Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGTATTTATAACTGGAAACACCATATCAACATATTCATCACTTGTTTTGCTGAAGATTGTATTTGGGTTTGAGGATGATGGGGGAGACTTGGCTTTTCCATTATTGAGAAATTTAGAGATTGAATGTCAGTGGGAGGCACACGATTGCTGTGGAGATTATATTGGGATTAGAATGTTCTCTGCCTATCCTATTTTAGAATCTTTGGTTTTAATCAATTATCTTTTCTAGAGTGCTACTATTTGTGCCCCAAAACTTCAAATTTTGGAATTATGTTCCGATGGCTGCATACTCAGATTTTCAAAAGTTGAATTAATGTGTACATCAACTCTTAAAAATGTCAAGTTTAGGAATATTTTGCCCACTATCATGAACTCTGCTTCAGAATTTCCATCCATAGAGAAAATGAATATTGTTGTTCATGATTTTGAATTAAAGATTTCTAAATCTCAAAAACCTATGACAAAGTTCTGTCAATTGCTTAGAGTGTTTCATAATGCA
mRNA sequence
ATGTTAATTGTATTTGGGTTTGAGGATGATGGGGGAGACTTGGCTTTTCCATTATTGAGAAATTTAGAGATTGAATGTCAGTGGGAGGCACACGATTGCTGTGGAGATTATATTGGGATTAGAATGTTCTCTGCCTATCCTATTTTAGAATCTTTGAGTGCTACTATTTGTGCCCCAAAACTTCAAATTTTGGAATTATGTTCCGATGGCTGCATACTCAGATTTTCAAAAGTTGAATTAATGTGTACATCAACTCTTAAAAATGTCAAGTTTAGGAATATTTTGCCCACTATCATGAACTCTGCTTCAGAATTTCCATCCATAGAGAAAATGAATATTGTTGTTCATGATTTTGAATTAAAGATTTCTAAATCTCAAAAACCTATGACAAAGTTCTGTCAATTGCTTAGAGTGTTTCATAATGCA
Coding sequence (CDS)
ATGTTAATTGTATTTGGGTTTGAGGATGATGGGGGAGACTTGGCTTTTCCATTATTGAGAAATTTAGAGATTGAATGTCAGTGGGAGGCACACGATTGCTGTGGAGATTATATTGGGATTAGAATGTTCTCTGCCTATCCTATTTTAGAATCTTTGAGTGCTACTATTTGTGCCCCAAAACTTCAAATTTTGGAATTATGTTCCGATGGCTGCATACTCAGATTTTCAAAAGTTGAATTAATGTGTACATCAACTCTTAAAAATGTCAAGTTTAGGAATATTTTGCCCACTATCATGAACTCTGCTTCAGAATTTCCATCCATAGAGAAAATGAATATTGTTGTTCATGATTTTGAATTAAAGATTTCTAAATCTCAAAAACCTATGACAAAGTTCTGTCAATTGCTTAGAGTGTTTCATAATGCA
Protein sequence
MLIVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESLSATICAPKLQILELCSDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNIVVHDFELKISKSQKPMTKFCQLLRVFHNA
Homology
BLAST of CaUC08G141780 vs. NCBI nr
Match:
XP_022141791.1 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia])
HSP 1 Score: 118.2 bits (295), Expect = 5.6e-23
Identity = 78/153 (50.98%), Postives = 94/153 (61.44%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDC--CGDYIGIRMFSAYPILESL-------- 62
+V GF D G L P LR LEIE + DC DY GIRMFS P L+SL
Sbjct: 259 MVCGFVADWGVLTLPSLRILEIEXE----DCEDDADYKGIRMFSGCPNLKSLVLINYLFE 318
Query: 63 SATICAPKLQILELCSDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMN 122
SATICAPKL+ L LCS G L FS+VEL CTS+L+NV F N+LPT+ NSA EF I+K+N
Sbjct: 319 SATICAPKLENLVLCS-GNELVFSEVELTCTSSLRNVTFSNMLPTV-NSALEFSCIQKVN 378
Query: 123 IVVHDFELKISKS---QKPMTKFCQLLRVFHNA 143
I VH+++ Q + F +L RVFHNA
Sbjct: 379 IEVHNYQFSSGNGYFCQNKIAAFSELFRVFHNA 405
BLAST of CaUC08G141780 vs. NCBI nr
Match:
KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])
HSP 1 Score: 106.3 bits (264), Expect = 2.2e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
+V GF DD G LA P L+ LEI+C W A D +Y GI MFS P LESL SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218
Query: 63 TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
TI AP+L+ +LC S L F +VEL+ T TLK V F N+LP ++ S SEF I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278
Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
+ D F S++Q+ +KF LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307
BLAST of CaUC08G141780 vs. NCBI nr
Match:
XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])
HSP 1 Score: 106.3 bits (264), Expect = 2.2e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
+V GF DD G LA P L+ LEI+C W A D +Y GI MFS P LESL SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218
Query: 63 TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
TI AP+L+ +LC S L F +VEL+ T TLK V F N+LP ++ S SEF I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278
Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
+ D F S++Q+ +KF LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307
BLAST of CaUC08G141780 vs. NCBI nr
Match:
XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])
HSP 1 Score: 99.8 bits (247), Expect = 2.1e-17
Identity = 71/151 (47.02%), Postives = 88/151 (58.28%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
+V F D G LA P L+ LEIEC W D +Y GI MF P LESL S+
Sbjct: 149 MVCAFVHDWGVLAIPSLKILEIECDWYERDKEANYKGITMFPGCPNLESLVLVDYLFESS 208
Query: 63 TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
TI APKL+ L+LC S L F +VEL T TL+ V F N+LP I+ S SEF I K++I
Sbjct: 209 TISAPKLKNLKLCASPRMELTFPEVELF-TPTLETVNFINVLP-IVKSDSEFSCIHKVDI 268
Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
+ D FE S++QK + F +LL VFHNA
Sbjct: 269 QLKDSIFERVGSQTQKLKSNFRELLSVFHNA 297
BLAST of CaUC08G141780 vs. NCBI nr
Match:
XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])
HSP 1 Score: 94.4 bits (233), Expect = 8.7e-16
Identity = 71/153 (46.41%), Postives = 87/153 (56.86%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
++ GF D+ LA P L+ LEI+ W D +Y G MF P LESL SA
Sbjct: 493 MICGFVDNWAFLALPSLKFLEIQWDWLHWDEKANYNGTTMFPGCPNLESLVFVDYLFESA 552
Query: 63 TICAPKLQILELCSDGCI-LRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
TI APKL+ LELCS L F +VEL T LK+V F N+LP I+ S SEF I K+NI
Sbjct: 553 TISAPKLENLELCSFSDFGLTFPEVELF-TPILKSVNFINVLP-ILKSDSEFLCIHKVNI 612
Query: 123 VVHD--FELKIS--KSQKPMTKFCQLLRVFHNA 143
+ D FE + S QK + F +LLRVFHNA
Sbjct: 613 QLEDSVFEREYSGPNKQKFNSNFGELLRVFHNA 643
BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match:
A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 78/153 (50.98%), Postives = 94/153 (61.44%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDC--CGDYIGIRMFSAYPILESL-------- 62
+V GF D G L P LR LEIE + DC DY GIRMFS P L+SL
Sbjct: 259 MVCGFVADWGVLTLPSLRILEIEXE----DCEDDADYKGIRMFSGCPNLKSLVLINYLFE 318
Query: 63 SATICAPKLQILELCSDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMN 122
SATICAPKL+ L LCS G L FS+VEL CTS+L+NV F N+LPT+ NSA EF I+K+N
Sbjct: 319 SATICAPKLENLVLCS-GNELVFSEVELTCTSSLRNVTFSNMLPTV-NSALEFSCIQKVN 378
Query: 123 IVVHDFELKISKS---QKPMTKFCQLLRVFHNA 143
I VH+++ Q + F +L RVFHNA
Sbjct: 379 IEVHNYQFSSGNGYFCQNKIAAFSELFRVFHNA 405
BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match:
A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
+V GF DD G LA P L+ LEI+C W A D +Y GI MFS P LESL SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218
Query: 63 TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
TI AP+L+ +LC S L F +VEL+ T TLK V F N+LP ++ S SEF I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278
Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
+ D F S++Q+ +KF LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307
BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match:
A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQWEAHDCCGDYIGIRMFSAYPILESL--------SA 62
+V GF DD G LA P L+ LEI+C W A D +Y GI MFS P LESL SA
Sbjct: 159 MVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDGITMFSGCPNLESLVLVDYLFESA 218
Query: 63 TICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNI 122
TI AP+L+ +LC S L F +VEL+ T TLK V F N+LP ++ S SEF I+K++I
Sbjct: 219 TISAPRLENFKLCASHDMELTFPQVELL-TPTLKAVNFVNVLP-VLESDSEFSCIQKVDI 278
Query: 123 VVHD--FELKISKSQKPMTKFCQLLRVFHNA 143
+ D F S++Q+ +KF LL V HNA
Sbjct: 279 QLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307
BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match:
A0A0A0KUU7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650440 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 0
Query: 13 DLAFPLLRNL----EIECQWEAHDCCGDYIGIRMFSAYPILESL--------SATICAPK 72
D FP+ +L I+C W A D +Y GI MFS P LESL +ATI AP+
Sbjct: 132 DYCFPMCSSLIELKMIQCDWSARDERANYNGITMFSGCPNLESLVLVDYLFETATISAPR 191
Query: 73 LQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMNIVVHD-- 132
L+I +LC S L F +VEL+ T TLK V F N+LP I+ S SEF I K++I + D
Sbjct: 192 LEIFKLCASHDMELTFPQVELL-TPTLKTVNFVNMLP-ILQSDSEFSCIHKVDIQLEDSV 251
Query: 133 FELKISKSQKPMTKFCQLLRV 139
F S++Q+ +KF LL V
Sbjct: 252 FTTDGSQTQELKSKFIDLLTV 270
BLAST of CaUC08G141780 vs. ExPASy TrEMBL
Match:
A0A0A0KSW6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 4.1e-11
Identity = 65/151 (43.05%), Postives = 87/151 (57.62%), Query Frame = 0
Query: 3 IVFGFEDDGGDLAFPLLRNLEIECQW-EAHDCCGDYIGIRMFSAYPILESL--------S 62
+V F D+ LA P L+ LEIE W E D ++ I MF P LESL +
Sbjct: 159 LVCVFADNLDVLALPSLKILEIESLWLERPDKRANHKEITMFPGCPNLESLVFFVHLFQT 218
Query: 63 ATICAPKLQILELC-SDGCILRFSKVELMCTSTLKNVKFRNILPTIMNSASEFPSIEKMN 122
ATI APKL+ L+LC S FS+V+L+ T TL+N+ F N+LPT+ S EF I+K++
Sbjct: 219 ATISAPKLKNLKLCASPDNDPTFSEVQLL-TPTLENISFVNVLPTV-KSDYEFSRIDKVD 278
Query: 123 I-VVHDFELKISKSQKPMTKFCQLLRVFHNA 143
I +V FE S+K +KF +LL VFH A
Sbjct: 279 IQLVSRFERDDRNSRK--SKFRELLSVFHMA 305
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022141791.1 | 5.6e-23 | 50.98 | LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica char... | [more] |
KAA0039267.1 | 2.2e-19 | 47.02 | F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat... | [more] |
XP_008459617.1 | 2.2e-19 | 47.02 | PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo] | [more] |
XP_038890214.1 | 2.1e-17 | 47.02 | F-box/LRR-repeat protein At3g26922-like [Benincasa hispida] | [more] |
XP_038890213.1 | 8.7e-16 | 46.41 | uncharacterized protein LOC120079853 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CKA9 | 2.7e-23 | 50.98 | LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... | [more] |
A0A5A7TCF1 | 1.1e-19 | 47.02 | F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A1S3CB41 | 1.1e-19 | 47.02 | F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... | [more] |
A0A0A0KUU7 | 1.3e-12 | 43.26 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650440 PE=4 ... | [more] |
A0A0A0KSW6 | 4.1e-11 | 43.05 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |