CaUC08G141780 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G141780
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionF-box/LRR-repeat protein
LocationCiama_Chr08: 1630718 .. 1631221 (-)
RNA-Seq ExpressionCaUC08G141780
SyntenyCaUC08G141780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGTATTTATAACTGGAAACACCATATCAACATATTCATCACTTGTTTTGCTGAAGATTGTATTTGGGTTTGAGGATGATGGGGGAGACTTGGCTTTTCCATTATTGAGAAATTTAGAGATTGAATGTCAGTGGGAGGCACACGATTGCTGTGGAGATTATATTGGGATTAGAATGTTCTCTGCCTATCCTATTTTAGAATCTTTGGTTTTAATCAATTATCTTTTCTAGAGTGCTACTATTTGTGCCCCAAAACTTCAAATTTTGGAATTATGTTCCGATGGCTGCATACTCAGATTTTCAAAAGTTGAATTAATGTGTACATCAACTCTTAAAAATGTCAAGTTTAGGAATATTTTGCCCACTATCATGAACTCTGCTTCAGAATTTCCATCCATAGAGAAAATGAATATTGTTGTTCATGATTTTGAATTAAAGATTTCTAAATCTCAAAAACCTATGACAAAGTTCTGTCAATTGCTTAGAGTGTTTCATAATGCA

mRNA sequence

ATGTTAATTGTATTTGGGTTTGAGGATGATGGGGGAGACTTGGCTTTTCCATTATTGAGAAATTTAGAGATTGAATGTCAGTGGGAGGCACACGATTGCTGTGGAGATTATATTGGGATTAGAATGTTCTCTGCCTATCCTATTTTAGAATCTTTGAGTGCTACTATTTGTGCCCCAAAACTTCAAATTTTGGAATTATGTTCCGATGGCTGCATACTCAGATTTTCAAAAGTTGAATTAATGTGTACATCAACTCTTAAAAATGTCAAGTTTAGGAATATTTTGCCCACTATCATGAACTCTGCTTCAGAATTTCCATCCATAGAGAAAATGAATATTGTTGTTCATGATTTTGAATTAAAGATTTCTAAATCTCAAAAACCTATGACAAAGTTCTGTCAATTGCTTAGAGTGTTTCATAATGCA

Coding sequence (CDS)

ATGTTAATTGTATTTGGGTTTGAGGATGATGGGGGAGACTTGGCTTTTCCATTATTGAGAAATTTAGAGATTGAATGTCAGTGGGAGGCACACGATTGCTGTGGAGATTATATTGGGATTAGAATGTTCTCTGCCTATCCTATTTTAGAATCTTTGAGTGCTACTATTTGTGCCCCAAAACTTCAAATTTTGGAATTATGTTCCGATGGCTGCATACTCAGATTTTCAAAAGTTGAATTAATGTGTACATCAACTCTTAAAAATGTCAAGTTTAGGAATATTTTGCCCACTATCATGAACTCTGCTTCAGAATTTCCATCCATAGAGAAAATGAATATTGTTGTTCATGATTTTGAATTAAAGATTTCTAAATCTCAAAAACCTATGACAAAGTTCTGTCAATTGCTTAGAGTGTTTCATAATGCA

Protein sequence

MLIVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESLSATICAPKLQILELCSDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNIVVHDFELKISKSQKPMTKFCQLLRVFHNA
Homology
BLAST of CaUC08G141780 vs. NCBI nr
Match: XP_022141791.1 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 5.6e-23
Identity = 78/153 (50.98%), Postives = 94/153 (61.44%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDC--CGDYIGIRMFSAYPILESL-------- 62
           +V GF  D G L  P LR LEIE +    DC    DY GIRMFS  P L+SL        
Sbjct: 259 MVCGFVADWGVLTLPSLRILEIEXE----DCEDDADYKGIRMFSGCPNLKSLVLINYLFE 318

Query: 63  SATICAPKLQILELCSDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMN 122
           SATICAPKL+ L LCS G  L FS+VEL CTS+L+NV F N+LPT+ NSA EF  I+K+N
Sbjct: 319 SATICAPKLENLVLCS-GNELVFSEVELTCTSSLRNVTFSNMLPTV-NSALEFSCIQKVN 378

Query: 123 IVVHDFELKISKS---QKPMTKFCQLLRVFHNA 143
           I VH+++         Q  +  F +L RVFHNA
Sbjct: 379 IEVHNYQFSSGNGYFCQNKIAAFSELFRVFHNA 405

BLAST of CaUC08G141780 vs. NCBI nr
Match: KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
           +V GF DD G LA P L+ LEI+C W A D   +Y GI MFS  P LESL        SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218

Query: 63  TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
           TI AP+L+  +LC S    L F +VEL+ T TLK V F N+LP ++ S SEF  I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278

Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
            + D  F    S++Q+  +KF  LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

BLAST of CaUC08G141780 vs. NCBI nr
Match: XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
           +V GF DD G LA P L+ LEI+C W A D   +Y GI MFS  P LESL        SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218

Query: 63  TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
           TI AP+L+  +LC S    L F +VEL+ T TLK V F N+LP ++ S SEF  I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278

Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
            + D  F    S++Q+  +KF  LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

BLAST of CaUC08G141780 vs. NCBI nr
Match: XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-17
Identity = 71/151 (47.02%), Postives = 88/151 (58.28%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
           +V  F  D G LA P L+ LEIEC W   D   +Y GI MF   P LESL        S+
Sbjct: 149 MVCAFVHDWGVLAIPSLKILEIECDWYERDKEANYKGITMFPGCPNLESLVLVDYLFESS 208

