CaUC08G141810 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G141810
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr08: 1687902 .. 1688228 (-)
RNA-Seq Expression	CaUC08G141810
Synteny	CaUC08G141810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTCCTGAATTTGCCGAGACTATTCCAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCTTACAGTAGATACCATGGGTGTTTTGTATTGTATCAAACCCGCCCCACATGGTAGCAATCCAACTAAAGATGTTTATTCCAGTGGGGGCTGCTATGATCATGGTAGCAACGTTGAAGTAGGCATGGGTATCAAAGTCAAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCTAAGAACACCTATACTGATCATGGCATAAACCAGCCTGGATACCTGAAAACCAATTTTCCCGAAAAAGTTGAAACGATATGA

mRNA sequence

ATGTCTAGTCCTGAATTTGCCGAGACTATTCCAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCTTACAGTAGATACCATGGGTGTTTTGTATTGTATCAAACCCGCCCCACATGGTAGCAATCCAACTAAAGATGTTTATTCCAGTGGGGGCTGCTATGATCATGGTAGCAACGTTGAAGTAGGCATGGGTATCAAAGTCAAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCTAAGAACACCTATACTGATCATGGCATAAACCAGCCTGGATACCTGAAAACCAATTTTCCCGAAAAAGTTGAAACGATATGA

Coding sequence (CDS)

ATGTCTAGTCCTGAATTTGCCGAGACTATTCCAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCTTACAGTAGATACCATGGGTGTTTTGTATTGTATCAAACCCGCCCCACATGGTAGCAATCCAACTAAAGATGTTTATTCCAGTGGGGGCTGCTATGATCATGGTAGCAACGTTGAAGTAGGCATGGGTATCAAAGTCAAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCTAAGAACACCTATACTGATCATGGCATAAACCAGCCTGGATACCTGAAAACCAATTTTCCCGAAAAAGTTGAAACGATATGA

Protein sequence

MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIKPAPHGSNPTKDVYSSGGCYDHGSNVEVGMGIKVKAHSKHMMSPNKKSKNTYTDHGINQPGYLKTNFPEKVETI

Homology

[Close]

BLAST of CaUC08G141810 vs. NCBI nr
Match: KAF3635473.1 (ATP synthase subunit alpha, chloroplastic [Capsicum annuum])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIKPAPHGSNPTKDVYSSGGCYDHGSNV 60
          MSSPEFA TIPVSPPMVNKKM+ T + MGVLYCI+P PHGS+PTKD  SSG  YDHGS  
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTTNNMGVLYCIEPLPHGSDPTKDFDSSGDNYDHGSCG 60

Query: 61 EVG 64
          EVG
Sbjct: 61 EVG 63

[Close]

BLAST of CaUC08G141810 vs. NCBI nr
Match: GFC35842.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIK-PAPHGSNPTKDVYSSGGCYDHGS 59
          MSSPEFAETIPVSPPMVNK MD T + MGVLYCIK P PHGS+PTKD  SSG  YDHGS
Sbjct: 1  MSSPEFAETIPVSPPMVNKNMDPTANNMGVLYCIKPPTPHGSDPTKDFDSSGDSYDHGS 59

[Close]

BLAST of CaUC08G141810 vs. NCBI nr
Match: KAF5767741.1 (hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKMD T + MGVLYCI+P PH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMDPTANNMGVLYCIEP-PH 38

[Close]

BLAST of CaUC08G141810 vs. NCBI nr
Match: KAF1856899.1 (hypothetical protein Lal_00001930 [Lupinus albus])

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKM+ T + MGVLYCI+P PH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEP-PH 38

[Close]

BLAST of CaUC08G141810 vs. ExPASy TrEMBL
Match: M8AUQ9 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKM+ T + MGVLYCI+P PH
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTANNMGVLYCIEP-PH 38

[Close]

BLAST of CaUC08G141810 vs. ExPASy TrEMBL
Match: A0A6A5L812 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1  MSSPEFAETIPVSPPMVNKKMDLTVDTMGVLYCIKPAPH 40
          MSSPEFA TIPVSPPMVNKKM+ T + MGVLYCI+P PH
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEP-PH 38

The following BLAST results are available for this feature:

BLAST of CaUC08G141810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3635473.1	2.1e-17	76.19	ATP synthase subunit alpha, chloroplastic [Capsicum annuum]	[more]
GFC35842.1	2.3e-16	79.66	hypothetical protein [Tanacetum cinerariifolium]	[more]
KAF5767741.1	1.9e-07	82.05	hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus]	[more]
KAF1856899.1	7.3e-07	79.49	hypothetical protein Lal_00001930 [Lupinus albus]	[more]

BLAST of CaUC08G141810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC08G141810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M8AUQ9	2.1e-07	79.49	Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1	[more]
A0A6A5L812	3.5e-07	79.49	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1	[more]

BLAST of CaUC08G141810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G141810.1	CaUC08G141810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane