GN=LOC110773273 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-06
Identity = 51/168 (30.36%), Postives = 77/168 (45.83%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENMLGDETP 62
           V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ +  T  N  GD   
Sbjct: 120 VKVHNSAKGLRNKPFPHYDTLVEVFGKDRANGKGAEGPAEVIEDLTDNST-FNFEGDGLD 179

Query: 63  TI----PTSRINGVGSFSRGSKRKQ-----------SSPINS-VDMHK-----------D 122
            I    PT++       +R +KR +           +S + S VD+ K            
Sbjct: 180 DINFSSPTTQTPICPPSTRPNKRARNDNWSQSMADMASTLRSFVDVTKTHLETVKCVLMS 239

Query: 123 EKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
           E      R + +D+LQ++  L+  D +  A A+  D  KIDL    PD
Sbjct: 240 ENATSERRGKIVDELQKIQGLSDMDVIDAAAAIISDDAKIDLLFTLPD 286

BLAST of CaUC08G142280 vs. ExPASy TrEMBL
Match: A0A2P6PUC3 (Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0284621 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 48/167 (28.74%), Postives = 76/167 (45.51%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENMLG 62
           V +H +AKGLR K F+H++ L   FG+DR    G E P +   D+N      D  EN L 
Sbjct: 118 VKVHKDAKGLRMKPFIHYDSLIEAFGRDRANGLGAEGPAEADEDLNNENNYADIEENGLD 177

Query: 63  DETPTIPTSRINGVGSFSRGSKRKQ----------SSPINS-VDMHK-----------DE 122
           + T     +R +     +R  KR +          +S + S VD+ K           +E
Sbjct: 178 EITVPSSVTRNSANPPSARTRKRARDAYSQCLGDMASTLRSFVDVTKAHLETMQGLLMNE 237

Query: 123 KEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
                 R + +++L ++  +N  D ++ A A+  D  KIDL  + PD
Sbjct: 238 HVTSERRGKLVEELMKIEGINDYDVIEAAAAIIGDDSKIDLLFSLPD 284

BLAST of CaUC08G142280 vs. ExPASy TrEMBL
Match: A0A2P6PRT6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0274461 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 48/167 (28.74%), Postives = 76/167 (45.51%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENMLG 62
           V +H +AKGLR K F+H++ L   FG+DR    G E P +   D+N      D  EN L 
Sbjct: 28  VKVHKDAKGLRMKPFIHYDSLIEAFGRDRANGLGAEGPAEADEDLNNENNYADIEENGLD 87

Query: 63  DETPTIPTSRINGVGSFSRGSKRKQ----------SSPINS-VDMHK-----------DE 122
           + T     +R +     +R  KR +          +S + S VD+ K           +E
Sbjct: 88  EITVPSSVTRNSANPPSARTRKRARDAYSQCLGDMASTLRSFVDVTKAHLETMQGVLMNE 147

Query: 123 KEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
                 R + +++L ++  +N  D ++ A A+  D  KIDL  + PD
Sbjct: 148 HVTSERRGKLVEELMKIEGINDYDVIEAAAAIIGDDSKIDLLFSLPD 194

BLAST of CaUC08G142280 vs. ExPASy TrEMBL
Match: A0A2P6QKN4 (Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0072391 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-05
Identity = 45/168 (26.79%), Postives = 74/168 (44.05%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENMLGDETP 62
           V +H  AKGLR K F+H++ L   FG+DR    G E P +   D+N  +   ++ GD  P
Sbjct: 124 VKVHKEAKGLRLKPFIHYDSLVEAFGRDRANGLGAEGPAEADEDLNNDNEFVDLEGDGLP 183

Query: 63  --TIPTSRINGVGSFSRGSKRKQ-------------SSPINS-VDMHKDEKE-------- 122
              +PT       S S  ++ ++             +S + S VD+ K   E        
Sbjct: 184 ENVVPTPATRTTSSSSNSTRTRKRARDTYAQCLGDMASTLRSFVDVTKTHLETMKEVLLN 243

Query: 123 ---VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
                  R + +++L ++  LN  D ++ A  +  D  KI+L  + PD
Sbjct: 244 DHATSTKRGKLVEELMKIEGLNDYDVLEAAATIIGDDSKIELLFSLPD 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887234.14.0e-0828.85uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_022158565.12.2e-0628.89uncharacterized protein LOC111025018 [Momordica charantia][more]
VVA26458.14.9e-0630.92PREDICTED: At2g29880 [Prunus dulcis][more]
KAG6468192.18.3e-0629.75hypothetical protein ZIOFF_072763 [Zingiber officinale][more]
XP_038877524.11.1e-0535.58uncharacterized protein LOC120069782 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5E4FL812.4e-0630.92PREDICTED: At2g29880 OS=Prunus dulcis OX=3755 GN=ALMOND_2B024138 PE=4 SV=1[more]
A0A6P5U2X69.0e-0630.36uncharacterized protein At2g29880-like OS=Prunus avium OX=42229 GN=LOC110773273 ... [more]
A0A2P6PUC34.5e-0528.74Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=R... [more]
A0A2P6PRT64.5e-0528.74Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0274461 PE=4... [more]
A0A2P6QKN47.6e-0526.79Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=R... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..96
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 5..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G142280.1CaUC08G142280.1mRNA