Query: 63  TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
           TI APKL+ L+LC S    L F +VEL  T TL+ V F N+LP I+ S SEF  I K++I
Sbjct: 209 TISAPKLKNLKLCASPRMELTFPEVELF-TPTLETVNFINVLP-IVKSDSEFSCIHKVDI 268

Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
            + D  FE   S++QK  + F +LL VFHNA
Sbjct: 269 QLKDSIFERVGSQTQKLKSNFRELLSVFHNA 297

BLAST of CaUC08G141780 vs. NCBI nr
Match: XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-16
Identity = 71/153 (46.41%), Postives = 87/153 (56.86%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
           ++ GF D+   LA P L+ LEI+  W   D   +Y G  MF   P LESL        SA
Sbjct: 493 MICGFVDNWAFLALPSLKFLEIQWDWLHWDEKANYNGTTMFPGCPNLESLVFVDYLFESA 552

Query: 63  TICAPKLQILELCSDGCI-LRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
           TI APKL+ LELCS     L F +VEL  T  LK+V F N+LP I+ S SEF  I K+NI
Sbjct: 553 TISAPKLENLELCSFSDFGLTFPEVELF-TPILKSVNFINVLP-ILKSDSEFLCIHKVNI 612

Query: 123 VVHD--FELKIS--KSQKPMTKFCQLLRVFHNA 143
            + D  FE + S    QK  + F +LLRVFHNA
Sbjct: 613 QLEDSVFEREYSGPNKQKFNSNFGELLRVFHNA 643

BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 78/153 (50.98%), Postives = 94/153 (61.44%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDC--CGDYIGIRMFSAYPILESL-------- 62
           +V GF  D G L  P LR LEIE +    DC    DY GIRMFS  P L+SL        
Sbjct: 259 MVCGFVADWGVLTLPSLRILEIEXE----DCEDDADYKGIRMFSGCPNLKSLVLINYLFE 318

Query: 63  SATICAPKLQILELCSDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMN 122
           SATICAPKL+ L LCS G  L FS+VEL CTS+L+NV F N+LPT+ NSA EF  I+K+N
Sbjct: 319 SATICAPKLENLVLCS-GNELVFSEVELTCTSSLRNVTFSNMLPTV-NSALEFSCIQKVN 378

Query: 123 IVVHDFELKISKS---QKPMTKFCQLLRVFHNA 143
           I VH+++         Q  +  F +L RVFHNA
Sbjct: 379 IEVHNYQFSSGNGYFCQNKIAAFSELFRVFHNA 405

BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
           +V GF DD G LA P L+ LEI+C W A D   +Y GI MFS  P LESL        SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218

Query: 63  TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
           TI AP+L+  +LC S    L F +VEL+ T TLK V F N+LP ++ S SEF  I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278

Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
            + D  F    S++Q+  +KF  LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match: A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
           +V GF DD G LA P L+ LEI+C W A D   +Y GI MFS  P LESL        SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218

Query: 63  TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
           TI AP+L+  +LC S    L F +VEL+ T TLK V F N+LP ++ S SEF  I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278

Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
            + D  F    S++Q+  +KF  LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match: A0A0A0KUU7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650440 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 0

Query: 13  DLAFPLLRNL----EIECQWEAHDCCGDYIGIRMFSAYPILESL--------SATICAPK 72
           D  FP+  +L     I+C W A D   +Y GI MFS  P LESL        +ATI AP+
Sbjct: 132 DYCFPMCSSLIELKMIQCDWSARDERANYNGITMFSGCPNLESLVLVDYLFETATISAPR 191

Query: 73  LQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNIVVHD-- 132
           L+I +LC S    L F +VEL+ T TLK V F N+LP I+ S SEF  I K++I + D  
Sbjct: 192 LEIFKLCASHDMELTFPQVELL-TPTLKTVNFVNMLP-ILQSDSEFSCIHKVDIQLEDSV 251

Query: 133 FELKISKSQKPMTKFCQLLRV 139
           F    S++Q+  +KF  LL V
Sbjct: 252 FTTDGSQTQELKSKFIDLLTV 270

BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match: A0A0A0KSW6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-11
Identity = 65/151 (43.05%), Postives = 87/151 (57.62%), Query Frame = 0

Query: 3   IVFGFEDDGGDLAFPLLRNLEIECQW-EAHDCCGDYIGIRMFSAYPILESL--------S 62
           +V  F D+   LA P L+ LEIE  W E  D   ++  I MF   P LESL        +
Sbjct: 159 LVCVFADNLDVLALPSLKILEIESLWLERPDKRANHKEITMFPGCPNLESLVFFVHLFQT 218

Query: 63  ATICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMN 122
           ATI APKL+ L+LC S      FS+V+L+ T TL+N+ F N+LPT+  S  EF  I+K++
Sbjct: 219 ATISAPKLKNLKLCASPDNDPTFSEVQLL-TPTLENISFVNVLPTV-KSDYEFSRIDKVD 278

Query: 123 I-VVHDFELKISKSQKPMTKFCQLLRVFHNA 143
           I +V  FE     S+K  +KF +LL VFH A
Sbjct: 279 IQLVSRFERDDRNSRK--SKFRELLSVFHMA 305

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141791.15.6e-2350.98LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica char... [more]
KAA0039267.12.2e-1947.02F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat... [more]
XP_008459617.12.2e-1947.02PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo][more]
XP_038890214.12.1e-1747.02F-box/LRR-repeat protein At3g26922-like [Benincasa hispida][more]
XP_038890213.18.7e-1646.41uncharacterized protein LOC120079853 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CKA92.7e-2350.98LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... [more]
A0A5A7TCF11.1e-1947.02F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CB411.1e-1947.02F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0KUU71.3e-1243.26F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650440 PE=4 ... [more]
A0A0A0KSW64.1e-1143.05F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G141780.1CaUC08G141780.1mRNA